RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 SLC16A2P36021 539 aa21.67■■□□□ 1.06
HOXD3-204ENST00000459979 ZNF467Q7Z7K2 595 aaPredicted RBP21.67■■□□□ 1.06
HOXD3-204ENST00000459979 NCOA7Q8NI08 942 aa21.67■■□□□ 1.06
HOXD3-204ENST00000459979 AGBL1Q96MI9 1066 aa21.67■■□□□ 1.06
HOXD3-204ENST00000459979 ACAD9Q9H845 621 aa21.67■■□□□ 1.06
HOXD3-204ENST00000459979 GPCPD1Q9NPB8 672 aa21.67■■□□□ 1.06
HOXD3-204ENST00000459979 XPNPEP3Q9NQH7 507 aa21.67■■□□□ 1.06
HOXD3-204ENST00000459979 PNMA2Q9UL42 364 aa21.67■■□□□ 1.06
HOXD3-204ENST00000459979 TRIM43BA6NCK2 446 aa21.66■■□□□ 1.06
HOXD3-204ENST00000459979 CDC45O75419 566 aa21.66■■□□□ 1.06
HOXD3-204ENST00000459979 NECTIN1Q15223 517 aa21.66■■□□□ 1.06
HOXD3-204ENST00000459979 STOX1Q6ZVD7 989 aa21.66■■□□□ 1.06
HOXD3-204ENST00000459979 TRIM43Q96BQ3 446 aaPredicted RBP21.66■■□□□ 1.06
HOXD3-204ENST00000459979 DDX11Q96FC9 970 aa21.66■■□□□ 1.06
HOXD3-204ENST00000459979 TINF2Q9BSI4 451 aa21.66■■□□□ 1.06
HOXD3-204ENST00000459979 RARBP10826 455 aa21.65■■□□□ 1.06
HOXD3-204ENST00000459979 SLC4A3P48751 1232 aa21.65■■□□□ 1.06
HOXD3-204ENST00000459979 TLE2Q04725 743 aa21.65■■□□□ 1.06
HOXD3-204ENST00000459979 ASPRV1Q53RT3 343 aa21.65■■□□□ 1.06
HOXD3-204ENST00000459979 IFIT1BQ5T764 474 aaKnown RBP21.65■■□□□ 1.06
HOXD3-204ENST00000459979 FAM109BQ6ICB4 259 aaPredicted RBP21.65■■□□□ 1.06
HOXD3-204ENST00000459979 CASC1Q6TDU7 716 aa21.65■■□□□ 1.06
HOXD3-204ENST00000459979 MAMDC4Q6UXC1 1216 aa21.65■■□□□ 1.06
HOXD3-204ENST00000459979 RALYLQ86SE5 291 aaKnown RBP21.65■■□□□ 1.06
HOXD3-204ENST00000459979 ANKRD35Q8N283 1001 aa21.65■■□□□ 1.06
HOXD3-204ENST00000459979 RNF146Q9NTX7 359 aa21.65■■□□□ 1.06
HOXD3-204ENST00000459979 PPP4R2Q9NY27 417 aa21.65■■□□□ 1.06
HOXD3-204ENST00000459979 SNAP25P60880 206 aa21.64■■□□□ 1.05
HOXD3-204ENST00000459979 ZNF697Q5TEC3 545 aa21.64■■□□□ 1.05
HOXD3-204ENST00000459979 CCDC174Q6PII3 467 aa21.64■■□□□ 1.05
HOXD3-204ENST00000459979 TRERF1Q96PN7 1200 aa21.64■■□□□ 1.05
HOXD3-204ENST00000459979 MTA3Q9BTC8 594 aa21.64■■□□□ 1.05
HOXD3-204ENST00000459979 ANO2Q9NQ90 1003 aa21.64■■□□□ 1.05
HOXD3-204ENST00000459979 PHF24Q9UPV7 400 aa21.64■■□□□ 1.05
HOXD3-204ENST00000459979 WDR19Q8NEZ3 1342 aa21.63■■□□□ 1.05
HOXD3-204ENST00000459979 SYNGAP1Q96PV0 1343 aa21.63■■□□□ 1.05
HOXD3-204ENST00000459979 ZNF865P0CJ78 1059 aaPredicted RBP21.63■■□□□ 1.05
HOXD3-204ENST00000459979 ALAS1P13196 640 aa21.63■■□□□ 1.05
HOXD3-204ENST00000459979 ITGB8P26012 769 aa21.63■■□□□ 1.05
HOXD3-204ENST00000459979 MB21D2Q8IYB1 491 aaPredicted RBP21.63■■□□□ 1.05
HOXD3-204ENST00000459979 A1CFQ9NQ94 594 aaKnown RBP21.63■■□□□ 1.05
HOXD3-204ENST00000459979 HOMER2Q9NSB8 354 aa21.63■■□□□ 1.05
HOXD3-204ENST00000459979 CCPG1Q9ULG6 757 aa21.63■■□□□ 1.05
HOXD3-204ENST00000459979 LAMA2P24043 3122 aaKnown RBP21.63■■□□□ 1.05
HOXD3-204ENST00000459979 SLC27A2O14975 620 aa21.62■■□□□ 1.05
HOXD3-204ENST00000459979 PARP1P09874 1014 aaKnown RBP21.62■■□□□ 1.05
HOXD3-204ENST00000459979 GOLGA8HP0CJ92 632 aa21.62■■□□□ 1.05
HOXD3-204ENST00000459979 SART3Q15020 963 aaKnown RBP21.62■■□□□ 1.05
HOXD3-204ENST00000459979 FAM133AQ8N9E0 248 aa21.62■■□□□ 1.05
HOXD3-204ENST00000459979 FGD4Q96M96 766 aa21.62■■□□□ 1.05
HOXD3-204ENST00000459979 A0A1W2PQ45 241 aaPredicted RBP21.61■■□□□ 1.05
HOXD3-204ENST00000459979 A0A1W2PQY0 241 aa21.61■■□□□ 1.05
HOXD3-204ENST00000459979 ERICH2A1L162 156 aa21.61■■□□□ 1.05
HOXD3-204ENST00000459979 IFIT3O14879 490 aaKnown RBP21.61■■□□□ 1.05
HOXD3-204ENST00000459979 AKR1A1P14550 325 aa21.61■■□□□ 1.05
HOXD3-204ENST00000459979 ANTXR2P58335 489 aa21.61■■□□□ 1.05
HOXD3-204ENST00000459979 C1orf53Q5VUE5 145 aa21.61■■□□□ 1.05
HOXD3-204ENST00000459979 CREB3L3Q68CJ9 461 aa21.61■■□□□ 1.05
HOXD3-204ENST00000459979 RNF180Q86T96 592 aa21.61■■□□□ 1.05
HOXD3-204ENST00000459979 IGDCC4Q8TDY8 1250 aa21.61■■□□□ 1.05
HOXD3-204ENST00000459979 PQBP1O60828 265 aaKnown RBP21.6■■□□□ 1.05
HOXD3-204ENST00000459979 MUM1L1Q5H9M0 696 aa21.6■■□□□ 1.05
HOXD3-204ENST00000459979 UBA5Q9GZZ9 404 aa21.6■■□□□ 1.05
HOXD3-204ENST00000459979 MAF1Q9H063 256 aa21.6■■□□□ 1.05
HOXD3-204ENST00000459979 CNPY2Q9Y2B0 182 aa21.6■■□□□ 1.05
HOXD3-204ENST00000459979 PALM3A6NDB9 673 aaPredicted RBP21.59■■□□□ 1.05
HOXD3-204ENST00000459979 ADAMTS4O75173 837 aa21.59■■□□□ 1.05
HOXD3-204ENST00000459979 SNAI1O95863 264 aaPredicted RBP21.59■■□□□ 1.05
HOXD3-204ENST00000459979 CLTBP09497 229 aa21.59■■□□□ 1.05
HOXD3-204ENST00000459979 EPHB4P54760 987 aa21.59■■□□□ 1.05
HOXD3-204ENST00000459979 IRX5P78411 483 aaPredicted RBP21.59■■□□□ 1.05
HOXD3-204ENST00000459979 WTAPQ15007 396 aa21.59■■□□□ 1.05
HOXD3-204ENST00000459979 RNF20Q5VTR2 975 aa21.59■■□□□ 1.05
HOXD3-204ENST00000459979 PHF6Q8IWS0 365 aaKnown RBP eCLIP21.59■■□□□ 1.05
HOXD3-204ENST00000459979 CYP39A1Q9NYL5 469 aa21.59■■□□□ 1.05
HOXD3-204ENST00000459979 ZHX1Q9UKY1 873 aaPredicted RBP21.59■■□□□ 1.05
HOXD3-204ENST00000459979 SYNRGQ9UMZ2 1314 aa21.58■■□□□ 1.05
HOXD3-204ENST00000459979 A0A0C4DFX4 3053 aa21.58■■□□□ 1.05
HOXD3-204ENST00000459979 MCM5P33992 734 aa21.58■■□□□ 1.05
HOXD3-204ENST00000459979 CNTN2Q02246 1040 aa21.58■■□□□ 1.05
HOXD3-204ENST00000459979 TROAPQ12815 778 aa21.58■■□□□ 1.05
HOXD3-204ENST00000459979 TSGA10IPQ3SY00 556 aa21.58■■□□□ 1.05
HOXD3-204ENST00000459979 ADGRF4Q8IZF3 695 aa21.58■■□□□ 1.05
HOXD3-204ENST00000459979 CLEC4DQ8WXI8 215 aa21.58■■□□□ 1.05
HOXD3-204ENST00000459979 CDX2Q99626 313 aaPredicted RBP21.58■■□□□ 1.05
HOXD3-204ENST00000459979 CPVLQ9H3G5 476 aa21.58■■□□□ 1.05
HOXD3-204ENST00000459979 MAD2L2Q9UI95 211 aa21.58■■□□□ 1.05
HOXD3-204ENST00000459979 MYADML2A6NDP7 307 aa21.57■■□□□ 1.04
HOXD3-204ENST00000459979 SOWAHBA6NEL2 793 aa21.57■■□□□ 1.04
HOXD3-204ENST00000459979 GRM4Q14833 912 aa21.57■■□□□ 1.04
HOXD3-204ENST00000459979 TMEM67Q5HYA8 995 aa21.57■■□□□ 1.04
HOXD3-204ENST00000459979 CHST3Q7LGC8 479 aa21.57■■□□□ 1.04
HOXD3-204ENST00000459979 RGS22Q8NE09 1264 aa21.57■■□□□ 1.04
HOXD3-204ENST00000459979 TMEM87BQ96K49 555 aa21.57■■□□□ 1.04
HOXD3-204ENST00000459979 COL25A1Q9BXS0 654 aaPredicted RBP21.57■■□□□ 1.04
HOXD3-204ENST00000459979 SEMA6BQ9H3T3 888 aa21.57■■□□□ 1.04
HOXD3-204ENST00000459979 ABHD16BQ9H3Z7 469 aa21.57■■□□□ 1.04
HOXD3-204ENST00000459979 JMJD4Q9H9V9 463 aa21.57■■□□□ 1.04
HOXD3-204ENST00000459979 SENP2Q9HC62 589 aa21.57■■□□□ 1.04
HOXD3-204ENST00000459979 MYH6P13533 1939 aa21.57■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms