RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 ANKRD31Q8N7Z5 1873 aa9.46□□□□□ -0.9
USP54-203ENST00000418501 SNED1Q8TER0 1413 aa9.46□□□□□ -0.9
USP54-203ENST00000418501 PSMA7O14818 248 aa9.46□□□□□ -0.9
USP54-203ENST00000418501 GRIN3BO60391 1043 aa9.46□□□□□ -0.9
USP54-203ENST00000418501 DTNBO60941 627 aa9.46□□□□□ -0.9
USP54-203ENST00000418501 PDIA5Q14554 519 aa9.46□□□□□ -0.9
USP54-203ENST00000418501 DNTTIP2Q5QJE6 756 aaKnown RBP9.46□□□□□ -0.9
USP54-203ENST00000418501 FTOQ9C0B1 505 aaKnown RBP eCLIP9.46□□□□□ -0.9
USP54-203ENST00000418501 CCSER1Q9C0I3 900 aa9.46□□□□□ -0.9
USP54-203ENST00000418501 ZMYND15Q9H091 742 aa9.46□□□□□ -0.9
USP54-203ENST00000418501 DDX25Q9UHL0 483 aaKnown RBP9.46□□□□□ -0.9
USP54-203ENST00000418501 HPSEQ9Y251 543 aa9.46□□□□□ -0.9
USP54-203ENST00000418501 CDC25BP30305 580 aa9.45□□□□□ -0.9
USP54-203ENST00000418501 QRICH1Q2TAL8 776 aa9.45□□□□□ -0.9
USP54-203ENST00000418501 PPP4R3AQ6IN85 833 aa9.45□□□□□ -0.9
USP54-203ENST00000418501 BTNL9Q6UXG8 535 aa9.45□□□□□ -0.9
USP54-203ENST00000418501 RBM46Q8TBY0 533 aaKnown RBP9.45□□□□□ -0.9
USP54-203ENST00000418501 UPF1Q92900 1129 aaKnown RBP eCLIP9.45□□□□□ -0.9
USP54-203ENST00000418501 SERTAD1Q9UHV2 236 aa9.45□□□□□ -0.9
USP54-203ENST00000418501 ZBTB12Q9Y330 459 aaPredicted RBP9.45□□□□□ -0.9
USP54-203ENST00000418501 DKC1O60832 514 aaKnown RBP eCLIP9.45□□□□□ -0.9
USP54-203ENST00000418501 IREB2P48200 963 aaKnown RBP9.45□□□□□ -0.9
USP54-203ENST00000418501 CNNM4Q6P4Q7 775 aa9.45□□□□□ -0.9
USP54-203ENST00000418501 PRPF38AQ8NAV1 312 aaKnown RBP9.45□□□□□ -0.9
USP54-203ENST00000418501 CCDC150Q8NCX0 1101 aa9.45□□□□□ -0.9
USP54-203ENST00000418501 GOLPH3LQ9H4A5 285 aa9.45□□□□□ -0.9
USP54-203ENST00000418501 KCNQ5Q9NR82 932 aa9.45□□□□□ -0.9
USP54-203ENST00000418501 ESPNB1AK53 854 aa9.45□□□□□ -0.9
USP54-203ENST00000418501 USP17L10C9JJH3 530 aa9.45□□□□□ -0.9
USP54-203ENST00000418501 WNT10BO00744 389 aa9.45□□□□□ -0.9
USP54-203ENST00000418501 SHC4Q6S5L8 630 aa9.45□□□□□ -0.9
USP54-203ENST00000418501 SLF1Q9BQI6 1058 aa9.45□□□□□ -0.9
USP54-203ENST00000418501 TANGO6Q9C0B7 1094 aa9.45□□□□□ -0.9
USP54-203ENST00000418501 IMPACTQ9P2X3 320 aa9.45□□□□□ -0.9
USP54-203ENST00000418501 IQCA1LA6NCM1 817 aa9.45□□□□□ -0.9
USP54-203ENST00000418501 KCNA3P22001 575 aa9.45□□□□□ -0.9
USP54-203ENST00000418501 SNW1Q13573 536 aaKnown RBP9.45□□□□□ -0.9
USP54-203ENST00000418501 HSP90AA2PQ14568 343 aaPredicted RBP9.45□□□□□ -0.9
USP54-203ENST00000418501 TKFCQ3LXA3 575 aa9.45□□□□□ -0.9
USP54-203ENST00000418501 SAMD1Q6SPF0 538 aaPredicted RBP9.45□□□□□ -0.9
USP54-203ENST00000418501 FAM20AQ96MK3 541 aa9.45□□□□□ -0.9
USP54-203ENST00000418501 CLIC6Q96NY7 704 aa9.45□□□□□ -0.9
USP54-203ENST00000418501 ANO3Q9BYT9 981 aa9.45□□□□□ -0.9
USP54-203ENST00000418501 COPB2P35606 906 aa9.44□□□□□ -0.9
USP54-203ENST00000418501 SETQ01105 290 aaPredicted RBP9.44□□□□□ -0.9
USP54-203ENST00000418501 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.44□□□□□ -0.9
USP54-203ENST00000418501 AOPEPQ8N6M6 819 aa9.44□□□□□ -0.9
USP54-203ENST00000418501 KIFC2Q96AC6 838 aa9.44□□□□□ -0.9
USP54-203ENST00000418501 MRFAP1L1Q96HT8 127 aa9.44□□□□□ -0.9
USP54-203ENST00000418501 COL4A1P02462 1669 aa9.44□□□□□ -0.9
USP54-203ENST00000418501 FZD9O00144 591 aa9.44□□□□□ -0.9
USP54-203ENST00000418501 AFMP43652 599 aa9.44□□□□□ -0.9
USP54-203ENST00000418501 SARM1Q6SZW1 724 aa9.44□□□□□ -0.9
USP54-203ENST00000418501 COA7Q96BR5 231 aa9.44□□□□□ -0.9
USP54-203ENST00000418501 ADARB2Q9NS39 739 aaKnown RBP9.44□□□□□ -0.9
USP54-203ENST00000418501 TUBE1Q9UJT0 475 aa9.44□□□□□ -0.9
USP54-203ENST00000418501 PCDHA12Q9UN75 941 aa9.44□□□□□ -0.9
USP54-203ENST00000418501 PITPNM2Q9BZ72 1349 aa9.44□□□□□ -0.9
USP54-203ENST00000418501 PSDA5PKW4 1024 aaPredicted RBP9.44□□□□□ -0.9
USP54-203ENST00000418501 BIN1O00499 593 aa9.44□□□□□ -0.9
USP54-203ENST00000418501 SLC16A2P36021 539 aa9.43□□□□□ -0.9
USP54-203ENST00000418501 TXKP42681 527 aa9.43□□□□□ -0.9
USP54-203ENST00000418501 TOB1P50616 345 aaPredicted RBP9.43□□□□□ -0.9
USP54-203ENST00000418501 TTLL12Q14166 644 aaPredicted RBP9.43□□□□□ -0.9
USP54-203ENST00000418501 TBC1D10BQ4KMP7 808 aaPredicted RBP9.43□□□□□ -0.9
USP54-203ENST00000418501 CCDC65Q8IXS2 484 aa9.43□□□□□ -0.9
USP54-203ENST00000418501 PANK2Q9BZ23 570 aa9.43□□□□□ -0.9
USP54-203ENST00000418501 KIAA1683Q9H0B3 1180 aa9.43□□□□□ -0.9
USP54-203ENST00000418501 SCYL3Q8IZE3 742 aa9.43□□□□□ -0.9
USP54-203ENST00000418501 CCDC112Q8NEF3 446 aa9.43□□□□□ -0.9
USP54-203ENST00000418501 TNFRSF25Q93038 417 aa9.43□□□□□ -0.9
USP54-203ENST00000418501 WDR11Q9BZH6 1224 aa9.43□□□□□ -0.9
USP54-203ENST00000418501 DEFB129Q9H1M3 183 aa9.43□□□□□ -0.9
USP54-203ENST00000418501 DISC1Q9NRI5 854 aa9.43□□□□□ -0.9
USP54-203ENST00000418501 CCPG1Q9ULG6 757 aa9.43□□□□□ -0.9
USP54-203ENST00000418501 CCT6AP40227 531 aaKnown RBP9.43□□□□□ -0.9
USP54-203ENST00000418501 PPFIBP1Q86W92 1011 aa9.43□□□□□ -0.9
USP54-203ENST00000418501 SNX29Q8TEQ0 813 aa9.43□□□□□ -0.9
USP54-203ENST00000418501 IQCDQ96DY2 449 aa9.43□□□□□ -0.9
USP54-203ENST00000418501 HACL1Q9UJ83 578 aa9.43□□□□□ -0.9
USP54-203ENST00000418501 BAZ2AQ9UIF9 1905 aaKnown RBP9.43□□□□□ -0.9
USP54-203ENST00000418501 ZC3H4Q9UPT8 1303 aaKnown RBP9.43□□□□□ -0.9
USP54-203ENST00000418501 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.42□□□□□ -0.9
USP54-203ENST00000418501 FXR2P51116 673 aaKnown RBP eCLIP9.42□□□□□ -0.9
USP54-203ENST00000418501 ASIC1P78348 528 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 XRRA1Q6P2D8 792 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 FUCA2Q9BTY2 467 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 HOXC10Q9NYD6 342 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 RNF181Q9P0P0 153 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 SLX4Q8IY92 1834 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 CASZ1Q86V15 1759 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 COL11A2P13942 1736 aaPredicted RBP9.42□□□□□ -0.9
USP54-203ENST00000418501 ZNF75DP51815 510 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 PSMD2Q13200 908 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 USH1GQ495M9 461 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 FAM83BQ5T0W9 1011 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 ARMC9Q7Z3E5 817 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 LUZP1Q86V48 1076 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 TMEM39BQ9GZU3 492 aa9.42□□□□□ -0.9
USP54-203ENST00000418501 KCNG1Q9UIX4 513 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms