RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 ZNF213O14771 459 aa8.33□□□□□ -1.08
VPS41-208ENST00000448833 ICAM1P05362 532 aa8.33□□□□□ -1.08
VPS41-208ENST00000448833 HSPD1P10809 573 aaKnown RBP8.33□□□□□ -1.08
VPS41-208ENST00000448833 ALAS1P13196 640 aa8.33□□□□□ -1.08
VPS41-208ENST00000448833 NKX3-2P78367 333 aa8.33□□□□□ -1.08
VPS41-208ENST00000448833 SMAD3P84022 425 aaKnown RBP8.33□□□□□ -1.08
VPS41-208ENST00000448833 TNFAIP2Q03169 654 aa8.33□□□□□ -1.08
VPS41-208ENST00000448833 CTDSPL2Q05D32 466 aa8.33□□□□□ -1.08
VPS41-208ENST00000448833 ZNF697Q5TEC3 545 aa8.33□□□□□ -1.08
VPS41-208ENST00000448833 BTNL9Q6UXG8 535 aa8.33□□□□□ -1.08
VPS41-208ENST00000448833 NOL8Q76FK4 1167 aaKnown RBP8.33□□□□□ -1.08
VPS41-208ENST00000448833 IQCA1Q86XH1 822 aa8.33□□□□□ -1.08
VPS41-208ENST00000448833 SMC5Q8IY18 1101 aa8.33□□□□□ -1.08
VPS41-208ENST00000448833 CCDC144CPQ8IYA2 1237 aa8.33□□□□□ -1.08
VPS41-208ENST00000448833 FAM133AQ8N9E0 248 aa8.33□□□□□ -1.08
VPS41-208ENST00000448833 ESR2Q92731 530 aa8.33□□□□□ -1.08
VPS41-208ENST00000448833 BADQ92934 168 aa8.33□□□□□ -1.08
VPS41-208ENST00000448833 RILPL2Q969X0 211 aa8.33□□□□□ -1.08
VPS41-208ENST00000448833 UPF3AQ9H1J1 476 aaKnown RBP8.33□□□□□ -1.08
VPS41-208ENST00000448833 OSBPL3Q9H4L5 887 aa8.33□□□□□ -1.08
VPS41-208ENST00000448833 A1CFQ9NQ94 594 aaKnown RBP8.33□□□□□ -1.08
VPS41-208ENST00000448833 IL17RBQ9NRM6 502 aa8.33□□□□□ -1.08
VPS41-208ENST00000448833 HOMER2Q9NSB8 354 aa8.33□□□□□ -1.08
VPS41-208ENST00000448833 CTNNA3Q9UI47 895 aa8.33□□□□□ -1.08
VPS41-208ENST00000448833 CCPG1Q9ULG6 757 aa8.33□□□□□ -1.08
VPS41-208ENST00000448833 PRR12Q9ULL5 1215 aa8.33□□□□□ -1.08
VPS41-208ENST00000448833 CCDC171Q6TFL3 1326 aa8.32□□□□□ -1.08
VPS41-208ENST00000448833 TMEM265A0A087WTH1 108 aa8.32□□□□□ -1.08
VPS41-208ENST00000448833 A0A0U1RQG5 324 aaPredicted RBP8.32□□□□□ -1.08
VPS41-208ENST00000448833 PQBP1O60828 265 aaKnown RBP8.32□□□□□ -1.08
VPS41-208ENST00000448833 TIMP1P01033 207 aa8.32□□□□□ -1.08
VPS41-208ENST00000448833 ASGR1P07306 291 aa8.32□□□□□ -1.08
VPS41-208ENST00000448833 FPGSQ05932 587 aa8.32□□□□□ -1.08
VPS41-208ENST00000448833 SHHQ15465 462 aa8.32□□□□□ -1.08
VPS41-208ENST00000448833 CCDC96Q2M329 555 aa8.32□□□□□ -1.08
VPS41-208ENST00000448833 BRDTQ58F21 947 aaPredicted RBP8.32□□□□□ -1.08
VPS41-208ENST00000448833 RRP12Q5JTH9 1297 aaKnown RBP8.32□□□□□ -1.08
VPS41-208ENST00000448833 AKNAD1Q5T1N1 836 aa8.32□□□□□ -1.08
VPS41-208ENST00000448833 GPATCH4Q5T3I0 446 aaKnown RBP8.32□□□□□ -1.08
VPS41-208ENST00000448833 CCSAPQ6IQ19 270 aaPredicted RBP8.32□□□□□ -1.08
VPS41-208ENST00000448833 KCTD1Q719H9 257 aa8.32□□□□□ -1.08
VPS41-208ENST00000448833 CHD1LQ86WJ1 897 aa8.32□□□□□ -1.08
VPS41-208ENST00000448833 DGKHQ86XP1 1220 aa8.32□□□□□ -1.08
VPS41-208ENST00000448833 TMEM199Q8N511 208 aa8.32□□□□□ -1.08
VPS41-208ENST00000448833 AGBL1Q96MI9 1066 aa8.32□□□□□ -1.08
VPS41-208ENST00000448833 LNPKQ9C0E8 428 aa8.32□□□□□ -1.08
VPS41-208ENST00000448833 VTA1Q9NP79 307 aa8.32□□□□□ -1.08
VPS41-208ENST00000448833 CYP39A1Q9NYL5 469 aa8.32□□□□□ -1.08
VPS41-208ENST00000448833 ZNF536O15090 1300 aa8.31□□□□□ -1.08
VPS41-208ENST00000448833 LAMA4Q16363 1823 aa8.31□□□□□ -1.08
VPS41-208ENST00000448833 TRIM43BA6NCK2 446 aa8.31□□□□□ -1.08
VPS41-208ENST00000448833 ARVCFO00192 962 aa8.31□□□□□ -1.08
VPS41-208ENST00000448833 FOXP2O15409 715 aa8.31□□□□□ -1.08
VPS41-208ENST00000448833 KPNA6O60684 536 aa8.31□□□□□ -1.08
VPS41-208ENST00000448833 SDSP20132 328 aa8.31□□□□□ -1.08
VPS41-208ENST00000448833 CDK7P50613 346 aa8.31□□□□□ -1.08
VPS41-208ENST00000448833 CNTN2Q02246 1040 aa8.31□□□□□ -1.08
VPS41-208ENST00000448833 NUCB1Q02818 461 aa8.31□□□□□ -1.08
VPS41-208ENST00000448833 FAAP100Q0VG06 881 aa8.31□□□□□ -1.08
VPS41-208ENST00000448833 PPIGQ13427 754 aaKnown RBP eCLIP8.31□□□□□ -1.08
VPS41-208ENST00000448833 VPS53Q5VIR6 699 aa8.31□□□□□ -1.08
VPS41-208ENST00000448833 SYDE2Q5VT97 1194 aa8.31□□□□□ -1.08
VPS41-208ENST00000448833 MFSD5Q6N075 450 aa8.31□□□□□ -1.08
VPS41-208ENST00000448833 RGS22Q8NE09 1264 aa8.31□□□□□ -1.08
VPS41-208ENST00000448833 TRIM43Q96BQ3 446 aaPredicted RBP8.31□□□□□ -1.08
VPS41-208ENST00000448833 RNPC3Q96LT9 517 aaKnown RBP8.31□□□□□ -1.08
VPS41-208ENST00000448833 FAM227BQ96M60 508 aa8.31□□□□□ -1.08
VPS41-208ENST00000448833 TMEM47Q9BQJ4 181 aa8.31□□□□□ -1.08
VPS41-208ENST00000448833 MTIF3Q9H2K0 278 aaKnown RBP8.31□□□□□ -1.08
VPS41-208ENST00000448833 RANBP17Q9H2T7 1088 aaKnown RBP8.31□□□□□ -1.08
VPS41-208ENST00000448833 CNNM2Q9H8M5 875 aa8.31□□□□□ -1.08
VPS41-208ENST00000448833 DIAPH3Q9NSV4 1193 aa8.31□□□□□ -1.08
VPS41-208ENST00000448833 RAD50Q92878 1312 aa8.3□□□□□ -1.08
VPS41-208ENST00000448833 A0A0D9SFI3 127 aa8.3□□□□□ -1.08
VPS41-208ENST00000448833 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.3□□□□□ -1.08
VPS41-208ENST00000448833 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.3□□□□□ -1.08
VPS41-208ENST00000448833 SOWAHBA6NEL2 793 aa8.3□□□□□ -1.08
VPS41-208ENST00000448833 NKRFO15226 690 aaKnown RBP eCLIP8.3□□□□□ -1.08
VPS41-208ENST00000448833 NMT2O60551 498 aa8.3□□□□□ -1.08
VPS41-208ENST00000448833 CPT1AP50416 773 aa8.3□□□□□ -1.08
VPS41-208ENST00000448833 TRAF1Q13077 416 aa8.3□□□□□ -1.08
VPS41-208ENST00000448833 NMIQ13287 307 aaPredicted RBP8.3□□□□□ -1.08
VPS41-208ENST00000448833 FSCN1Q16658 493 aaKnown RBP8.3□□□□□ -1.08
VPS41-208ENST00000448833 IMMTQ16891 758 aaKnown RBP8.3□□□□□ -1.08
VPS41-208ENST00000448833 B4GALNT3Q6L9W6 998 aa8.3□□□□□ -1.08
VPS41-208ENST00000448833 NSMFQ6X4W1 530 aa8.3□□□□□ -1.08
VPS41-208ENST00000448833 Q7L0L9 218 aa8.3□□□□□ -1.08
VPS41-208ENST00000448833 SH3RF1Q7Z6J0 888 aa8.3□□□□□ -1.08
VPS41-208ENST00000448833 TLK2Q86UE8 772 aa8.3□□□□□ -1.08
VPS41-208ENST00000448833 DNERQ8NFT8 737 aa8.3□□□□□ -1.08
VPS41-208ENST00000448833 MORC4Q8TE76 937 aa8.3□□□□□ -1.08
VPS41-208ENST00000448833 KRT23Q9C075 422 aa8.3□□□□□ -1.08
VPS41-208ENST00000448833 KATNBL1Q9H079 304 aa8.3□□□□□ -1.08
VPS41-208ENST00000448833 INCENPQ9NQS7 918 aa8.3□□□□□ -1.08
VPS41-208ENST00000448833 GPHNQ9NQX3 736 aaPredicted RBP8.3□□□□□ -1.08
VPS41-208ENST00000448833 POLR3EQ9NVU0 708 aa8.3□□□□□ -1.08
VPS41-208ENST00000448833 MTMR7Q9Y216 660 aa8.3□□□□□ -1.08
VPS41-208ENST00000448833 WDR19Q8NEZ3 1342 aa8.29□□□□□ -1.08
VPS41-208ENST00000448833 KIAA1217Q5T5P2 1943 aa8.29□□□□□ -1.08
VPS41-208ENST00000448833 PTPDC1A2A3K4 754 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms