RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 POTEB2H3BUK9 544 aa21.69■■□□□ 1.06
SHH-203ENST00000435425 NFIBO00712 420 aa21.69■■□□□ 1.06
SHH-203ENST00000435425 CALM1P0DP23 149 aa21.69■■□□□ 1.06
SHH-203ENST00000435425 CALM2P0DP24 149 aa21.69■■□□□ 1.06
SHH-203ENST00000435425 CALM3P0DP25 149 aa21.69■■□□□ 1.06
SHH-203ENST00000435425 CNTN2Q02246 1040 aa21.69■■□□□ 1.06
SHH-203ENST00000435425 SLC35G1Q2M3R5 365 aa21.69■■□□□ 1.06
SHH-203ENST00000435425 DHX30Q7L2E3 1194 aaKnown RBP eCLIP21.69■■□□□ 1.06
SHH-203ENST00000435425 MICU3Q86XE3 530 aa21.69■■□□□ 1.06
SHH-203ENST00000435425 U2AF1L4Q8WU68 220 aaKnown RBP21.69■■□□□ 1.06
SHH-203ENST00000435425 PIGSQ96S52 555 aa21.69■■□□□ 1.06
SHH-203ENST00000435425 BRPF3Q9ULD4 1205 aa21.69■■□□□ 1.06
SHH-203ENST00000435425 CENPFP49454 3210 aa21.68■■□□□ 1.06
SHH-203ENST00000435425 KIAA0100Q14667 2235 aaKnown RBP21.68■■□□□ 1.06
SHH-203ENST00000435425 PTPDC1A2A3K4 754 aa21.68■■□□□ 1.06
SHH-203ENST00000435425 SEC24BO95487 1268 aa21.68■■□□□ 1.06
SHH-203ENST00000435425 TFRCP02786 760 aaKnown RBP21.68■■□□□ 1.06
SHH-203ENST00000435425 RPS6KB1P23443 525 aa21.68■■□□□ 1.06
SHH-203ENST00000435425 BAATQ14032 418 aaPredicted RBP21.68■■□□□ 1.06
SHH-203ENST00000435425 SGMS1Q86VZ5 419 aa21.68■■□□□ 1.06
SHH-203ENST00000435425 CMTR1Q8N1G2 835 aaKnown RBP21.68■■□□□ 1.06
SHH-203ENST00000435425 CLEC4DQ8WXI8 215 aa21.68■■□□□ 1.06
SHH-203ENST00000435425 MAP3K14Q99558 947 aa21.68■■□□□ 1.06
SHH-203ENST00000435425 TINF2Q9BSI4 451 aa21.68■■□□□ 1.06
SHH-203ENST00000435425 RIOX1Q9H6W3 641 aa21.68■■□□□ 1.06
SHH-203ENST00000435425 PAK6Q9NQU5 681 aaPredicted RBP21.68■■□□□ 1.06
SHH-203ENST00000435425 GTF3C3Q9Y5Q9 886 aa21.68■■□□□ 1.06
SHH-203ENST00000435425 PFASO15067 1338 aa21.68■■□□□ 1.06
SHH-203ENST00000435425 MCM3APO60318 1980 aa21.68■■□□□ 1.06
SHH-203ENST00000435425 ABCB11O95342 1321 aa21.67■■□□□ 1.06
SHH-203ENST00000435425 KLF18A0A0U1RQI7 1052 aa21.67■■□□□ 1.06
SHH-203ENST00000435425 CYTH3O43739 400 aa21.67■■□□□ 1.06
SHH-203ENST00000435425 PLEKHA8P1O95397 391 aa21.67■■□□□ 1.06
SHH-203ENST00000435425 SGPL1O95470 568 aa21.67■■□□□ 1.06
SHH-203ENST00000435425 GJA8P48165 433 aa21.67■■□□□ 1.06
SHH-203ENST00000435425 APOA5Q6Q788 366 aa21.67■■□□□ 1.06
SHH-203ENST00000435425 FANCBQ8NB91 859 aa21.67■■□□□ 1.06
SHH-203ENST00000435425 TRPV1Q8NER1 839 aa21.67■■□□□ 1.06
SHH-203ENST00000435425 BRF1Q92994 677 aa21.67■■□□□ 1.06
SHH-203ENST00000435425 PURBQ96QR8 312 aaKnown RBP21.67■■□□□ 1.06
SHH-203ENST00000435425 CYP39A1Q9NYL5 469 aa21.67■■□□□ 1.06
SHH-203ENST00000435425 ZBTB5O15062 677 aa21.66■■□□□ 1.06
SHH-203ENST00000435425 ZBTB43O43298 467 aa21.66■■□□□ 1.06
SHH-203ENST00000435425 CALML3P27482 149 aa21.66■■□□□ 1.06
SHH-203ENST00000435425 RGS19P49795 217 aa21.66■■□□□ 1.06
SHH-203ENST00000435425 GNAQP50148 359 aa21.66■■□□□ 1.06
SHH-203ENST00000435425 APOBRQ0VD83 1088 aa21.66■■□□□ 1.06
SHH-203ENST00000435425 RNF207Q6ZRF8 634 aa21.66■■□□□ 1.06
SHH-203ENST00000435425 RUFY3Q7L099 469 aa21.66■■□□□ 1.06
SHH-203ENST00000435425 CCDC82Q8N4S0 544 aa21.66■■□□□ 1.06
SHH-203ENST00000435425 MTMR8Q96EF0 704 aa21.66■■□□□ 1.06
SHH-203ENST00000435425 AMNQ9BXJ7 453 aa21.66■■□□□ 1.06
SHH-203ENST00000435425 LCTP09848 1927 aa21.66■■□□□ 1.06
SHH-203ENST00000435425 SOWAHBA6NEL2 793 aa21.65■■□□□ 1.06
SHH-203ENST00000435425 EIF5BO60841 1220 aaKnown RBP21.65■■□□□ 1.06
SHH-203ENST00000435425 PPP1R11O60927 126 aaPredicted RBP21.65■■□□□ 1.06
SHH-203ENST00000435425 IGHA2P01877 340 aa21.65■■□□□ 1.06
SHH-203ENST00000435425 CYBAP13498 195 aa21.65■■□□□ 1.06
SHH-203ENST00000435425 SLC30A10Q6XR72 485 aa21.65■■□□□ 1.06
SHH-203ENST00000435425 SRBD1Q8N5C6 995 aaKnown RBP21.65■■□□□ 1.06
SHH-203ENST00000435425 FAM133AQ8N9E0 248 aa21.65■■□□□ 1.06
SHH-203ENST00000435425 SHISA4Q96DD7 197 aa21.65■■□□□ 1.06
SHH-203ENST00000435425 FGD4Q96M96 766 aa21.65■■□□□ 1.06
SHH-203ENST00000435425 UPF3BQ9BZI7 483 aaKnown RBP21.65■■□□□ 1.06
SHH-203ENST00000435425 ZSWIM6Q9HCJ5 1215 aa21.65■■□□□ 1.06
SHH-203ENST00000435425 MRPL11Q9Y3B7 192 aaKnown RBP21.65■■□□□ 1.06
SHH-203ENST00000435425 CYP46A1Q9Y6A2 500 aa21.65■■□□□ 1.06
SHH-203ENST00000435425 GOLGA8AA7E2F4 631 aa21.64■■□□□ 1.05
SHH-203ENST00000435425 GOLGA8BA8MQT2 603 aa21.64■■□□□ 1.05
SHH-203ENST00000435425 ANO1Q5XXA6 986 aa21.64■■□□□ 1.05
SHH-203ENST00000435425 TBC1D5Q92609 795 aa21.64■■□□□ 1.05
SHH-203ENST00000435425 LZTS2Q9BRK4 669 aa21.64■■□□□ 1.05
SHH-203ENST00000435425 PCDHA1Q9Y5I3 950 aa21.64■■□□□ 1.05
SHH-203ENST00000435425 FRMPD3Q5JV73 1810 aa21.64■■□□□ 1.05
SHH-203ENST00000435425 PNMA6FA0A0J9YX94 578 aa21.63■■□□□ 1.05
SHH-203ENST00000435425 MLLT1Q03111 559 aaPredicted RBP21.63■■□□□ 1.05
SHH-203ENST00000435425 RTN1Q16799 776 aa21.63■■□□□ 1.05
SHH-203ENST00000435425 C8orf34Q49A92 452 aa21.63■■□□□ 1.05
SHH-203ENST00000435425 ZNF467Q7Z7K2 595 aaPredicted RBP21.63■■□□□ 1.05
SHH-203ENST00000435425 RRP36Q96EU6 259 aaKnown RBP21.63■■□□□ 1.05
SHH-203ENST00000435425 SPZ1Q9BXG8 430 aa21.63■■□□□ 1.05
SHH-203ENST00000435425 CNPY2Q9Y2B0 182 aa21.63■■□□□ 1.05
SHH-203ENST00000435425 DDX49Q9Y6V7 483 aaKnown RBP21.63■■□□□ 1.05
SHH-203ENST00000435425 hCG_1642624A0A1W2PR95 340 aa21.62■■□□□ 1.05
SHH-203ENST00000435425 SNAI1O95863 264 aaPredicted RBP21.62■■□□□ 1.05
SHH-203ENST00000435425 RPS6P62753 249 aaKnown RBP21.62■■□□□ 1.05
SHH-203ENST00000435425 MAMDC4Q6UXC1 1216 aa21.62■■□□□ 1.05
SHH-203ENST00000435425 TMTC3Q6ZXV5 915 aa21.62■■□□□ 1.05
SHH-203ENST00000435425 ARMCX2Q7L311 632 aa21.62■■□□□ 1.05
SHH-203ENST00000435425 MSL3Q8N5Y2 521 aaKnown RBP21.62■■□□□ 1.05
SHH-203ENST00000435425 TM6SF1Q9BZW5 370 aa21.62■■□□□ 1.05
SHH-203ENST00000435425 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.62■■□□□ 1.05
SHH-203ENST00000435425 SEC63Q9UGP8 760 aaKnown RBP21.62■■□□□ 1.05
SHH-203ENST00000435425 DDX20Q9UHI6 824 aaKnown RBP21.62■■□□□ 1.05
SHH-203ENST00000435425 ZHX1Q9UKY1 873 aaPredicted RBP21.62■■□□□ 1.05
SHH-203ENST00000435425 SYNGAP1Q96PV0 1343 aa21.61■■□□□ 1.05
SHH-203ENST00000435425 SMARCA1P28370 1054 aa21.61■■□□□ 1.05
SHH-203ENST00000435425 MCF2L2Q86YR7 1114 aa21.61■■□□□ 1.05
SHH-203ENST00000435425 LARP6Q9BRS8 491 aaKnown RBP21.61■■□□□ 1.05
SHH-203ENST00000435425 CRISPLD2Q9H0B8 497 aa21.61■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms