RNA–Protein interactions for RNA: ENST00000413658.6

ZNF3-205, Transcript of zinc finger protein 3, human

TSL 1 (best) BASIC

Gene ZNF3, Length 1,441 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ZNF3-205	ENST00000413658	CCDC82	Q8N4S0	544 aa		11.92	□□□□□ -0.5
ZNF3-205	ENST00000413658	ZNF296	Q8WUU4	475 aa	Predicted RBP	11.92	□□□□□ -0.5
ZNF3-205	ENST00000413658	ZSCAN31	Q96LW9	406 aa	Predicted RBP	11.92	□□□□□ -0.5
ZNF3-205	ENST00000413658	TEX13B	Q9BXU2	312 aa		11.92	□□□□□ -0.5
ZNF3-205	ENST00000413658	PNMA6F	A0A0J9YX94	578 aa		11.91	□□□□□ -0.5
ZNF3-205	ENST00000413658	hCG_1642624	A0A1W2PR95	340 aa		11.91	□□□□□ -0.5
ZNF3-205	ENST00000413658	MCM2	P49736	904 aa		11.91	□□□□□ -0.5
ZNF3-205	ENST00000413658	PLS1	Q14651	629 aa		11.91	□□□□□ -0.5
ZNF3-205	ENST00000413658	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	11.91	□□□□□ -0.5
ZNF3-205	ENST00000413658	SHCBP1	Q8NEM2	672 aa		11.91	□□□□□ -0.5
ZNF3-205	ENST00000413658	PHKB	Q93100	1093 aa		11.91	□□□□□ -0.5
ZNF3-205	ENST00000413658	TMX3	Q96JJ7	454 aa		11.91	□□□□□ -0.5
ZNF3-205	ENST00000413658	ARHGAP39	Q9C0H5	1083 aa		11.91	□□□□□ -0.5
ZNF3-205	ENST00000413658	EFCC1	Q9HA90	598 aa		11.91	□□□□□ -0.5
ZNF3-205	ENST00000413658	SH2B1	Q9NRF2	756 aa	Predicted RBP	11.91	□□□□□ -0.5
ZNF3-205	ENST00000413658	PRPF3	O43395	683 aa	Known RBP	11.9	□□□□□ -0.5
ZNF3-205	ENST00000413658	DHX16	O60231	1041 aa	Known RBP	11.9	□□□□□ -0.5
ZNF3-205	ENST00000413658	DTNB	O60941	627 aa		11.9	□□□□□ -0.5
ZNF3-205	ENST00000413658	FKTN	O75072	461 aa		11.9	□□□□□ -0.5
ZNF3-205	ENST00000413658	ERCC3	P19447	782 aa		11.9	□□□□□ -0.5
ZNF3-205	ENST00000413658	CCNA1	P78396	465 aa		11.9	□□□□□ -0.5
ZNF3-205	ENST00000413658	PKN1	Q16512	942 aa		11.9	□□□□□ -0.5
ZNF3-205	ENST00000413658	HOMER1	Q86YM7	354 aa		11.9	□□□□□ -0.5
ZNF3-205	ENST00000413658	CD99L2	Q8TCZ2	262 aa		11.9	□□□□□ -0.5
ZNF3-205	ENST00000413658	CLEC4D	Q8WXI8	215 aa		11.9	□□□□□ -0.5
ZNF3-205	ENST00000413658	PIBF1	Q8WXW3	757 aa		11.9	□□□□□ -0.5
ZNF3-205	ENST00000413658	SNX21	Q969T3	373 aa		11.9	□□□□□ -0.5
ZNF3-205	ENST00000413658	RRP36	Q96EU6	259 aa	Known RBP	11.9	□□□□□ -0.5
ZNF3-205	ENST00000413658	TRIM47	Q96LD4	638 aa		11.9	□□□□□ -0.5
ZNF3-205	ENST00000413658	CCPG1	Q9ULG6	757 aa		11.9	□□□□□ -0.5
ZNF3-205	ENST00000413658		V9GY48	417 aa	Predicted RBP	11.9	□□□□□ -0.5
ZNF3-205	ENST00000413658	MCM3AP	O60318	1980 aa		11.89	□□□□□ -0.51
ZNF3-205	ENST00000413658	OPLAH	O14841	1288 aa		11.89	□□□□□ -0.51
ZNF3-205	ENST00000413658	PPFIA3	O75145	1194 aa		11.89	□□□□□ -0.51
ZNF3-205	ENST00000413658	FMNL1	O95466	1100 aa	Predicted RBP	11.89	□□□□□ -0.51
ZNF3-205	ENST00000413658	SLC25A27	O95847	323 aa		11.89	□□□□□ -0.51
ZNF3-205	ENST00000413658	PYGB	P11216	843 aa		11.89	□□□□□ -0.51
ZNF3-205	ENST00000413658	MAPK4	P31152	587 aa		11.89	□□□□□ -0.51
ZNF3-205	ENST00000413658	CTCF	P49711	727 aa	Predicted RBP	11.89	□□□□□ -0.51
ZNF3-205	ENST00000413658	TKFC	Q3LXA3	575 aa		11.89	□□□□□ -0.51
ZNF3-205	ENST00000413658	MUM1L1	Q5H9M0	696 aa		11.89	□□□□□ -0.51
ZNF3-205	ENST00000413658	FBXO11	Q86XK2	927 aa		11.89	□□□□□ -0.51
ZNF3-205	ENST00000413658	NSUN7	Q8NE18	718 aa	Known RBP	11.89	□□□□□ -0.51
ZNF3-205	ENST00000413658	AMN	Q9BXJ7	453 aa		11.89	□□□□□ -0.51
ZNF3-205	ENST00000413658	RNF26	Q9BY78	433 aa	Predicted RBP	11.89	□□□□□ -0.51
ZNF3-205	ENST00000413658	ZMYND15	Q9H091	742 aa		11.89	□□□□□ -0.51
ZNF3-205	ENST00000413658	MROH8	Q9H579	483 aa		11.89	□□□□□ -0.51
ZNF3-205	ENST00000413658	CTDP1	Q9Y5B0	961 aa	Predicted RBP	11.89	□□□□□ -0.51
ZNF3-205	ENST00000413658	CPLX1	O14810	134 aa		11.88	□□□□□ -0.51
ZNF3-205	ENST00000413658	CHRM1	P11229	460 aa	Predicted RBP	11.88	□□□□□ -0.51
ZNF3-205	ENST00000413658	ALAS1	P13196	640 aa		11.88	□□□□□ -0.51
ZNF3-205	ENST00000413658	FDPS	P14324	419 aa	Known RBP	11.88	□□□□□ -0.51
ZNF3-205	ENST00000413658	COPB2	P35606	906 aa		11.88	□□□□□ -0.51
ZNF3-205	ENST00000413658	PSMC4	P43686	418 aa		11.88	□□□□□ -0.51
ZNF3-205	ENST00000413658	LBX1	P52954	281 aa		11.88	□□□□□ -0.51
ZNF3-205	ENST00000413658	PFKFB3	Q16875	520 aa	Predicted RBP	11.88	□□□□□ -0.51
ZNF3-205	ENST00000413658	USH1G	Q495M9	461 aa		11.88	□□□□□ -0.51
ZNF3-205	ENST00000413658	WWC2	Q6AWC2	1192 aa		11.88	□□□□□ -0.51
ZNF3-205	ENST00000413658	TYW1B	Q6NUM6	668 aa		11.88	□□□□□ -0.51
ZNF3-205	ENST00000413658	GPR142	Q7Z601	462 aa		11.88	□□□□□ -0.51
ZNF3-205	ENST00000413658	NCAPG2	Q86XI2	1143 aa		11.88	□□□□□ -0.51
ZNF3-205	ENST00000413658	CCDC83	Q8IWF9	413 aa		11.88	□□□□□ -0.51
ZNF3-205	ENST00000413658	CHST13	Q8NET6	341 aa		11.88	□□□□□ -0.51
ZNF3-205	ENST00000413658	SMARCC2	Q8TAQ2	1214 aa		11.88	□□□□□ -0.51
ZNF3-205	ENST00000413658	USP6NL	Q92738	828 aa		11.88	□□□□□ -0.51
ZNF3-205	ENST00000413658	COA7	Q96BR5	231 aa		11.88	□□□□□ -0.51
ZNF3-205	ENST00000413658	SHISA4	Q96DD7	197 aa		11.88	□□□□□ -0.51
ZNF3-205	ENST00000413658	TRERF1	Q96PN7	1200 aa		11.88	□□□□□ -0.51
ZNF3-205	ENST00000413658	SLC26A6	Q9BXS9	759 aa		11.88	□□□□□ -0.51
ZNF3-205	ENST00000413658	HOMER2	Q9NSB8	354 aa		11.88	□□□□□ -0.51
ZNF3-205	ENST00000413658	RNF146	Q9NTX7	359 aa		11.88	□□□□□ -0.51
ZNF3-205	ENST00000413658	GJD2	Q9UKL4	321 aa		11.88	□□□□□ -0.51
ZNF3-205	ENST00000413658	PNMA2	Q9UL42	364 aa		11.88	□□□□□ -0.51
ZNF3-205	ENST00000413658	PCDHA1	Q9Y5I3	950 aa		11.88	□□□□□ -0.51
ZNF3-205	ENST00000413658	NFIB	O00712	420 aa		11.87	□□□□□ -0.51
ZNF3-205	ENST00000413658	JAK2	O60674	1132 aa		11.87	□□□□□ -0.51
ZNF3-205	ENST00000413658	SCG2	P13521	617 aa		11.87	□□□□□ -0.51
ZNF3-205	ENST00000413658	SSRP1	Q08945	709 aa	Known RBP	11.87	□□□□□ -0.51
ZNF3-205	ENST00000413658	CUL4A	Q13619	759 aa		11.87	□□□□□ -0.51
ZNF3-205	ENST00000413658	GRB14	Q14449	540 aa		11.87	□□□□□ -0.51
ZNF3-205	ENST00000413658	MORN1	Q5T089	497 aa		11.87	□□□□□ -0.51
ZNF3-205	ENST00000413658	PLEKHH3	Q7Z736	793 aa		11.87	□□□□□ -0.51
ZNF3-205	ENST00000413658	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	11.87	□□□□□ -0.51
ZNF3-205	ENST00000413658	ERO1A	Q96HE7	468 aa		11.87	□□□□□ -0.51
ZNF3-205	ENST00000413658	SEC63	Q9UGP8	760 aa	Known RBP	11.87	□□□□□ -0.51
ZNF3-205	ENST00000413658	ABCB11	O95342	1321 aa		11.87	□□□□□ -0.51
ZNF3-205	ENST00000413658	STK36	Q9NRP7	1315 aa		11.87	□□□□□ -0.51
ZNF3-205	ENST00000413658	PTPDC1	A2A3K4	754 aa		11.86	□□□□□ -0.51
ZNF3-205	ENST00000413658	LRRC37A2	A6NM11	1700 aa		11.86	□□□□□ -0.51
ZNF3-205	ENST00000413658	STXBP3	O00186	592 aa		11.86	□□□□□ -0.51
ZNF3-205	ENST00000413658	CDKL5	O76039	1030 aa		11.86	□□□□□ -0.51
ZNF3-205	ENST00000413658	PTPRE	P23469	700 aa		11.86	□□□□□ -0.51
ZNF3-205	ENST00000413658	SLC4A3	P48751	1232 aa		11.86	□□□□□ -0.51
ZNF3-205	ENST00000413658	FCGRT	P55899	365 aa		11.86	□□□□□ -0.51
ZNF3-205	ENST00000413658	GHRHR	Q02643	423 aa		11.86	□□□□□ -0.51
ZNF3-205	ENST00000413658	CPLX2	Q6PUV4	134 aa	Known RBP	11.86	□□□□□ -0.51
ZNF3-205	ENST00000413658	ABRA	Q8N0Z2	381 aa		11.86	□□□□□ -0.51
ZNF3-205	ENST00000413658	ZNF579	Q8NAF0	562 aa	Known RBP	11.86	□□□□□ -0.51
ZNF3-205	ENST00000413658	RGS22	Q8NE09	1264 aa		11.86	□□□□□ -0.51
ZNF3-205	ENST00000413658	TBC1D5	Q92609	795 aa		11.86	□□□□□ -0.51

Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms