RNA–Protein interactions for RNA: ENST00000414879.5

PTPRF-205, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,836 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-205ENST00000414879 NACC1Q96RE7 527 aa13.24□□□□□ -0.29
PTPRF-205ENST00000414879 NAPGQ99747 312 aaPredicted RBP13.24□□□□□ -0.29
PTPRF-205ENST00000414879 ADPGKQ9BRR6 497 aa13.24□□□□□ -0.29
PTPRF-205ENST00000414879 ARMCX3Q9UH62 379 aaPredicted RBP13.24□□□□□ -0.29
PTPRF-205ENST00000414879 HERC5Q9UII4 1024 aaKnown RBP13.24□□□□□ -0.29
PTPRF-205ENST00000414879 MST1RQ04912 1400 aa13.24□□□□□ -0.29
PTPRF-205ENST00000414879 NFIXQ14938 502 aa13.24□□□□□ -0.29
PTPRF-205ENST00000414879 MAATS1Q7Z4T9 603 aa13.24□□□□□ -0.29
PTPRF-205ENST00000414879 FAM178BQ8IXR5 827 aa13.24□□□□□ -0.29
PTPRF-205ENST00000414879 FAM184BQ9ULE4 1060 aa13.24□□□□□ -0.29
PTPRF-205ENST00000414879 GADD45BO75293 160 aaPredicted RBP13.24□□□□□ -0.29
PTPRF-205ENST00000414879 KRT5P13647 590 aa13.24□□□□□ -0.29
PTPRF-205ENST00000414879 PANK4Q9NVE7 773 aa13.24□□□□□ -0.29
PTPRF-205ENST00000414879 CAMTA2O94983 1202 aa13.24□□□□□ -0.29
PTPRF-205ENST00000414879 RPN1P04843 607 aaKnown RBP13.24□□□□□ -0.29
PTPRF-205ENST00000414879 CALCOCO2Q13137 446 aa13.24□□□□□ -0.29
PTPRF-205ENST00000414879 CDC37Q16543 378 aaPredicted RBP13.24□□□□□ -0.29
PTPRF-205ENST00000414879 ATF7P17544 494 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-205ENST00000414879 EEF1GP26641 437 aaKnown RBP13.23□□□□□ -0.29
PTPRF-205ENST00000414879 RETREG2Q8NC44 543 aa13.23□□□□□ -0.29
PTPRF-205ENST00000414879 OR8K1Q8NGG5 319 aa13.23□□□□□ -0.29
PTPRF-205ENST00000414879 GABPB2Q8TAK5 448 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-205ENST00000414879 SLFN14P0C7P3 912 aa13.23□□□□□ -0.29
PTPRF-205ENST00000414879 CCND2P30279 289 aa13.23□□□□□ -0.29
PTPRF-205ENST00000414879 DMP1Q13316 513 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-205ENST00000414879 XKR9Q5GH70 373 aa13.23□□□□□ -0.29
PTPRF-205ENST00000414879 LRCH2Q5VUJ6 765 aa13.23□□□□□ -0.29
PTPRF-205ENST00000414879 SRPRBQ9Y5M8 271 aaKnown RBP13.23□□□□□ -0.29
PTPRF-205ENST00000414879 hCG_1642624A0A1W2PR95 340 aa13.23□□□□□ -0.29
PTPRF-205ENST00000414879 XPOTO43592 962 aaKnown RBP13.23□□□□□ -0.29
PTPRF-205ENST00000414879 STAMBPO95630 424 aa13.23□□□□□ -0.29
PTPRF-205ENST00000414879 GOLGA8HP0CJ92 632 aa13.23□□□□□ -0.29
PTPRF-205ENST00000414879 TMTC3Q6ZXV5 915 aa13.23□□□□□ -0.29
PTPRF-205ENST00000414879 LARP4BQ92615 738 aaKnown RBP13.23□□□□□ -0.29
PTPRF-205ENST00000414879 GPKOWQ92917 476 aaPredicted RBP eCLIP13.23□□□□□ -0.29
PTPRF-205ENST00000414879 ZNF341Q9BYN7 854 aa13.23□□□□□ -0.29
PTPRF-205ENST00000414879 FEZ2Q9UHY8 353 aaPredicted RBP13.23□□□□□ -0.29
PTPRF-205ENST00000414879 DDX39AO00148 427 aaKnown RBP13.23□□□□□ -0.29
PTPRF-205ENST00000414879 PRKAB2O43741 272 aa13.23□□□□□ -0.29
PTPRF-205ENST00000414879 KLHL30Q0D2K2 578 aa13.23□□□□□ -0.29
PTPRF-205ENST00000414879 TAF12Q16514 161 aa13.23□□□□□ -0.29
PTPRF-205ENST00000414879 FAM182BQ5T319 152 aa13.23□□□□□ -0.29
PTPRF-205ENST00000414879 GBP6Q6ZN66 633 aa13.23□□□□□ -0.29
PTPRF-205ENST00000414879 LINC00301Q8NCQ3 95 aa13.23□□□□□ -0.29
PTPRF-205ENST00000414879 RGS22Q8NE09 1264 aa13.23□□□□□ -0.29
PTPRF-205ENST00000414879 CELF1Q92879 486 aaKnown RBP13.23□□□□□ -0.29
PTPRF-205ENST00000414879 PAGR1Q9BTK6 254 aa13.23□□□□□ -0.29
PTPRF-205ENST00000414879 MAK16Q9BXY0 300 aaKnown RBP13.23□□□□□ -0.29
PTPRF-205ENST00000414879 BZW2Q9Y6E2 419 aaKnown RBP13.23□□□□□ -0.29
PTPRF-205ENST00000414879 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.23□□□□□ -0.29
PTPRF-205ENST00000414879 MON2Q7Z3U7 1717 aa13.22□□□□□ -0.29
PTPRF-205ENST00000414879 MAGEA1P43355 309 aa13.22□□□□□ -0.29
PTPRF-205ENST00000414879 PRKG1Q13976 671 aa13.22□□□□□ -0.29
PTPRF-205ENST00000414879 MORC3Q14149 939 aa13.22□□□□□ -0.29
PTPRF-205ENST00000414879 ZNF579Q8NAF0 562 aaKnown RBP13.22□□□□□ -0.29
PTPRF-205ENST00000414879 SECISBP2LQ93073 1101 aaKnown RBP13.22□□□□□ -0.29
PTPRF-205ENST00000414879 CCDC94Q9BW85 323 aaPredicted RBP13.22□□□□□ -0.29
PTPRF-205ENST00000414879 ACTN4O43707 911 aaKnown RBP13.22□□□□□ -0.29
PTPRF-205ENST00000414879 GSTA5Q7RTV2 222 aa13.22□□□□□ -0.29
PTPRF-205ENST00000414879 SYMPKQ92797 1274 aaKnown RBP13.22□□□□□ -0.29
PTPRF-205ENST00000414879 ERO1AQ96HE7 468 aa13.22□□□□□ -0.29
PTPRF-205ENST00000414879 NSRP1Q9H0G5 558 aaKnown RBP13.22□□□□□ -0.29
PTPRF-205ENST00000414879 TMEM63CQ9P1W3 806 aa13.22□□□□□ -0.29
PTPRF-205ENST00000414879 CLRN2A0PK11 232 aa13.22□□□□□ -0.29
PTPRF-205ENST00000414879 A6NNZ2 444 aa13.22□□□□□ -0.29
PTPRF-205ENST00000414879 KCNJ18B7U540 433 aa13.22□□□□□ -0.29
PTPRF-205ENST00000414879 ECE2O60344 883 aa13.22□□□□□ -0.29
PTPRF-205ENST00000414879 STAT1P42224 750 aa13.22□□□□□ -0.29
PTPRF-205ENST00000414879 BPIFB4P59827 614 aa13.22□□□□□ -0.29
PTPRF-205ENST00000414879 KCNJ12Q14500 433 aa13.22□□□□□ -0.29
PTPRF-205ENST00000414879 TUBB8Q3ZCM7 444 aa13.22□□□□□ -0.29
PTPRF-205ENST00000414879 MIS18BP1Q6P0N0 1132 aa13.22□□□□□ -0.29
PTPRF-205ENST00000414879 SGMS1Q86VZ5 419 aa13.22□□□□□ -0.29
PTPRF-205ENST00000414879 CCDC50Q8IVM0 306 aa13.22□□□□□ -0.29
PTPRF-205ENST00000414879 GPR161Q8N6U8 529 aaKnown RBP13.22□□□□□ -0.29
PTPRF-205ENST00000414879 MARCH10Q8NA82 808 aaPredicted RBP13.22□□□□□ -0.29
PTPRF-205ENST00000414879 GIMAP8Q8ND71 665 aaPredicted RBP13.22□□□□□ -0.29
PTPRF-205ENST00000414879 TMEM206Q9H813 350 aa13.22□□□□□ -0.29
PTPRF-205ENST00000414879 FEM1BQ9UK73 627 aa13.22□□□□□ -0.29
PTPRF-205ENST00000414879 SSX2IPQ9Y2D8 614 aa13.22□□□□□ -0.29
PTPRF-205ENST00000414879 ADAMTSL3P82987 1691 aa13.22□□□□□ -0.29
PTPRF-205ENST00000414879 PNOCQ13519 176 aa13.22□□□□□ -0.29
PTPRF-205ENST00000414879 PI16Q6UXB8 463 aa13.22□□□□□ -0.29
PTPRF-205ENST00000414879 NCAPG2Q86XI2 1143 aa13.22□□□□□ -0.29
PTPRF-205ENST00000414879 LZTFL1Q9NQ48 299 aa13.22□□□□□ -0.29
PTPRF-205ENST00000414879 SPOPO43791 374 aa13.21□□□□□ -0.29
PTPRF-205ENST00000414879 RAD17O75943 681 aa13.21□□□□□ -0.29
PTPRF-205ENST00000414879 LIG4P49917 911 aa13.21□□□□□ -0.29
PTPRF-205ENST00000414879 DIXDC1Q155Q3 683 aa13.21□□□□□ -0.29
PTPRF-205ENST00000414879 TAB2Q9NYJ8 693 aa13.21□□□□□ -0.29
PTPRF-205ENST00000414879 AKAP12Q02952 1782 aa13.21□□□□□ -0.29
PTPRF-205ENST00000414879 CDC25BP30305 580 aa13.21□□□□□ -0.29
PTPRF-205ENST00000414879 SBK1Q52WX2 424 aa13.21□□□□□ -0.29
PTPRF-205ENST00000414879 STYK1Q6J9G0 422 aa13.21□□□□□ -0.29
PTPRF-205ENST00000414879 ZNF577Q9BSK1 485 aa13.21□□□□□ -0.29
PTPRF-205ENST00000414879 DCP1AQ9NPI6 582 aaPredicted RBP13.21□□□□□ -0.29
PTPRF-205ENST00000414879 NR1I2O75469 434 aa13.21□□□□□ -0.3
PTPRF-205ENST00000414879 TNNC2P02585 160 aa13.21□□□□□ -0.3
PTPRF-205ENST00000414879 PLCB3Q01970 1234 aa13.21□□□□□ -0.3
PTPRF-205ENST00000414879 SHPRHQ149N8 1683 aa13.21□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 119.5 ms