RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 SPATA31A6Q5VVP1 1343 aa13.43□□□□□ -0.26
PTPRN-204ENST00000423636 SHMT1P34896 483 aa13.42□□□□□ -0.26
PTPRN-204ENST00000423636 FBXO38Q6PIJ6 1188 aa13.42□□□□□ -0.26
PTPRN-204ENST00000423636 APTXQ7Z2E3 356 aaKnown RBP13.42□□□□□ -0.26
PTPRN-204ENST00000423636 FCHSD1Q86WN1 690 aa13.42□□□□□ -0.26
PTPRN-204ENST00000423636 JMJD4Q9H9V9 463 aa13.42□□□□□ -0.26
PTPRN-204ENST00000423636 C6orf50Q9HD87 102 aa13.42□□□□□ -0.26
PTPRN-204ENST00000423636 TIAM2Q8IVF5 1701 aa13.42□□□□□ -0.26
PTPRN-204ENST00000423636 ENC1O14682 589 aa13.42□□□□□ -0.26
PTPRN-204ENST00000423636 GYPCP04921 128 aa13.42□□□□□ -0.26
PTPRN-204ENST00000423636 EEF2P13639 858 aaKnown RBP13.42□□□□□ -0.26
PTPRN-204ENST00000423636 MRPS25P82663 173 aaKnown RBP13.42□□□□□ -0.26
PTPRN-204ENST00000423636 TEX35Q5T0J7 233 aa13.42□□□□□ -0.26
PTPRN-204ENST00000423636 KANK3Q6NY19 840 aa13.42□□□□□ -0.26
PTPRN-204ENST00000423636 NELFCDQ8IXH7 590 aa13.42□□□□□ -0.26
PTPRN-204ENST00000423636 CCDC12Q8WUD4 166 aaPredicted RBP13.42□□□□□ -0.26
PTPRN-204ENST00000423636 TRIM34Q9BYJ4 488 aa13.42□□□□□ -0.26
PTPRN-204ENST00000423636 TCP11L1Q9NUJ3 509 aa13.42□□□□□ -0.26
PTPRN-204ENST00000423636 PKD2L1Q9P0L9 805 aa13.42□□□□□ -0.26
PTPRN-204ENST00000423636 SMCHD1A6NHR9 2005 aa13.42□□□□□ -0.26
PTPRN-204ENST00000423636 AKR1B15C9JRZ8 316 aaPredicted RBP13.42□□□□□ -0.26
PTPRN-204ENST00000423636 OR52Z1P0C646 297 aa13.42□□□□□ -0.26
PTPRN-204ENST00000423636 DNA2P51530 1060 aa13.42□□□□□ -0.26
PTPRN-204ENST00000423636 TERF1P54274 439 aa13.42□□□□□ -0.26
PTPRN-204ENST00000423636 EZH2Q15910 746 aaKnown RBP13.42□□□□□ -0.26
PTPRN-204ENST00000423636 NT5DC1Q5TFE4 455 aa13.42□□□□□ -0.26
PTPRN-204ENST00000423636 TRIM65Q6PJ69 517 aa13.42□□□□□ -0.26
PTPRN-204ENST00000423636 NEK8Q86SG6 692 aa13.42□□□□□ -0.26
PTPRN-204ENST00000423636 CYP2W1Q8TAV3 490 aa13.42□□□□□ -0.26
PTPRN-204ENST00000423636 TEKT1Q969V4 418 aa13.42□□□□□ -0.26
PTPRN-204ENST00000423636 VEZTQ9HBM0 779 aa13.42□□□□□ -0.26
PTPRN-204ENST00000423636 ADD3Q9UEY8 706 aaKnown RBP13.42□□□□□ -0.26
PTPRN-204ENST00000423636 DACH1Q9UI36 760 aa13.42□□□□□ -0.26
PTPRN-204ENST00000423636 TBC1D10BQ4KMP7 808 aaPredicted RBP13.41□□□□□ -0.26
PTPRN-204ENST00000423636 ARHGAP29Q52LW3 1261 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 FGFBP2Q9BYJ0 223 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 FZD1Q9UP38 647 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 NID2Q14112 1375 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 SHTN1A0MZ66 631 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 ECE2O60344 883 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 CALCRLQ16602 461 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 DNAAF5Q86Y56 855 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 SPATA20Q8TB22 786 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 TBC1D5Q92609 795 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 GSDMAQ96QA5 445 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 AGPAT5Q9NUQ2 364 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 LRWD1Q9UFC0 647 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 PAXBP1Q9Y5B6 917 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 M0R2N6 131 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 GTPBP6O43824 516 aaPredicted RBP13.41□□□□□ -0.26
PTPRN-204ENST00000423636 EDIL3O43854 480 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 KRT9P35527 623 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 ECE1P42892 770 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 SLC1A4P43007 532 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 CYP4A11Q02928 519 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 RRP1BQ14684 758 aaKnown RBP13.41□□□□□ -0.26
PTPRN-204ENST00000423636 ANKRD40Q6AI12 368 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 SH3BP5LQ7L8J4 393 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 DEFB132Q7Z7B7 95 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 IRF2BP1Q8IU81 584 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 SP8Q8IXZ3 490 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 CCDC148Q8NFR7 591 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 CDK5RAP3Q96JB5 506 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 PRMT6Q96LA8 375 aaPredicted RBP13.41□□□□□ -0.26
PTPRN-204ENST00000423636 DRC1Q96MC2 740 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 MTA3Q9BTC8 594 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 IKZF4Q9H2S9 585 aa13.41□□□□□ -0.26
PTPRN-204ENST00000423636 PCP11498 1178 aaKnown RBP13.4□□□□□ -0.26
PTPRN-204ENST00000423636 COPB1P53618 953 aaKnown RBP13.4□□□□□ -0.26
PTPRN-204ENST00000423636 RCAN1P53805 252 aa13.4□□□□□ -0.26
PTPRN-204ENST00000423636 ETF1P62495 437 aaKnown RBP13.4□□□□□ -0.26
PTPRN-204ENST00000423636 CYP27A1Q02318 531 aa13.4□□□□□ -0.26
PTPRN-204ENST00000423636 PTPROQ16827 1216 aa13.4□□□□□ -0.26
PTPRN-204ENST00000423636 ZNF569Q5MCW4 686 aa13.4□□□□□ -0.26
PTPRN-204ENST00000423636 PSMB7Q99436 277 aa13.4□□□□□ -0.26
PTPRN-204ENST00000423636 SH2D3AQ9BRG2 576 aa13.4□□□□□ -0.26
PTPRN-204ENST00000423636 CRACR2AQ9BSW2 395 aa13.4□□□□□ -0.26
PTPRN-204ENST00000423636 MMTAG2Q9BU76 263 aaKnown RBP13.4□□□□□ -0.26
PTPRN-204ENST00000423636 PLEKHA4Q9H4M7 779 aa13.4□□□□□ -0.26
PTPRN-204ENST00000423636 ADAMTSL1Q8N6G6 1762 aa13.4□□□□□ -0.26
PTPRN-204ENST00000423636 CCDC88AQ3V6T2 1871 aa13.4□□□□□ -0.26
PTPRN-204ENST00000423636 A0A1B0GTH6 734 aa13.4□□□□□ -0.26
PTPRN-204ENST00000423636 E9PMD0 336 aa13.4□□□□□ -0.26
PTPRN-204ENST00000423636 GNAQP50148 359 aa13.4□□□□□ -0.26
PTPRN-204ENST00000423636 CSGALNACT2Q8N6G5 542 aa13.4□□□□□ -0.26
PTPRN-204ENST00000423636 MNS1Q8NEH6 495 aa13.4□□□□□ -0.26
PTPRN-204ENST00000423636 SNX29Q8TEQ0 813 aa13.4□□□□□ -0.26
PTPRN-204ENST00000423636 CCDC34Q96HJ3 373 aa13.4□□□□□ -0.26
PTPRN-204ENST00000423636 ZNF277Q9NRM2 450 aaPredicted RBP13.4□□□□□ -0.26
PTPRN-204ENST00000423636 BMP2KQ9NSY1 1161 aaPredicted RBP13.4□□□□□ -0.26
PTPRN-204ENST00000423636 ZHX1Q9UKY1 873 aaPredicted RBP13.4□□□□□ -0.26
PTPRN-204ENST00000423636 GUCA1BQ9UMX6 200 aa13.4□□□□□ -0.26
PTPRN-204ENST00000423636 BCS1LQ9Y276 419 aa13.4□□□□□ -0.26
PTPRN-204ENST00000423636 SLU7O95391 586 aaKnown RBP13.39□□□□□ -0.27
PTPRN-204ENST00000423636 GH2P01242 217 aa13.39□□□□□ -0.27
PTPRN-204ENST00000423636 ADCY7P51828 1080 aa13.39□□□□□ -0.27
PTPRN-204ENST00000423636 ERVK-24P63145 666 aa13.39□□□□□ -0.27
PTPRN-204ENST00000423636 FILIP1LQ4L180 1135 aa13.39□□□□□ -0.27
PTPRN-204ENST00000423636 TCP11X2Q5H9J9 407 aa13.39□□□□□ -0.27
PTPRN-204ENST00000423636 FKBP15Q5T1M5 1219 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms