RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 SYNE3Q6ZMZ3 975 aa14.51□□□□□ -0.09
SKA1-203ENST00000417656 HOMER1Q86YM7 354 aa14.51□□□□□ -0.09
SKA1-203ENST00000417656 ABRAQ8N0Z2 381 aa14.51□□□□□ -0.09
SKA1-203ENST00000417656 PXYLP1Q8TE99 480 aa14.51□□□□□ -0.09
SKA1-203ENST00000417656 ZNF333Q96JL9 665 aa14.51□□□□□ -0.09
SKA1-203ENST00000417656 TRERF1Q96PN7 1200 aa14.51□□□□□ -0.09
SKA1-203ENST00000417656 FBXO40Q9UH90 709 aa14.51□□□□□ -0.09
SKA1-203ENST00000417656 BAZ2BQ9UIF8 2168 aaKnown RBP14.5□□□□□ -0.09
SKA1-203ENST00000417656 LRRC37A2A6NM11 1700 aa14.5□□□□□ -0.09
SKA1-203ENST00000417656 HMGCRP04035 888 aa14.5□□□□□ -0.09
SKA1-203ENST00000417656 HOXC6P09630 235 aa14.5□□□□□ -0.09
SKA1-203ENST00000417656 XRCC5P13010 732 aaKnown RBP14.5□□□□□ -0.09
SKA1-203ENST00000417656 TRIM32Q13049 653 aa14.5□□□□□ -0.09
SKA1-203ENST00000417656 TOB2Q14106 344 aaPredicted RBP14.5□□□□□ -0.09
SKA1-203ENST00000417656 RTN1Q16799 776 aa14.5□□□□□ -0.09
SKA1-203ENST00000417656 TMTC3Q6ZXV5 915 aa14.5□□□□□ -0.09
SKA1-203ENST00000417656 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.5□□□□□ -0.09
SKA1-203ENST00000417656 DPP9Q86TI2 863 aa14.5□□□□□ -0.09
SKA1-203ENST00000417656 CMTR1Q8N1G2 835 aaKnown RBP14.5□□□□□ -0.09
SKA1-203ENST00000417656 FANCBQ8NB91 859 aa14.5□□□□□ -0.09
SKA1-203ENST00000417656 PIBF1Q8WXW3 757 aa14.5□□□□□ -0.09
SKA1-203ENST00000417656 MTMR8Q96EF0 704 aa14.5□□□□□ -0.09
SKA1-203ENST00000417656 IL17RAQ96F46 866 aa14.5□□□□□ -0.09
SKA1-203ENST00000417656 PIGSQ96S52 555 aa14.5□□□□□ -0.09
SKA1-203ENST00000417656 AGXT2Q9BYV1 514 aa14.5□□□□□ -0.09
SKA1-203ENST00000417656 RIOX1Q9H6W3 641 aa14.5□□□□□ -0.09
SKA1-203ENST00000417656 A1CFQ9NQ94 594 aaKnown RBP14.5□□□□□ -0.09
SKA1-203ENST00000417656 FLRT1Q9NZU1 646 aa14.5□□□□□ -0.09
SKA1-203ENST00000417656 BIN2Q9UBW5 565 aaPredicted RBP14.5□□□□□ -0.09
SKA1-203ENST00000417656 NID2Q14112 1375 aa14.49□□□□□ -0.09
SKA1-203ENST00000417656 CCDC85CA6NKD9 419 aa14.49□□□□□ -0.09
SKA1-203ENST00000417656 NFIBO00712 420 aa14.49□□□□□ -0.09
SKA1-203ENST00000417656 ZBTB5O15062 677 aa14.49□□□□□ -0.09
SKA1-203ENST00000417656 PPP1R11O60927 126 aaPredicted RBP14.49□□□□□ -0.09
SKA1-203ENST00000417656 PRKAR2AP13861 404 aaKnown RBP14.49□□□□□ -0.09
SKA1-203ENST00000417656 GNAQP50148 359 aa14.49□□□□□ -0.09
SKA1-203ENST00000417656 NSMFQ6X4W1 530 aa14.49□□□□□ -0.09
SKA1-203ENST00000417656 FBXO11Q86XK2 927 aa14.49□□□□□ -0.09
SKA1-203ENST00000417656 ANKRD35Q8N283 1001 aa14.49□□□□□ -0.09
SKA1-203ENST00000417656 FBXL16Q8N461 479 aa14.49□□□□□ -0.09
SKA1-203ENST00000417656 SRBD1Q8N5C6 995 aaKnown RBP14.49□□□□□ -0.09
SKA1-203ENST00000417656 CLEC4DQ8WXI8 215 aa14.49□□□□□ -0.09
SKA1-203ENST00000417656 SPZ1Q9BXG8 430 aa14.49□□□□□ -0.09
SKA1-203ENST00000417656 PDRG1Q9NUG6 133 aa14.49□□□□□ -0.09
SKA1-203ENST00000417656 PNMA2Q9UL42 364 aa14.49□□□□□ -0.09
SKA1-203ENST00000417656 ABCB11O95342 1321 aa14.48□□□□□ -0.09
SKA1-203ENST00000417656 CNTNAP5Q8WYK1 1306 aa14.48□□□□□ -0.09
SKA1-203ENST00000417656 DNAJC25-GNG10A0A024R161 153 aa14.48□□□□□ -0.09
SKA1-203ENST00000417656 METAP2P50579 478 aaKnown RBP eCLIP14.48□□□□□ -0.09
SKA1-203ENST00000417656 RCAN1P53805 252 aa14.48□□□□□ -0.09
SKA1-203ENST00000417656 UBXN2AP68543 259 aa14.48□□□□□ -0.09
SKA1-203ENST00000417656 MTFR1Q15390 333 aa14.48□□□□□ -0.09
SKA1-203ENST00000417656 ZNF792Q3KQV3 632 aa14.48□□□□□ -0.09
SKA1-203ENST00000417656 DDX11Q96FC9 970 aa14.48□□□□□ -0.09
SKA1-203ENST00000417656 MAML3Q96JK9 1138 aa14.48□□□□□ -0.09
SKA1-203ENST00000417656 LZTS2Q9BRK4 669 aa14.48□□□□□ -0.09
SKA1-203ENST00000417656 LARP6Q9BRS8 491 aaKnown RBP14.48□□□□□ -0.09
SKA1-203ENST00000417656 RBM28Q9NW13 759 aaKnown RBP14.48□□□□□ -0.09
SKA1-203ENST00000417656 PFASO15067 1338 aa14.47□□□□□ -0.09
SKA1-203ENST00000417656 CDC27P30260 824 aa14.47□□□□□ -0.09
SKA1-203ENST00000417656 SLC30A10Q6XR72 485 aa14.47□□□□□ -0.09
SKA1-203ENST00000417656 TRMT44Q8IYL2 757 aaKnown RBP14.47□□□□□ -0.09
SKA1-203ENST00000417656 CCDC82Q8N4S0 544 aa14.47□□□□□ -0.09
SKA1-203ENST00000417656 RRP36Q96EU6 259 aaKnown RBP14.47□□□□□ -0.09
SKA1-203ENST00000417656 FGD4Q96M96 766 aa14.47□□□□□ -0.09
SKA1-203ENST00000417656 AMNQ9BXJ7 453 aa14.47□□□□□ -0.09
SKA1-203ENST00000417656 C22orf23Q9BZE7 217 aa14.47□□□□□ -0.09
SKA1-203ENST00000417656 SLC5A4Q9NY91 659 aa14.47□□□□□ -0.09
SKA1-203ENST00000417656 CENPFP49454 3210 aa14.47□□□□□ -0.09
SKA1-203ENST00000417656 FRMPD3Q5JV73 1810 aa14.47□□□□□ -0.09
SKA1-203ENST00000417656 MCM3APO60318 1980 aa14.47□□□□□ -0.09
SKA1-203ENST00000417656 hCG_1642624A0A1W2PR95 340 aa14.46□□□□□ -0.09
SKA1-203ENST00000417656 PTPDC1A2A3K4 754 aa14.46□□□□□ -0.09
SKA1-203ENST00000417656 CCL5P13501 91 aa14.46□□□□□ -0.09
SKA1-203ENST00000417656 CYP2C19P33261 490 aa14.46□□□□□ -0.09
SKA1-203ENST00000417656 SOX10P56693 466 aa14.46□□□□□ -0.09
SKA1-203ENST00000417656 MAP3K21Q5TCX8 1036 aa14.46□□□□□ -0.09
SKA1-203ENST00000417656 OLFML2BQ68BL8 750 aa14.46□□□□□ -0.09
SKA1-203ENST00000417656 UNC93B1Q9H1C4 597 aa14.46□□□□□ -0.09
SKA1-203ENST00000417656 FAM217BQ9NTX9 383 aaPredicted RBP14.46□□□□□ -0.09
SKA1-203ENST00000417656 CYP39A1Q9NYL5 469 aa14.46□□□□□ -0.09
SKA1-203ENST00000417656 SEC63Q9UGP8 760 aaKnown RBP14.46□□□□□ -0.09
SKA1-203ENST00000417656 PNMA6FA0A0J9YX94 578 aa14.45□□□□□ -0.1
SKA1-203ENST00000417656 POTEB2H3BUK9 544 aa14.45□□□□□ -0.1
SKA1-203ENST00000417656 IGHA2P01877 340 aa14.45□□□□□ -0.1
SKA1-203ENST00000417656 CALML3P27482 149 aa14.45□□□□□ -0.1
SKA1-203ENST00000417656 SMARCA1P28370 1054 aa14.45□□□□□ -0.1
SKA1-203ENST00000417656 PDIA3P30101 505 aaKnown RBP14.45□□□□□ -0.1
SKA1-203ENST00000417656 RBM25P49756 843 aaKnown RBP14.45□□□□□ -0.1
SKA1-203ENST00000417656 AK2P54819 239 aa14.45□□□□□ -0.1
SKA1-203ENST00000417656 EVCP57679 992 aa14.45□□□□□ -0.1
SKA1-203ENST00000417656 CNTN2Q02246 1040 aa14.45□□□□□ -0.1
SKA1-203ENST00000417656 CACNB2Q08289 660 aaPredicted RBP14.45□□□□□ -0.1
SKA1-203ENST00000417656 FUT2Q10981 343 aa14.45□□□□□ -0.1
SKA1-203ENST00000417656 BAATQ14032 418 aaPredicted RBP14.45□□□□□ -0.1
SKA1-203ENST00000417656 MFSD14CQ5VZR4 134 aa14.45□□□□□ -0.1
SKA1-203ENST00000417656 RNF207Q6ZRF8 634 aa14.45□□□□□ -0.1
SKA1-203ENST00000417656 NOL8Q76FK4 1167 aaKnown RBP14.45□□□□□ -0.1
SKA1-203ENST00000417656 FAM133AQ8N9E0 248 aa14.45□□□□□ -0.1
SKA1-203ENST00000417656 PURBQ96QR8 312 aaKnown RBP14.45□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms