RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 TEX2Q8IWB9 1127 aa23.78■■□□□ 1.4
CHD3-204ENST00000439235 CPXCR1Q8N123 301 aa23.78■■□□□ 1.4
CHD3-204ENST00000439235 FOXD4L4Q8WXT5 416 aaPredicted RBP23.78■■□□□ 1.4
CHD3-204ENST00000439235 TEX13BQ9BXU2 312 aa23.78■■□□□ 1.4
CHD3-204ENST00000439235 PCDHA4Q9UN74 947 aa23.78■■□□□ 1.4
CHD3-204ENST00000439235 NOGQ13253 232 aa23.77■■□□□ 1.4
CHD3-204ENST00000439235 BLIDQ8IZY5 108 aa23.77■■□□□ 1.4
CHD3-204ENST00000439235 FAM43AQ8N2R8 423 aa23.77■■□□□ 1.4
CHD3-204ENST00000439235 SMCR8Q8TEV9 937 aaPredicted RBP23.77■■□□□ 1.4
CHD3-204ENST00000439235 CUL5Q93034 780 aa23.77■■□□□ 1.4
CHD3-204ENST00000439235 AGBL1Q96MI9 1066 aa23.77■■□□□ 1.4
CHD3-204ENST00000439235 FOXP1Q9H334 677 aaPredicted RBP23.77■■□□□ 1.4
CHD3-204ENST00000439235 ZNF214Q9UL59 606 aaPredicted RBP23.77■■□□□ 1.4
CHD3-204ENST00000439235 ATP6V1DQ9Y5K8 247 aa23.77■■□□□ 1.4
CHD3-204ENST00000439235 BAZ2BQ9UIF8 2168 aaKnown RBP23.76■■□□□ 1.39
CHD3-204ENST00000439235 MRPL12P52815 198 aaKnown RBP23.76■■□□□ 1.39
CHD3-204ENST00000439235 RESTQ13127 1097 aa23.76■■□□□ 1.39
CHD3-204ENST00000439235 GRM1Q13255 1194 aa23.76■■□□□ 1.39
CHD3-204ENST00000439235 TMEM132BQ14DG7 1078 aa23.76■■□□□ 1.39
CHD3-204ENST00000439235 NPY5RQ15761 445 aa23.76■■□□□ 1.39
CHD3-204ENST00000439235 TKFCQ3LXA3 575 aa23.76■■□□□ 1.39
CHD3-204ENST00000439235 BRAPQ7Z569 592 aa23.76■■□□□ 1.39
CHD3-204ENST00000439235 FERMT3Q86UX7 667 aa23.76■■□□□ 1.39
CHD3-204ENST00000439235 PTPN18Q99952 460 aa23.76■■□□□ 1.39
CHD3-204ENST00000439235 RIC8AQ9NPQ8 531 aa23.76■■□□□ 1.39
CHD3-204ENST00000439235 SNRNP48Q6IEG0 339 aaKnown RBP23.75■■□□□ 1.39
CHD3-204ENST00000439235 CAPNS2Q96L46 248 aa23.75■■□□□ 1.39
CHD3-204ENST00000439235 PSTPIP2Q9H939 334 aa23.75■■□□□ 1.39
CHD3-204ENST00000439235 RABGAP1Q9Y3P9 1069 aa23.75■■□□□ 1.39
CHD3-204ENST00000439235 BTBD18B2RXH4 712 aa23.74■■□□□ 1.39
CHD3-204ENST00000439235 ALAS1P13196 640 aa23.74■■□□□ 1.39
CHD3-204ENST00000439235 U2AF2P26368 475 aaKnown RBP eCLIP23.74■■□□□ 1.39
CHD3-204ENST00000439235 COPB2P35606 906 aa23.74■■□□□ 1.39
CHD3-204ENST00000439235 STAT3P40763 770 aa23.74■■□□□ 1.39
CHD3-204ENST00000439235 GCLCP48506 637 aaPredicted RBP23.74■■□□□ 1.39
CHD3-204ENST00000439235 PLS1Q14651 629 aa23.74■■□□□ 1.39
CHD3-204ENST00000439235 IFNL1Q8IU54 200 aa23.74■■□□□ 1.39
CHD3-204ENST00000439235 REM2Q8IYK8 340 aaPredicted RBP23.74■■□□□ 1.39
CHD3-204ENST00000439235 PAGR1Q9BTK6 254 aa23.74■■□□□ 1.39
CHD3-204ENST00000439235 IGF2BP3O00425 579 aaKnown RBP eCLIP23.73■■□□□ 1.39
CHD3-204ENST00000439235 CYP2C8P10632 490 aa23.73■■□□□ 1.39
CHD3-204ENST00000439235 MCTP2Q6DN12 878 aa23.73■■□□□ 1.39
CHD3-204ENST00000439235 MCF2L2Q86YR7 1114 aa23.73■■□□□ 1.39
CHD3-204ENST00000439235 NOSTRINQ8IVI9 506 aa23.73■■□□□ 1.39
CHD3-204ENST00000439235 REXO1Q8N1G1 1221 aaKnown RBP23.73■■□□□ 1.39
CHD3-204ENST00000439235 OXER1Q8TDS5 423 aa23.73■■□□□ 1.39
CHD3-204ENST00000439235 BTBD7Q9P203 1132 aa23.73■■□□□ 1.39
CHD3-204ENST00000439235 KIF28PB7ZC32 967 aa23.72■■□□□ 1.39
CHD3-204ENST00000439235 TAL1P17542 331 aaPredicted RBP23.72■■□□□ 1.39
CHD3-204ENST00000439235 TM4SF4P48230 202 aa23.72■■□□□ 1.39
CHD3-204ENST00000439235 NR5A1Q13285 461 aa23.72■■□□□ 1.39
CHD3-204ENST00000439235 SAMD3Q8N6K7 520 aa23.72■■□□□ 1.39
CHD3-204ENST00000439235 SPATC1LQ9H0A9 340 aa23.72■■□□□ 1.39
CHD3-204ENST00000439235 RNF146Q9NTX7 359 aa23.72■■□□□ 1.39
CHD3-204ENST00000439235 CNMDO75829 334 aa23.71■■□□□ 1.39
CHD3-204ENST00000439235 TAF1CQ15572 869 aaPredicted RBP23.71■■□□□ 1.39
CHD3-204ENST00000439235 KRT25Q7Z3Z0 450 aa23.71■■□□□ 1.39
CHD3-204ENST00000439235 RIOX2Q8IUF8 465 aa23.71■■□□□ 1.39
CHD3-204ENST00000439235 TNS4Q8IZW8 715 aa23.71■■□□□ 1.39
CHD3-204ENST00000439235 TRERF1Q96PN7 1200 aa23.71■■□□□ 1.39
CHD3-204ENST00000439235 MAF1Q9H063 256 aa23.71■■□□□ 1.39
CHD3-204ENST00000439235 HOMER2Q9NSB8 354 aa23.71■■□□□ 1.39
CHD3-204ENST00000439235 RBPJLQ9UBG7 517 aa23.71■■□□□ 1.39
CHD3-204ENST00000439235 CCDC194A0A1B0GVG4 234 aa23.7■■□□□ 1.38
CHD3-204ENST00000439235 GCOM1H8Y6P7 765 aaPredicted RBP23.7■■□□□ 1.38
CHD3-204ENST00000439235 M0R2N6 131 aa23.7■■□□□ 1.38
CHD3-204ENST00000439235 PIK3CDO00329 1044 aa23.7■■□□□ 1.38
CHD3-204ENST00000439235 OPLAHO14841 1288 aa23.7■■□□□ 1.38
CHD3-204ENST00000439235 SLC25A27O95847 323 aa23.7■■□□□ 1.38
CHD3-204ENST00000439235 POLR2MP0CAP2 368 aa23.7■■□□□ 1.38
CHD3-204ENST00000439235 POTEEQ6S8J3 1075 aa23.7■■□□□ 1.38
CHD3-204ENST00000439235 CHST13Q8NET6 341 aa23.7■■□□□ 1.38
CHD3-204ENST00000439235 CLEC4DQ8WXI8 215 aa23.7■■□□□ 1.38
CHD3-204ENST00000439235 TNPO1Q92973 898 aaKnown RBP23.7■■□□□ 1.38
CHD3-204ENST00000439235 TNFRSF25Q93038 417 aa23.7■■□□□ 1.38
CHD3-204ENST00000439235 ACAD9Q9H845 621 aa23.7■■□□□ 1.38
CHD3-204ENST00000439235 FBXO40Q9UH90 709 aa23.7■■□□□ 1.38
CHD3-204ENST00000439235 PCDHA6Q9UN73 950 aa23.7■■□□□ 1.38
CHD3-204ENST00000439235 PCDHA8Q9Y5H6 950 aa23.7■■□□□ 1.38
CHD3-204ENST00000439235 COL11A1P12107 1806 aaPredicted RBP23.7■■□□□ 1.38
CHD3-204ENST00000439235 ALDH1A1P00352 501 aa23.69■■□□□ 1.38
CHD3-204ENST00000439235 CLK2P49760 499 aaKnown RBP23.69■■□□□ 1.38
CHD3-204ENST00000439235 ERVK-9P63128 1117 aa23.69■■□□□ 1.38
CHD3-204ENST00000439235 ERVK-24P63145 666 aa23.69■■□□□ 1.38
CHD3-204ENST00000439235 AP3B2Q13367 1082 aa23.69■■□□□ 1.38
CHD3-204ENST00000439235 JMYQ8N9B5 988 aa23.69■■□□□ 1.38
CHD3-204ENST00000439235 MAP3K20Q9NYL2 800 aaKnown RBP23.69■■□□□ 1.38
CHD3-204ENST00000439235 MORF4L1Q9UBU8 362 aa23.69■■□□□ 1.38
CHD3-204ENST00000439235 NOL7Q9UMY1 257 aaKnown RBP23.69■■□□□ 1.38
CHD3-204ENST00000439235 NFIBO00712 420 aa23.68■■□□□ 1.38
CHD3-204ENST00000439235 MEIS2O14770 477 aa23.68■■□□□ 1.38
CHD3-204ENST00000439235 CFBP00751 764 aa23.68■■□□□ 1.38
CHD3-204ENST00000439235 CCNA1P78396 465 aa23.68■■□□□ 1.38
CHD3-204ENST00000439235 GHRHRQ02643 423 aa23.68■■□□□ 1.38
CHD3-204ENST00000439235 UBE2SQ16763 222 aa23.68■■□□□ 1.38
CHD3-204ENST00000439235 MUM1L1Q5H9M0 696 aa23.68■■□□□ 1.38
CHD3-204ENST00000439235 MYSM1Q5VVJ2 828 aa23.68■■□□□ 1.38
CHD3-204ENST00000439235 GPRC5AQ8NFJ5 357 aa23.68■■□□□ 1.38
CHD3-204ENST00000439235 RASGRP4Q8TDF6 673 aa23.68■■□□□ 1.38
CHD3-204ENST00000439235 ZNF396Q96N95 335 aaPredicted RBP23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms