RNA–Protein interactions for RNA: ENST00000413725.5

SF1-206, Transcript of splicing factor 1, human

TSL 2

Gene SF1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF1-206	ENST00000413725	HOXD10	P28358	340 aa		15.22	■□□□□ 0.03
SF1-206	ENST00000413725	FUT2	Q10981	343 aa		15.22	■□□□□ 0.03
SF1-206	ENST00000413725	USH1G	Q495M9	461 aa		15.22	■□□□□ 0.03
SF1-206	ENST00000413725	PLEKHH3	Q7Z736	793 aa		15.22	■□□□□ 0.03
SF1-206	ENST00000413725	TRERF1	Q96PN7	1200 aa		15.22	■□□□□ 0.03
SF1-206	ENST00000413725	ACAD9	Q9H845	621 aa		15.22	■□□□□ 0.03
SF1-206	ENST00000413725	HOMER2	Q9NSB8	354 aa		15.22	■□□□□ 0.03
SF1-206	ENST00000413725	RIPK3	Q9Y572	518 aa		15.22	■□□□□ 0.03
SF1-206	ENST00000413725	STRN	O43815	780 aa		15.21	■□□□□ 0.03
SF1-206	ENST00000413725	SSRP1	Q08945	709 aa	Known RBP	15.21	■□□□□ 0.03
SF1-206	ENST00000413725	NTRK3	Q16288	839 aa		15.21	■□□□□ 0.03
SF1-206	ENST00000413725	GPR142	Q7Z601	462 aa		15.21	■□□□□ 0.03
SF1-206	ENST00000413725	NECAB1	Q8N987	351 aa		15.21	■□□□□ 0.03
SF1-206	ENST00000413725	TRIM47	Q96LD4	638 aa		15.21	■□□□□ 0.03
SF1-206	ENST00000413725	SLC26A6	Q9BXS9	759 aa		15.21	■□□□□ 0.03
SF1-206	ENST00000413725	RNF26	Q9BY78	433 aa	Predicted RBP	15.21	■□□□□ 0.03
SF1-206	ENST00000413725	ARHGAP39	Q9C0H5	1083 aa		15.21	■□□□□ 0.03
SF1-206	ENST00000413725	PCDHA1	Q9Y5I3	950 aa		15.21	■□□□□ 0.03
SF1-206	ENST00000413725		V9GY48	417 aa	Predicted RBP	15.21	■□□□□ 0.03
SF1-206	ENST00000413725	PRPF3	O43395	683 aa	Known RBP	15.2	■□□□□ 0.02
SF1-206	ENST00000413725	CD2BP2	O95400	341 aa	Known RBP	15.2	■□□□□ 0.02
SF1-206	ENST00000413725	FCER1A	P12319	257 aa		15.2	■□□□□ 0.02
SF1-206	ENST00000413725	KCTD2	Q14681	263 aa		15.2	■□□□□ 0.02
SF1-206	ENST00000413725	ABRA	Q8N0Z2	381 aa		15.2	■□□□□ 0.02
SF1-206	ENST00000413725	SOCS4	Q8WXH5	440 aa		15.2	■□□□□ 0.02
SF1-206	ENST00000413725	PHKB	Q93100	1093 aa		15.2	■□□□□ 0.02
SF1-206	ENST00000413725	MMP19	Q99542	508 aa		15.2	■□□□□ 0.02
SF1-206	ENST00000413725	PRDM10	Q9NQV6	1147 aa		15.2	■□□□□ 0.02
SF1-206	ENST00000413725	MRPL11	Q9Y3B7	192 aa	Known RBP	15.2	■□□□□ 0.02
SF1-206	ENST00000413725	hCG_1642624	A0A1W2PR95	340 aa		15.19	■□□□□ 0.02
SF1-206	ENST00000413725	SLC15A5	A6NIM6	579 aa		15.19	■□□□□ 0.02
SF1-206	ENST00000413725	hCG_1984214	I3L0E3	225 aa		15.19	■□□□□ 0.02
SF1-206	ENST00000413725	PPP1R11	O60927	126 aa	Predicted RBP	15.19	■□□□□ 0.02
SF1-206	ENST00000413725	TAL1	P17542	331 aa	Predicted RBP	15.19	■□□□□ 0.02
SF1-206	ENST00000413725	PTPRE	P23469	700 aa		15.19	■□□□□ 0.02
SF1-206	ENST00000413725	CTGF	P29279	349 aa		15.19	■□□□□ 0.02
SF1-206	ENST00000413725	PRMT2	P55345	433 aa		15.19	■□□□□ 0.02
SF1-206	ENST00000413725	PFKFB3	Q16875	520 aa	Predicted RBP	15.19	■□□□□ 0.02
SF1-206	ENST00000413725	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	15.19	■□□□□ 0.02
SF1-206	ENST00000413725	HEATR3	Q7Z4Q2	680 aa		15.19	■□□□□ 0.02
SF1-206	ENST00000413725	CCDC83	Q8IWF9	413 aa		15.19	■□□□□ 0.02
SF1-206	ENST00000413725	ZNF713	Q8N859	430 aa	Predicted RBP	15.19	■□□□□ 0.02
SF1-206	ENST00000413725	TMX3	Q96JJ7	454 aa		15.19	■□□□□ 0.02
SF1-206	ENST00000413725	NUDT12	Q9BQG2	462 aa		15.19	■□□□□ 0.02
SF1-206	ENST00000413725	TRIM17	Q9Y577	477 aa		15.19	■□□□□ 0.02
SF1-206	ENST00000413725	PFAS	O15067	1338 aa		15.18	■□□□□ 0.02
SF1-206	ENST00000413725	STK36	Q9NRP7	1315 aa		15.18	■□□□□ 0.02
SF1-206	ENST00000413725	DEXI	O95424	95 aa		15.18	■□□□□ 0.02
SF1-206	ENST00000413725	SCG2	P13521	617 aa		15.18	■□□□□ 0.02
SF1-206	ENST00000413725	GRB14	Q14449	540 aa		15.18	■□□□□ 0.02
SF1-206	ENST00000413725	MUM1L1	Q5H9M0	696 aa		15.18	■□□□□ 0.02
SF1-206	ENST00000413725	MCF2L2	Q86YR7	1114 aa		15.18	■□□□□ 0.02
SF1-206	ENST00000413725	ANKRD35	Q8N283	1001 aa		15.18	■□□□□ 0.02
SF1-206	ENST00000413725	DDX11	Q96FC9	970 aa		15.18	■□□□□ 0.02
SF1-206	ENST00000413725	LLPH	Q9BRT6	129 aa	Known RBP	15.18	■□□□□ 0.02
SF1-206	ENST00000413725	MAF1	Q9H063	256 aa		15.18	■□□□□ 0.02
SF1-206	ENST00000413725	NFIB	O00712	420 aa		15.17	■□□□□ 0.02
SF1-206	ENST00000413725	ADORA2A	P29274	412 aa		15.17	■□□□□ 0.02
SF1-206	ENST00000413725	MORN1	Q5T089	497 aa		15.17	■□□□□ 0.02
SF1-206	ENST00000413725	PPP1R18	Q6NYC8	613 aa		15.17	■□□□□ 0.02
SF1-206	ENST00000413725	NSMF	Q6X4W1	530 aa		15.17	■□□□□ 0.02
SF1-206	ENST00000413725	OTOP1	Q7RTM1	612 aa		15.17	■□□□□ 0.02
SF1-206	ENST00000413725	CTU1	Q7Z7A3	348 aa	Known RBP	15.17	■□□□□ 0.02
SF1-206	ENST00000413725	HSCB	Q8IWL3	235 aa		15.17	■□□□□ 0.02
SF1-206	ENST00000413725	NSUN7	Q8NE18	718 aa	Known RBP	15.17	■□□□□ 0.02
SF1-206	ENST00000413725	CCDC12	Q8WUD4	166 aa	Predicted RBP	15.17	■□□□□ 0.02
SF1-206	ENST00000413725	CLEC4D	Q8WXI8	215 aa		15.17	■□□□□ 0.02
SF1-206	ENST00000413725	WASF1	Q92558	559 aa		15.17	■□□□□ 0.02
SF1-206	ENST00000413725	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	15.17	■□□□□ 0.02
SF1-206	ENST00000413725	SNX21	Q969T3	373 aa		15.17	■□□□□ 0.02
SF1-206	ENST00000413725	A1CF	Q9NQ94	594 aa	Known RBP	15.17	■□□□□ 0.02
SF1-206	ENST00000413725	SLC5A4	Q9NY91	659 aa		15.17	■□□□□ 0.02
SF1-206	ENST00000413725	SRRD	Q9UH36	339 aa		15.17	■□□□□ 0.02
SF1-206	ENST00000413725	KIAA1217	Q5T5P2	1943 aa		15.17	■□□□□ 0.02
SF1-206	ENST00000413725	MYH7B	A7E2Y1	1941 aa		15.16	■□□□□ 0.02
SF1-206	ENST00000413725	PTPDC1	A2A3K4	754 aa		15.16	■□□□□ 0.02
SF1-206	ENST00000413725	PPFIA3	O75145	1194 aa		15.16	■□□□□ 0.02
SF1-206	ENST00000413725	CTDNEP1	O95476	244 aa		15.16	■□□□□ 0.02
SF1-206	ENST00000413725	RGS2	P41220	211 aa		15.16	■□□□□ 0.02
SF1-206	ENST00000413725	NAPA	P54920	295 aa		15.16	■□□□□ 0.02
SF1-206	ENST00000413725	CAP1	Q01518	475 aa		15.16	■□□□□ 0.02
SF1-206	ENST00000413725	PRKCZ	Q05513	592 aa		15.16	■□□□□ 0.02
SF1-206	ENST00000413725	ST3GAL1	Q11201	340 aa		15.16	■□□□□ 0.02
SF1-206	ENST00000413725	MAP2K5	Q13163	448 aa		15.16	■□□□□ 0.02
SF1-206	ENST00000413725	WWC2	Q6AWC2	1192 aa		15.16	■□□□□ 0.02
SF1-206	ENST00000413725	RNF207	Q6ZRF8	634 aa		15.16	■□□□□ 0.02
SF1-206	ENST00000413725	DPP9	Q86TI2	863 aa		15.16	■□□□□ 0.02
SF1-206	ENST00000413725	SAMD3	Q8N6K7	520 aa		15.16	■□□□□ 0.02
SF1-206	ENST00000413725	RGS22	Q8NE09	1264 aa		15.16	■□□□□ 0.02
SF1-206	ENST00000413725	BARHL2	Q9NY43	387 aa		15.16	■□□□□ 0.02
SF1-206	ENST00000413725	ORC3	Q9UBD5	711 aa	Predicted RBP	15.16	■□□□□ 0.02
SF1-206	ENST00000413725		K7ELQ4	463 aa	Predicted RBP	15.15	■□□□□ 0.02
SF1-206	ENST00000413725	STXBP3	O00186	592 aa		15.15	■□□□□ 0.02
SF1-206	ENST00000413725	FLT3LG	P49771	235 aa		15.15	■□□□□ 0.02
SF1-206	ENST00000413725	HMGN5	P82970	282 aa	Known RBP	15.15	■□□□□ 0.02
SF1-206	ENST00000413725	PKN1	Q16512	942 aa		15.15	■□□□□ 0.02
SF1-206	ENST00000413725	CCDC148	Q8NFR7	591 aa		15.15	■□□□□ 0.02
SF1-206	ENST00000413725	RAET1E	Q8TD07	263 aa		15.15	■□□□□ 0.02
SF1-206	ENST00000413725	CUL5	Q93034	780 aa		15.15	■□□□□ 0.02
SF1-206	ENST00000413725	APBA2	Q99767	749 aa		15.15	■□□□□ 0.02

Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms