RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 SMPD1P17405 629 aa15.35■□□□□ 0.05
LINC00339-202ENST00000416769 MCCP23508 829 aa15.35■□□□□ 0.05
LINC00339-202ENST00000416769 CCDC85BQ15834 202 aaPredicted RBP15.35■□□□□ 0.05
LINC00339-202ENST00000416769 GIMAP6Q6P9H5 292 aa15.35■□□□□ 0.05
LINC00339-202ENST00000416769 CCDC174Q6PII3 467 aa15.35■□□□□ 0.05
LINC00339-202ENST00000416769 KCTD1Q719H9 257 aa15.35■□□□□ 0.05
LINC00339-202ENST00000416769 NOL8Q76FK4 1167 aaKnown RBP15.35■□□□□ 0.05
LINC00339-202ENST00000416769 FBXO16Q8IX29 292 aaPredicted RBP15.35■□□□□ 0.05
LINC00339-202ENST00000416769 ZNF444Q8N0Y2 327 aaPredicted RBP15.35■□□□□ 0.05
LINC00339-202ENST00000416769 GMCL1P1Q8NEA9 526 aa15.35■□□□□ 0.05
LINC00339-202ENST00000416769 CHST13Q8NET6 341 aa15.35■□□□□ 0.05
LINC00339-202ENST00000416769 NEDD1Q8NHV4 660 aa15.35■□□□□ 0.05
LINC00339-202ENST00000416769 TRPV6Q9H1D0 765 aa15.35■□□□□ 0.05
LINC00339-202ENST00000416769 NKX2-4Q9H2Z4 354 aa15.35■□□□□ 0.05
LINC00339-202ENST00000416769 MTMR7Q9Y216 660 aa15.35■□□□□ 0.05
LINC00339-202ENST00000416769 GNEQ9Y223 722 aaKnown RBP15.35■□□□□ 0.05
LINC00339-202ENST00000416769 CTDP1Q9Y5B0 961 aaPredicted RBP15.35■□□□□ 0.05
LINC00339-202ENST00000416769 PLIN4Q96Q06 1357 aa15.35■□□□□ 0.05
LINC00339-202ENST00000416769 MYOGP15173 224 aa15.34■□□□□ 0.05
LINC00339-202ENST00000416769 RABGGTBP53611 331 aa15.34■□□□□ 0.05
LINC00339-202ENST00000416769 CCL23P55773 120 aa15.34■□□□□ 0.05
LINC00339-202ENST00000416769 TFAP4Q01664 338 aa15.34■□□□□ 0.05
LINC00339-202ENST00000416769 CTDSPL2Q05D32 466 aa15.34■□□□□ 0.05
LINC00339-202ENST00000416769 PPIGQ13427 754 aaKnown RBP eCLIP15.34■□□□□ 0.05
LINC00339-202ENST00000416769 TLK2Q86UE8 772 aa15.34■□□□□ 0.05
LINC00339-202ENST00000416769 PCSK9Q8NBP7 692 aaKnown RBP15.34■□□□□ 0.05
LINC00339-202ENST00000416769 WNT8AQ9H1J5 351 aa15.34■□□□□ 0.05
LINC00339-202ENST00000416769 RWDD1Q9H446 243 aaPredicted RBP15.34■□□□□ 0.05
LINC00339-202ENST00000416769 ACAD9Q9H845 621 aa15.34■□□□□ 0.05
LINC00339-202ENST00000416769 SCN5AQ14524 2016 aa15.33■□□□□ 0.04
LINC00339-202ENST00000416769 TSPY3P0CV98 308 aa15.33■□□□□ 0.04
LINC00339-202ENST00000416769 TSPY8P0CW00 308 aa15.33■□□□□ 0.04
LINC00339-202ENST00000416769 ALAS1P13196 640 aa15.33■□□□□ 0.04
LINC00339-202ENST00000416769 TNFAIP2Q03169 654 aa15.33■□□□□ 0.04
LINC00339-202ENST00000416769 PPARAQ07869 468 aa15.33■□□□□ 0.04
LINC00339-202ENST00000416769 HDAC1Q13547 482 aaPredicted RBP15.33■□□□□ 0.04
LINC00339-202ENST00000416769 OTOP2Q7RTS6 562 aa15.33■□□□□ 0.04
LINC00339-202ENST00000416769 PI4K2BQ8TCG2 481 aa15.33■□□□□ 0.04
LINC00339-202ENST00000416769 DCTPP1Q9H773 170 aa15.33■□□□□ 0.04
LINC00339-202ENST00000416769 IL17RBQ9NRM6 502 aa15.33■□□□□ 0.04
LINC00339-202ENST00000416769 PPP4R2Q9NY27 417 aa15.33■□□□□ 0.04
LINC00339-202ENST00000416769 REV3LO60673 3130 aa15.33■□□□□ 0.04
LINC00339-202ENST00000416769 TCF20Q9UGU0 1960 aaKnown RBP15.33■□□□□ 0.04
LINC00339-202ENST00000416769 PATL2C9JE40 543 aaKnown RBP15.32■□□□□ 0.04
LINC00339-202ENST00000416769 DYNC1LI2O43237 492 aaPredicted RBP15.32■□□□□ 0.04
LINC00339-202ENST00000416769 B4GALT4O60513 344 aa15.32■□□□□ 0.04
LINC00339-202ENST00000416769 OAZ1P54368 228 aa15.32■□□□□ 0.04
LINC00339-202ENST00000416769 TJAP1Q5JTD0 557 aa15.32■□□□□ 0.04
LINC00339-202ENST00000416769 TTBK2Q6IQ55 1244 aa15.32■□□□□ 0.04
LINC00339-202ENST00000416769 TAPT1Q6NXT6 567 aa15.32■□□□□ 0.04
LINC00339-202ENST00000416769 TMEM199Q8N511 208 aa15.32■□□□□ 0.04
LINC00339-202ENST00000416769 SLC43A3Q8NBI5 491 aa15.32■□□□□ 0.04
LINC00339-202ENST00000416769 SCLYQ96I15 445 aa15.32■□□□□ 0.04
LINC00339-202ENST00000416769 TRERF1Q96PN7 1200 aa15.32■□□□□ 0.04
LINC00339-202ENST00000416769 HIPK3Q9H422 1215 aa15.32■□□□□ 0.04
LINC00339-202ENST00000416769 IL23AQ9NPF7 189 aa15.32■□□□□ 0.04
LINC00339-202ENST00000416769 FBXO40Q9UH90 709 aa15.32■□□□□ 0.04
LINC00339-202ENST00000416769 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.32■□□□□ 0.04
LINC00339-202ENST00000416769 MROH7Q68CQ1 1323 aa15.32■□□□□ 0.04
LINC00339-202ENST00000416769 PRRC2BQ5JSZ5 2229 aaKnown RBP15.31■□□□□ 0.04
LINC00339-202ENST00000416769 SLC1A4P43007 532 aa15.31■□□□□ 0.04
LINC00339-202ENST00000416769 STAT2P52630 851 aa15.31■□□□□ 0.04
LINC00339-202ENST00000416769 NKX3-2P78367 333 aa15.31■□□□□ 0.04
LINC00339-202ENST00000416769 IKQ13123 557 aaPredicted RBP15.31■□□□□ 0.04
LINC00339-202ENST00000416769 ITGA7Q13683 1181 aa15.31■□□□□ 0.04
LINC00339-202ENST00000416769 FSCN1Q16658 493 aaKnown RBP15.31■□□□□ 0.04
LINC00339-202ENST00000416769 VPS53Q5VIR6 699 aa15.31■□□□□ 0.04
LINC00339-202ENST00000416769 STAG1Q8WVM7 1258 aa15.31■□□□□ 0.04
LINC00339-202ENST00000416769 HERVK_113Q902F9 699 aa15.31■□□□□ 0.04
LINC00339-202ENST00000416769 NECAB3Q96P71 396 aaPredicted RBP15.31■□□□□ 0.04
LINC00339-202ENST00000416769 NOC4LQ9BVI4 516 aaKnown RBP15.31■□□□□ 0.04
LINC00339-202ENST00000416769 SPC25Q9HBM1 224 aa15.31■□□□□ 0.04
LINC00339-202ENST00000416769 PRR12Q9ULL5 1215 aa15.31■□□□□ 0.04
LINC00339-202ENST00000416769 IGHDP01880 384 aa15.3■□□□□ 0.04
LINC00339-202ENST00000416769 GNAT2P19087 354 aa15.3■□□□□ 0.04
LINC00339-202ENST00000416769 IGFBP4P22692 258 aa15.3■□□□□ 0.04
LINC00339-202ENST00000416769 SLC16A2P36021 539 aa15.3■□□□□ 0.04
LINC00339-202ENST00000416769 ZMYM1Q5SVZ6 1142 aa15.3■□□□□ 0.04
LINC00339-202ENST00000416769 PSRC1Q6PGN9 363 aaPredicted RBP15.3■□□□□ 0.04
LINC00339-202ENST00000416769 NSMFQ6X4W1 530 aa15.3■□□□□ 0.04
LINC00339-202ENST00000416769 GMCL1Q96IK5 515 aa15.3■□□□□ 0.04
LINC00339-202ENST00000416769 NAPBQ9H115 298 aa15.3■□□□□ 0.04
LINC00339-202ENST00000416769 TRMT13Q9NUP7 481 aaKnown RBP15.3■□□□□ 0.04
LINC00339-202ENST00000416769 CYP39A1Q9NYL5 469 aa15.3■□□□□ 0.04
LINC00339-202ENST00000416769 STX8Q9UNK0 236 aa15.3■□□□□ 0.04
LINC00339-202ENST00000416769 RFXAPO00287 272 aa15.29■□□□□ 0.04
LINC00339-202ENST00000416769 NFIBO00712 420 aa15.29■□□□□ 0.04
LINC00339-202ENST00000416769 TLR3O15455 904 aaKnown RBP15.29■□□□□ 0.04
LINC00339-202ENST00000416769 ZFYP08048 801 aaPredicted RBP15.29■□□□□ 0.04
LINC00339-202ENST00000416769 CYP2C9P11712 490 aa15.29■□□□□ 0.04
LINC00339-202ENST00000416769 GAS2L1Q99501 681 aaPredicted RBP15.29■□□□□ 0.04
LINC00339-202ENST00000416769 FSD1Q9BTV5 496 aa15.29■□□□□ 0.04
LINC00339-202ENST00000416769 TET1Q8NFU7 2136 aa15.29■□□□□ 0.04
LINC00339-202ENST00000416769 FRMPD2Q68DX3 1309 aaPredicted RBP15.28■□□□□ 0.04
LINC00339-202ENST00000416769 TNFRSF10AO00220 468 aa15.28■□□□□ 0.04
LINC00339-202ENST00000416769 ARHGEF15O94989 841 aa15.28■□□□□ 0.04
LINC00339-202ENST00000416769 FGBP02675 491 aa15.28■□□□□ 0.04
LINC00339-202ENST00000416769 TTLL4Q14679 1199 aa15.28■□□□□ 0.04
LINC00339-202ENST00000416769 SLC30A10Q6XR72 485 aa15.28■□□□□ 0.04
LINC00339-202ENST00000416769 GPATCH3Q96I76 525 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms