RNA–Protein interactions for RNA: ENST00000425836.6

VEGFA-209, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,575 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-209ENST00000425836 PTCH2Q9Y6C5 1203 aa28.37■■■□□ 2.13
VEGFA-209ENST00000425836 CNTNAP5Q8WYK1 1306 aa28.36■■■□□ 2.13
VEGFA-209ENST00000425836 MAP2K5Q13163 448 aa28.36■■■□□ 2.13
VEGFA-209ENST00000425836 KCTD2Q14681 263 aa28.36■■■□□ 2.13
VEGFA-209ENST00000425836 FBXO46Q6PJ61 603 aaPredicted RBP28.36■■■□□ 2.13
VEGFA-209ENST00000425836 CLEC4DQ8WXI8 215 aa28.36■■■□□ 2.13
VEGFA-209ENST00000425836 hCG_1642624A0A1W2PR95 340 aa28.35■■■□□ 2.13
VEGFA-209ENST00000425836 PFKFB2O60825 505 aa28.35■■■□□ 2.13
VEGFA-209ENST00000425836 CYP2B6P20813 491 aa28.35■■■□□ 2.13
VEGFA-209ENST00000425836 IRF5Q13568 498 aa28.35■■■□□ 2.13
VEGFA-209ENST00000425836 NTRK3Q16288 839 aa28.35■■■□□ 2.13
VEGFA-209ENST00000425836 RAET1EQ8TD07 263 aa28.35■■■□□ 2.13
VEGFA-209ENST00000425836 MCOLN1Q9GZU1 580 aa28.35■■■□□ 2.13
VEGFA-209ENST00000425836 SLKQ9H2G2 1235 aaPredicted RBP28.35■■■□□ 2.13
VEGFA-209ENST00000425836 PCDHA1Q9Y5I3 950 aa28.35■■■□□ 2.13
VEGFA-209ENST00000425836 NFIBO00712 420 aa28.34■■■□□ 2.13
VEGFA-209ENST00000425836 COBLO75128 1261 aa28.34■■■□□ 2.13
VEGFA-209ENST00000425836 LARGE1O95461 756 aa28.34■■■□□ 2.13
VEGFA-209ENST00000425836 RGS2P41220 211 aa28.34■■■□□ 2.13
VEGFA-209ENST00000425836 ME3Q16798 604 aa28.34■■■□□ 2.13
VEGFA-209ENST00000425836 ANKRD35Q8N283 1001 aa28.34■■■□□ 2.13
VEGFA-209ENST00000425836 SEC63Q9UGP8 760 aaKnown RBP28.34■■■□□ 2.13
VEGFA-209ENST00000425836 V9GY48 417 aaPredicted RBP28.34■■■□□ 2.13
VEGFA-209ENST00000425836 ABCB11O95342 1321 aa28.34■■■□□ 2.13
VEGFA-209ENST00000425836 SCRN1Q12765 414 aa28.33■■■□□ 2.13
VEGFA-209ENST00000425836 A1CFQ9NQ94 594 aaKnown RBP28.33■■■□□ 2.13
VEGFA-209ENST00000425836 MGAMO43451 1857 aa28.33■■■□□ 2.13
VEGFA-209ENST00000425836 PGK2P07205 417 aa28.33■■■□□ 2.12
VEGFA-209ENST00000425836 DPP9Q86TI2 863 aa28.33■■■□□ 2.12
VEGFA-209ENST00000425836 IL27Q8NEV9 243 aa28.33■■■□□ 2.12
VEGFA-209ENST00000425836 DDX11Q96FC9 970 aa28.33■■■□□ 2.12
VEGFA-209ENST00000425836 LIMCH1Q9UPQ0 1083 aa28.33■■■□□ 2.12
VEGFA-209ENST00000425836 MRPL11Q9Y3B7 192 aaKnown RBP28.33■■■□□ 2.12
VEGFA-209ENST00000425836 HOXC6P09630 235 aa28.32■■■□□ 2.12
VEGFA-209ENST00000425836 XRCC5P13010 732 aaKnown RBP28.32■■■□□ 2.12
VEGFA-209ENST00000425836 IFNAR1P17181 557 aa28.32■■■□□ 2.12
VEGFA-209ENST00000425836 TRAF1Q13077 416 aa28.32■■■□□ 2.12
VEGFA-209ENST00000425836 NPLOC4Q8TAT6 608 aa28.32■■■□□ 2.12
VEGFA-209ENST00000425836 APBA2Q99767 749 aa28.32■■■□□ 2.12
VEGFA-209ENST00000425836 DNAJC25-GNG10A0A024R161 153 aa28.31■■■□□ 2.12
VEGFA-209ENST00000425836 ST18O60284 1047 aa28.31■■■□□ 2.12
VEGFA-209ENST00000425836 NSMFQ6X4W1 530 aa28.31■■■□□ 2.12
VEGFA-209ENST00000425836 NECAB1Q8N987 351 aa28.31■■■□□ 2.12
VEGFA-209ENST00000425836 PHKBQ93100 1093 aa28.31■■■□□ 2.12
VEGFA-209ENST00000425836 CYP39A1Q9NYL5 469 aa28.31■■■□□ 2.12
VEGFA-209ENST00000425836 CPLX1O14810 134 aa28.3■■■□□ 2.12
VEGFA-209ENST00000425836 PPFIA3O75145 1194 aa28.3■■■□□ 2.12
VEGFA-209ENST00000425836 PRPF3O43395 683 aaKnown RBP28.29■■■□□ 2.12
VEGFA-209ENST00000425836 ADCY3O60266 1144 aa28.29■■■□□ 2.12
VEGFA-209ENST00000425836 ZNF792Q3KQV3 632 aa28.29■■■□□ 2.12
VEGFA-209ENST00000425836 RGS22Q8NE09 1264 aa28.29■■■□□ 2.12
VEGFA-209ENST00000425836 PXYLP1Q8TE99 480 aa28.29■■■□□ 2.12
VEGFA-209ENST00000425836 PFASO15067 1338 aa28.29■■■□□ 2.12
VEGFA-209ENST00000425836 BAATQ14032 418 aaPredicted RBP28.28■■■□□ 2.12
VEGFA-209ENST00000425836 TBC1D5Q92609 795 aa28.28■■■□□ 2.12
VEGFA-209ENST00000425836 GTF3C6Q969F1 213 aa28.28■■■□□ 2.12
VEGFA-209ENST00000425836 SLC5A4Q9NY91 659 aa28.28■■■□□ 2.12
VEGFA-209ENST00000425836 OPLAHO14841 1288 aa28.28■■■□□ 2.12
VEGFA-209ENST00000425836 ELNP15502 786 aa28.28■■■□□ 2.12
VEGFA-209ENST00000425836 CCL14Q16627 93 aa28.28■■■□□ 2.12
VEGFA-209ENST00000425836 CPLX2Q6PUV4 134 aaKnown RBP28.28■■■□□ 2.12
VEGFA-209ENST00000425836 SLC26A6Q9BXS9 759 aa28.28■■■□□ 2.12
VEGFA-209ENST00000425836 RNF26Q9BY78 433 aaPredicted RBP28.28■■■□□ 2.12
VEGFA-209ENST00000425836 BAZ2BQ9UIF8 2168 aaKnown RBP28.27■■■□□ 2.12
VEGFA-209ENST00000425836 PLXNB2O15031 1838 aa28.27■■■□□ 2.12
VEGFA-209ENST00000425836 PTPDC1A2A3K4 754 aa28.27■■■□□ 2.12
VEGFA-209ENST00000425836 POTEB2H3BUK9 544 aa28.27■■■□□ 2.12
VEGFA-209ENST00000425836 CD2BP2O95400 341 aaKnown RBP28.27■■■□□ 2.12
VEGFA-209ENST00000425836 GRK4P32298 578 aa28.27■■■□□ 2.12
VEGFA-209ENST00000425836 RNF207Q6ZRF8 634 aa28.27■■■□□ 2.12
VEGFA-209ENST00000425836 HEATR3Q7Z4Q2 680 aa28.27■■■□□ 2.12
VEGFA-209ENST00000425836 MCF2L2Q86YR7 1114 aa28.27■■■□□ 2.12
VEGFA-209ENST00000425836 SLAIN1Q8ND83 568 aa28.27■■■□□ 2.12
VEGFA-209ENST00000425836 GPKOWQ92917 476 aaPredicted RBP eCLIP28.27■■■□□ 2.129e-7■□□□□ 11
VEGFA-209ENST00000425836 ZSCAN31Q96LW9 406 aaPredicted RBP28.27■■■□□ 2.12
VEGFA-209ENST00000425836 FLRT1Q9NZU1 646 aa28.27■■■□□ 2.12
VEGFA-209ENST00000425836 DIS3Q9Y2L1 958 aaKnown RBP28.27■■■□□ 2.12
VEGFA-209ENST00000425836 DOCK3Q8IZD9 2030 aa28.27■■■□□ 2.12
VEGFA-209ENST00000425836 CNTN2Q02246 1040 aa28.26■■■□□ 2.11
VEGFA-209ENST00000425836 PKN1Q16512 942 aa28.26■■■□□ 2.11
VEGFA-209ENST00000425836 PFKFB3Q16875 520 aaPredicted RBP28.26■■■□□ 2.11
VEGFA-209ENST00000425836 WWC2Q6AWC2 1192 aa28.26■■■□□ 2.11
VEGFA-209ENST00000425836 SLC30A10Q6XR72 485 aa28.26■■■□□ 2.11
VEGFA-209ENST00000425836 FAM133AQ8N9E0 248 aa28.26■■■□□ 2.11
VEGFA-209ENST00000425836 TRIB2Q92519 343 aa28.26■■■□□ 2.11
VEGFA-209ENST00000425836 MAML3Q96JK9 1138 aa28.26■■■□□ 2.11
VEGFA-209ENST00000425836 RBM27Q9P2N5 1060 aaKnown RBP28.26■■■□□ 2.11
VEGFA-209ENST00000425836 CTDNEP1O95476 244 aa28.25■■■□□ 2.11
VEGFA-209ENST00000425836 RPS6P62753 249 aaKnown RBP28.25■■■□□ 2.11
VEGFA-209ENST00000425836 AKAP17AQ02040 695 aaKnown RBP28.25■■■□□ 2.11
VEGFA-209ENST00000425836 SSRP1Q08945 709 aaKnown RBP28.25■■■□□ 2.11
VEGFA-209ENST00000425836 ST3GAL1Q11201 340 aa28.25■■■□□ 2.11
VEGFA-209ENST00000425836 SLC9C1Q4G0N8 1177 aa28.25■■■□□ 2.11
VEGFA-209ENST00000425836 TRMT44Q8IYL2 757 aaKnown RBP28.25■■■□□ 2.11
VEGFA-209ENST00000425836 SH3TC2Q8TF17 1288 aa28.25■■■□□ 2.11
VEGFA-209ENST00000425836 FGD4Q96M96 766 aa28.25■■■□□ 2.11
VEGFA-209ENST00000425836 MAF1Q9H063 256 aa28.25■■■□□ 2.11
VEGFA-209ENST00000425836 ZNF236Q9UL36 1845 aa28.25■■■□□ 2.11
VEGFA-209ENST00000425836 SMCHD1A6NHR9 2005 aa28.25■■■□□ 2.11
VEGFA-209ENST00000425836 PURBQ96QR8 312 aaKnown RBP28.24■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms