RNA–Protein interactions for RNA: ENST00000428704.1

HDAC1-202, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 664 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-202ENST00000428704 ARMT1Q9H993 441 aa10.25□□□□□ -0.77
HDAC1-202ENST00000428704 STARD7Q9NQZ5 370 aa10.25□□□□□ -0.77
HDAC1-202ENST00000428704 TBX21Q9UL17 535 aa10.25□□□□□ -0.77
HDAC1-202ENST00000428704 REV3LO60673 3130 aa10.25□□□□□ -0.77
HDAC1-202ENST00000428704 PPP1R3GB7ZBB8 358 aa10.24□□□□□ -0.77
HDAC1-202ENST00000428704 PRKAB2O43741 272 aa10.24□□□□□ -0.77
HDAC1-202ENST00000428704 MBD4O95243 580 aa10.24□□□□□ -0.77
HDAC1-202ENST00000428704 GDF11O95390 407 aa10.24□□□□□ -0.77
HDAC1-202ENST00000428704 PGK1P00558 417 aa10.24□□□□□ -0.77
HDAC1-202ENST00000428704 HLA-DOAP06340 250 aa10.24□□□□□ -0.77
HDAC1-202ENST00000428704 ALADP13716 330 aa10.24□□□□□ -0.77
HDAC1-202ENST00000428704 SSTR3P32745 418 aaPredicted RBP10.24□□□□□ -0.77
HDAC1-202ENST00000428704 MCM2P49736 904 aa10.24□□□□□ -0.77
HDAC1-202ENST00000428704 PLCD1P51178 756 aa10.24□□□□□ -0.77
HDAC1-202ENST00000428704 RABGGTBP53611 331 aa10.24□□□□□ -0.77
HDAC1-202ENST00000428704 GABPAQ06546 454 aa10.24□□□□□ -0.77
HDAC1-202ENST00000428704 UBE3CQ15386 1083 aa10.24□□□□□ -0.77
HDAC1-202ENST00000428704 USP17L2Q6R6M4 530 aa10.24□□□□□ -0.77
HDAC1-202ENST00000428704 FOXP4Q8IVH2 680 aaPredicted RBP10.24□□□□□ -0.77
HDAC1-202ENST00000428704 GJD3Q8N144 294 aa10.24□□□□□ -0.77
HDAC1-202ENST00000428704 KRTAP3-3Q9BYR6 98 aa10.24□□□□□ -0.77
HDAC1-202ENST00000428704 KRTAP3-2Q9BYR7 98 aa10.24□□□□□ -0.77
HDAC1-202ENST00000428704 CRNKL1Q9BZJ0 848 aaKnown RBP10.24□□□□□ -0.77
HDAC1-202ENST00000428704 PPP1R12CQ9BZL4 782 aa10.24□□□□□ -0.77
HDAC1-202ENST00000428704 DCP1AQ9NPI6 582 aaPredicted RBP10.24□□□□□ -0.77
HDAC1-202ENST00000428704 SLC5A4Q9NY91 659 aa10.24□□□□□ -0.77
HDAC1-202ENST00000428704 ZBTB21Q9ULJ3 1066 aa10.24□□□□□ -0.77
HDAC1-202ENST00000428704 LRRC37A2A6NM11 1700 aa10.24□□□□□ -0.77
HDAC1-202ENST00000428704 TRIM6-TRIM34B2RNG4 842 aa10.23□□□□□ -0.77
HDAC1-202ENST00000428704 USP17L15C9J2P7 530 aa10.23□□□□□ -0.77
HDAC1-202ENST00000428704 USP17L13C9JLJ4 530 aa10.23□□□□□ -0.77
HDAC1-202ENST00000428704 USP17L11C9JVI0 530 aa10.23□□□□□ -0.77
HDAC1-202ENST00000428704 USP17L18D6R9N7 530 aa10.23□□□□□ -0.77
HDAC1-202ENST00000428704 USP17L22D6RA61 530 aa10.23□□□□□ -0.77
HDAC1-202ENST00000428704 USP17L17D6RBQ6 530 aa10.23□□□□□ -0.77
HDAC1-202ENST00000428704 USP17L19D6RCP7 530 aa10.23□□□□□ -0.77
HDAC1-202ENST00000428704 USP17L20D6RJB6 530 aa10.23□□□□□ -0.77
HDAC1-202ENST00000428704 RFXAPO00287 272 aa10.23□□□□□ -0.77
HDAC1-202ENST00000428704 FGBP02675 491 aa10.23□□□□□ -0.77
HDAC1-202ENST00000428704 CYP2D6P10635 497 aa10.23□□□□□ -0.77
HDAC1-202ENST00000428704 MCCP23508 829 aa10.23□□□□□ -0.77
HDAC1-202ENST00000428704 SHMT1P34896 483 aa10.23□□□□□ -0.77
HDAC1-202ENST00000428704 USP17L24Q0WX57 530 aa10.23□□□□□ -0.77
HDAC1-202ENST00000428704 ZYXQ15942 572 aaKnown RBP10.23□□□□□ -0.77
HDAC1-202ENST00000428704 TATDN1Q6P1N9 297 aa10.23□□□□□ -0.77
HDAC1-202ENST00000428704 CRACR2BQ8N4Y2 399 aaPredicted RBP10.23□□□□□ -0.77
HDAC1-202ENST00000428704 KBTBD3Q8NAB2 608 aa10.23□□□□□ -0.77
HDAC1-202ENST00000428704 NUP133Q8WUM0 1156 aa10.23□□□□□ -0.77
HDAC1-202ENST00000428704 RILPL2Q969X0 211 aa10.23□□□□□ -0.77
HDAC1-202ENST00000428704 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.23□□□□□ -0.773e-8■■□□□ 13.2
HDAC1-202ENST00000428704 PUS7LQ9H0K6 701 aaKnown RBP10.23□□□□□ -0.77
HDAC1-202ENST00000428704 SLKQ9H2G2 1235 aaPredicted RBP10.23□□□□□ -0.77
HDAC1-202ENST00000428704 CDHR5Q9HBB8 845 aa10.23□□□□□ -0.77
HDAC1-202ENST00000428704 BTBD7Q9P203 1132 aa10.23□□□□□ -0.77
HDAC1-202ENST00000428704 SERPINB13Q9UIV8 391 aa10.23□□□□□ -0.77
HDAC1-202ENST00000428704 PARP14Q460N5 1801 aa10.23□□□□□ -0.77
HDAC1-202ENST00000428704 PLXNA1Q9UIW2 1896 aa10.23□□□□□ -0.77
HDAC1-202ENST00000428704 WDFY4Q6ZS81 3184 aa10.22□□□□□ -0.77
HDAC1-202ENST00000428704 MYO9BQ13459 2157 aa10.22□□□□□ -0.77
HDAC1-202ENST00000428704 HIP1O00291 1037 aa10.22□□□□□ -0.77
HDAC1-202ENST00000428704 SGSM2O43147 1006 aa10.22□□□□□ -0.77
HDAC1-202ENST00000428704 MYOGP15173 224 aa10.22□□□□□ -0.77
HDAC1-202ENST00000428704 POU3F3P20264 500 aaPredicted RBP10.22□□□□□ -0.77
HDAC1-202ENST00000428704 ACLYP53396 1101 aa10.22□□□□□ -0.77
HDAC1-202ENST00000428704 CLEC17AQ6ZS10 378 aa10.22□□□□□ -0.77
HDAC1-202ENST00000428704 OTOP2Q7RTS6 562 aa10.22□□□□□ -0.77
HDAC1-202ENST00000428704 RUFY2Q8WXA3 655 aa10.22□□□□□ -0.77
HDAC1-202ENST00000428704 EVI5LQ96CN4 794 aa10.22□□□□□ -0.77
HDAC1-202ENST00000428704 PHOX2BQ99453 314 aa10.22□□□□□ -0.77
HDAC1-202ENST00000428704 FEZ1Q99689 392 aa10.22□□□□□ -0.77
HDAC1-202ENST00000428704 TRIM34Q9BYJ4 488 aa10.22□□□□□ -0.77
HDAC1-202ENST00000428704 CERS4Q9HA82 394 aa10.22□□□□□ -0.77
HDAC1-202ENST00000428704 IL23AQ9NPF7 189 aa10.22□□□□□ -0.77
HDAC1-202ENST00000428704 PCDHA11Q9Y5I1 949 aa10.22□□□□□ -0.77
HDAC1-202ENST00000428704 MROH7Q68CQ1 1323 aa10.22□□□□□ -0.77
HDAC1-202ENST00000428704 A0A0G2JMZ2 1700 aa10.21□□□□□ -0.77
HDAC1-202ENST00000428704 CYP2D7A0A087X1C5 515 aa10.21□□□□□ -0.77
HDAC1-202ENST00000428704 STRNO43815 780 aa10.21□□□□□ -0.77
HDAC1-202ENST00000428704 CD2BP2O95400 341 aaKnown RBP10.21□□□□□ -0.77
HDAC1-202ENST00000428704 GH2P01242 217 aa10.21□□□□□ -0.77
HDAC1-202ENST00000428704 GUCY1A2P33402 732 aa10.21□□□□□ -0.77
HDAC1-202ENST00000428704 HSPA4P34932 840 aa10.21□□□□□ -0.77
HDAC1-202ENST00000428704 LSM11P83369 360 aaKnown RBP eCLIP10.21□□□□□ -0.77
HDAC1-202ENST00000428704 DMRTA1Q5VZB9 504 aa10.21□□□□□ -0.77
HDAC1-202ENST00000428704 KRT40Q6A162 431 aa10.21□□□□□ -0.77
HDAC1-202ENST00000428704 TTC6Q86TZ1 520 aa10.21□□□□□ -0.77
HDAC1-202ENST00000428704 OSBP2Q969R2 916 aa10.21□□□□□ -0.77
HDAC1-202ENST00000428704 TSEN34Q9BSV6 310 aaKnown RBP10.21□□□□□ -0.77
HDAC1-202ENST00000428704 NPDC1Q9NQX5 325 aaPredicted RBP10.21□□□□□ -0.77
HDAC1-202ENST00000428704 GINM1Q9NU53 330 aa10.21□□□□□ -0.77
HDAC1-202ENST00000428704 MCM9Q9NXL9 1143 aa10.21□□□□□ -0.77
HDAC1-202ENST00000428704 SLC4A7Q9Y6M7 1214 aa10.21□□□□□ -0.77
HDAC1-202ENST00000428704 MOXD2PA6NHM9 499 aa10.2□□□□□ -0.78
HDAC1-202ENST00000428704 ZBBXA8MT70 800 aa10.2□□□□□ -0.78
HDAC1-202ENST00000428704 M0R2C6 588 aa10.2□□□□□ -0.78
HDAC1-202ENST00000428704 COBLO75128 1261 aa10.2□□□□□ -0.78
HDAC1-202ENST00000428704 PTGDRQ13258 359 aa10.2□□□□□ -0.78
HDAC1-202ENST00000428704 RAB3GAP1Q15042 981 aa10.2□□□□□ -0.78
HDAC1-202ENST00000428704 ZSCAN25Q6NSZ9 544 aa10.2□□□□□ -0.78
HDAC1-202ENST00000428704 LBX2Q6XYB7 198 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms