RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 PHF20L1A8MW92 1017 aa6.82□□□□□ -1.32
HMGB3-202ENST00000419110 BTBD18B2RXH4 712 aa6.82□□□□□ -1.32
HMGB3-202ENST00000419110 TMEM232C9JQI7 657 aa6.82□□□□□ -1.32
HMGB3-202ENST00000419110 F5H6K3 240 aa6.82□□□□□ -1.32
HMGB3-202ENST00000419110 GTPBP6O43824 516 aaPredicted RBP6.82□□□□□ -1.32
HMGB3-202ENST00000419110 INPP5BP32019 993 aa6.82□□□□□ -1.32
HMGB3-202ENST00000419110 ECE1P42892 770 aa6.82□□□□□ -1.32
HMGB3-202ENST00000419110 CEBPZQ03701 1054 aaKnown RBP6.82□□□□□ -1.32
HMGB3-202ENST00000419110 KLRC3Q07444 240 aa6.82□□□□□ -1.32
HMGB3-202ENST00000419110 NR5A1Q13285 461 aa6.82□□□□□ -1.32
HMGB3-202ENST00000419110 MTMR2Q13614 643 aa6.82□□□□□ -1.32
HMGB3-202ENST00000419110 TTLL12Q14166 644 aaPredicted RBP6.82□□□□□ -1.32
HMGB3-202ENST00000419110 RRP1BQ14684 758 aaKnown RBP6.82□□□□□ -1.32
HMGB3-202ENST00000419110 TTC38Q5R3I4 469 aa6.82□□□□□ -1.32
HMGB3-202ENST00000419110 FAM83BQ5T0W9 1011 aa6.82□□□□□ -1.32
HMGB3-202ENST00000419110 CCDC183Q5T5S1 534 aa6.82□□□□□ -1.32
HMGB3-202ENST00000419110 CAVIN1Q6NZI2 390 aaKnown RBP6.82□□□□□ -1.32
HMGB3-202ENST00000419110 TEX2Q8IWB9 1127 aa6.82□□□□□ -1.32
HMGB3-202ENST00000419110 ADGRF4Q8IZF3 695 aa6.82□□□□□ -1.32
HMGB3-202ENST00000419110 CHURC1Q8WUH1 139 aa6.82□□□□□ -1.32
HMGB3-202ENST00000419110 MRPS27Q92552 414 aaKnown RBP6.82□□□□□ -1.32
HMGB3-202ENST00000419110 NUP88Q99567 741 aaPredicted RBP6.82□□□□□ -1.32
HMGB3-202ENST00000419110 FTOQ9C0B1 505 aaKnown RBP eCLIP6.82□□□□□ -1.32
HMGB3-202ENST00000419110 TANGO6Q9C0B7 1094 aa6.82□□□□□ -1.32
HMGB3-202ENST00000419110 KIAA1683Q9H0B3 1180 aa6.82□□□□□ -1.32
HMGB3-202ENST00000419110 CPVLQ9H3G5 476 aa6.82□□□□□ -1.32
HMGB3-202ENST00000419110 DDX19AQ9NUU7 478 aaKnown RBP6.82□□□□□ -1.32
HMGB3-202ENST00000419110 PNMA2Q9UL42 364 aa6.82□□□□□ -1.32
HMGB3-202ENST00000419110 SCAF8Q9UPN6 1271 aaKnown RBP6.82□□□□□ -1.32
HMGB3-202ENST00000419110 ARID2Q68CP9 1835 aa6.81□□□□□ -1.32
HMGB3-202ENST00000419110 USP17L10C9JJH3 530 aa6.81□□□□□ -1.32
HMGB3-202ENST00000419110 SPTLC2O15270 562 aa6.81□□□□□ -1.32
HMGB3-202ENST00000419110 PLA2G6O60733 806 aa6.81□□□□□ -1.32
HMGB3-202ENST00000419110 KINO60870 393 aaKnown RBP6.81□□□□□ -1.32
HMGB3-202ENST00000419110 SLC16A2P36021 539 aa6.81□□□□□ -1.32
HMGB3-202ENST00000419110 HIRAP54198 1017 aaPredicted RBP6.81□□□□□ -1.32
HMGB3-202ENST00000419110 ORC2Q13416 577 aaPredicted RBP6.81□□□□□ -1.32
HMGB3-202ENST00000419110 NONOQ15233 471 aaKnown RBP eCLIP6.81□□□□□ -1.32
HMGB3-202ENST00000419110 SLC35G1Q2M3R5 365 aa6.81□□□□□ -1.32
HMGB3-202ENST00000419110 QRICH1Q2TAL8 776 aa6.81□□□□□ -1.32
HMGB3-202ENST00000419110 MCTP2Q6DN12 878 aa6.81□□□□□ -1.32
HMGB3-202ENST00000419110 BTNL9Q6UXG8 535 aa6.81□□□□□ -1.32
HMGB3-202ENST00000419110 PIK3AP1Q6ZUJ8 805 aa6.81□□□□□ -1.32
HMGB3-202ENST00000419110 FBXO11Q86XK2 927 aa6.81□□□□□ -1.32
HMGB3-202ENST00000419110 SPICE1Q8N0Z3 855 aa6.81□□□□□ -1.32
HMGB3-202ENST00000419110 FSIP1Q8NA03 581 aa6.81□□□□□ -1.32
HMGB3-202ENST00000419110 DDX55Q8NHQ9 600 aaKnown RBP eCLIP6.81□□□□□ -1.32
HMGB3-202ENST00000419110 ACER1Q8TDN7 264 aa6.81□□□□□ -1.32
HMGB3-202ENST00000419110 MTMR8Q96EF0 704 aa6.81□□□□□ -1.32
HMGB3-202ENST00000419110 CDCA5Q96FF9 252 aa6.81□□□□□ -1.32
HMGB3-202ENST00000419110 SLF1Q9BQI6 1058 aa6.81□□□□□ -1.32
HMGB3-202ENST00000419110 WDR18Q9BV38 432 aa6.81□□□□□ -1.32
HMGB3-202ENST00000419110 AMNQ9BXJ7 453 aa6.81□□□□□ -1.32
HMGB3-202ENST00000419110 UBA5Q9GZZ9 404 aa6.81□□□□□ -1.32
HMGB3-202ENST00000419110 ZMYND12Q9H0C1 365 aa6.81□□□□□ -1.32
HMGB3-202ENST00000419110 TAF1DQ9H5J8 278 aaPredicted RBP6.81□□□□□ -1.32
HMGB3-202ENST00000419110 EHMT1Q9H9B1 1298 aa6.81□□□□□ -1.32
HMGB3-202ENST00000419110 JMJD4Q9H9V9 463 aa6.81□□□□□ -1.32
HMGB3-202ENST00000419110 VAT1LQ9HCJ6 419 aa6.81□□□□□ -1.32
HMGB3-202ENST00000419110 TMOD4Q9NZQ9 345 aa6.81□□□□□ -1.32
HMGB3-202ENST00000419110 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.81□□□□□ -1.32
HMGB3-202ENST00000419110 ZNF112Q9UJU3 913 aa6.81□□□□□ -1.32
HMGB3-202ENST00000419110 FEM1BQ9UK73 627 aa6.81□□□□□ -1.32
HMGB3-202ENST00000419110 CTDP1Q9Y5B0 961 aaPredicted RBP6.81□□□□□ -1.32
HMGB3-202ENST00000419110 ZNF236Q9UL36 1845 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 ABCB11O95342 1321 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 A0A1W2PQ27 194 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 A0A1W2PQ64 194 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 A0A1W2PQD8 194 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 A0A1W2PRG0 241 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 SMCO2A6NFE2 343 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 HRO43593 1189 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 PPP6R2O75170 966 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 GADD45BO75293 160 aaPredicted RBP6.8□□□□□ -1.32
HMGB3-202ENST00000419110 VCAM1P19320 739 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 JAG1P78504 1218 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 AP3B2Q13367 1082 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 VGLL4Q14135 290 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 NPY5RQ15761 445 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 USH1GQ495M9 461 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 TPRNQ4KMQ1 711 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 TTBK2Q6IQ55 1244 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 TYW1BQ6NUM6 668 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 ARMC9Q7Z3E5 817 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 CCDC84Q86UT8 332 aaPredicted RBP6.8□□□□□ -1.32
HMGB3-202ENST00000419110 KRI1Q8N9T8 703 aaKnown RBP6.8□□□□□ -1.32
HMGB3-202ENST00000419110 LINC00301Q8NCQ3 95 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 ZNF280CQ8ND82 737 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 RBM46Q8TBY0 533 aaKnown RBP6.8□□□□□ -1.32
HMGB3-202ENST00000419110 GPT2Q8TD30 523 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 TNFRSF25Q93038 417 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 KIFC2Q96AC6 838 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 SHISA4Q96DD7 197 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 KLRG1Q96E93 195 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 C12orf42Q96LP6 360 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 NAP1L4Q99733 375 aaKnown RBP6.8□□□□□ -1.32
HMGB3-202ENST00000419110 GZF1Q9H116 711 aaPredicted RBP6.8□□□□□ -1.32
HMGB3-202ENST00000419110 NUP62CLQ9H1M0 184 aa6.8□□□□□ -1.32
HMGB3-202ENST00000419110 RANBP17Q9H2T7 1088 aaKnown RBP6.8□□□□□ -1.32
HMGB3-202ENST00000419110 RIC8AQ9NPQ8 531 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms