RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 DNMT3LQ9UJW3 386 aa3.24□□□□□ -1.89
MCF2-204ENST00000414978 ZNF180Q9UJW8 692 aa3.24□□□□□ -1.89
MCF2-204ENST00000414978 RPGRIP1LQ68CZ1 1315 aa3.24□□□□□ -1.89
MCF2-204ENST00000414978 ROCK1Q13464 1354 aa3.24□□□□□ -1.89
MCF2-204ENST00000414978 TNS2Q63HR2 1409 aa3.24□□□□□ -1.89
MCF2-204ENST00000414978 SLIT3O75094 1523 aa3.24□□□□□ -1.89
MCF2-204ENST00000414978 K7ESF4 209 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 PLSCR1O15162 318 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 MYBL2P10244 700 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 RLBP1P12271 317 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 KCNJ6P48051 423 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 NEK3P51956 506 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 GPBAR1Q8TDU6 330 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 NXPE3Q969Y0 559 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 HOOK2Q96ED9 719 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 FBXO9Q9UK97 447 aaPredicted RBP3.23□□□□□ -1.89
MCF2-204ENST00000414978 PPM1HQ9ULR3 514 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 LOC102724428A0A0B4J2F2 783 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 PLIN1O60240 522 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 RFPL1O75677 317 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 C5P01031 1676 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 EPHA1P21709 976 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 PMLP29590 882 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 SIK1P57059 783 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 PPP2R2AP63151 447 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 IKBKEQ14164 716 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 MPP2Q14168 576 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 SV2BQ7L1I2 683 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 ZBTB46Q86UZ6 589 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 CMIPQ8IY22 773 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 FAM9BQ8IZU0 186 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 PAF1Q8N7H5 531 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 GPR101Q96P66 508 aaPredicted RBP3.23□□□□□ -1.89
MCF2-204ENST00000414978 VTA1Q9NP79 307 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 DDX21Q9NR30 783 aaKnown RBP eCLIP3.23□□□□□ -1.89
MCF2-204ENST00000414978 PKD2L1Q9P0L9 805 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 ADAMTS7Q9UKP4 1686 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 ATP10DQ9P241 1426 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 BNIP3LO60238 219 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 SUSD5O60279 629 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 PGRP06401 933 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 SMPD1P17405 629 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 IARSP41252 1262 aaKnown RBP3.23□□□□□ -1.89
MCF2-204ENST00000414978 RPIAP49247 311 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 DPY19L1Q2PZI1 675 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 PPM1JQ5JR12 505 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 B3GNT9Q6UX72 402 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 CHPFQ8IZ52 775 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 ZSWIM2Q8NEG5 633 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 NGDNQ8NEJ9 315 aaKnown RBP3.23□□□□□ -1.89
MCF2-204ENST00000414978 SNIP1Q8TAD8 396 aaKnown RBP3.23□□□□□ -1.89
MCF2-204ENST00000414978 PMEPA1Q969W9 287 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 SPATA9Q9BWV2 254 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 CAAP1Q9H8G2 361 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 TCF7L1Q9HCS4 588 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 GJD2Q9UKL4 321 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 TRHDEQ9UKU6 1024 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 MINPP1Q9UNW1 487 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 PPP2R3BQ9Y5P8 575 aa3.23□□□□□ -1.89
MCF2-204ENST00000414978 OVOS2A0A0G2JMS6 1433 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 OVOS2A0A0J9YW53 1432 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 OVOS2Q6IE36 1432 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 EIF3AQ14152 1382 aaKnown RBP3.22□□□□□ -1.89
MCF2-204ENST00000414978 ROBO2Q9HCK4 1378 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 DICER1Q9UPY3 1922 aaKnown RBP3.22□□□□□ -1.89
MCF2-204ENST00000414978 ZBTB42B2RXF5 422 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 RFPL3O75679 317 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 RASGRP1O95267 797 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 BMP6P22004 513 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 CCND1P24385 295 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 LONRF1Q17RB8 773 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 MRPL14Q6P1L8 145 aaKnown RBP3.22□□□□□ -1.89
MCF2-204ENST00000414978 LRRC3Q9BY71 257 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 MKRN2Q9H000 416 aaKnown RBP3.22□□□□□ -1.89
MCF2-204ENST00000414978 GTF2IRD1Q9UHL9 959 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 MRPS23Q9Y3D9 190 aaKnown RBP3.22□□□□□ -1.89
MCF2-204ENST00000414978 COMMD10Q9Y6G5 202 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 FAM187AA6NFU0 413 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 ZNF891A8MT65 544 aaPredicted RBP3.22□□□□□ -1.89
MCF2-204ENST00000414978 C9IYK1 514 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 PRODHO43272 600 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 CILPO75339 1184 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 RNF144AP50876 292 aaPredicted RBP3.22□□□□□ -1.89
MCF2-204ENST00000414978 ZNF280AP59817 542 aaPredicted RBP3.22□□□□□ -1.89
MCF2-204ENST00000414978 WDR78Q5VTH9 848 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 IQSEC1Q6DN90 963 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 NKAPQ8N5F7 415 aaKnown RBP3.22□□□□□ -1.89
MCF2-204ENST00000414978 DNAJC5GQ8N7S2 189 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 RBBP8NLQ8NC74 664 aaPredicted RBP3.22□□□□□ -1.89
MCF2-204ENST00000414978 SLC6A18Q96N87 628 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 APOL5Q9BWW9 433 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 PBX4Q9BYU1 374 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 NCOA5Q9HCD5 579 aaKnown RBP3.22□□□□□ -1.89
MCF2-204ENST00000414978 DNAJB12Q9NXW2 375 aaKnown RBP3.22□□□□□ -1.89
MCF2-204ENST00000414978 TLR7Q9NYK1 1049 aaKnown RBP3.22□□□□□ -1.89
MCF2-204ENST00000414978 SAP30BPQ9UHR5 308 aaKnown RBP3.22□□□□□ -1.89
MCF2-204ENST00000414978 NAGPAQ9UK23 515 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 TNPO3Q9Y5L0 923 aaKnown RBP3.22□□□□□ -1.89
MCF2-204ENST00000414978 VPS8Q8N3P4 1428 aa3.22□□□□□ -1.89
MCF2-204ENST00000414978 NFKBIEO00221 500 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms