RNA–Protein interactions for RNA: ENST00000409326.6

PTCD3-202, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 522 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-202ENST00000409326 COBLO75128 1261 aa23.56■■□□□ 1.36
PTCD3-202ENST00000409326 ELNP15502 786 aa23.56■■□□□ 1.36
PTCD3-202ENST00000409326 METAP2P50579 478 aaKnown RBP eCLIP23.56■■□□□ 1.36
PTCD3-202ENST00000409326 PPP2R5BQ15173 497 aa23.56■■□□□ 1.36
PTCD3-202ENST00000409326 USH1GQ495M9 461 aa23.56■■□□□ 1.36
PTCD3-202ENST00000409326 MUM1L1Q5H9M0 696 aa23.56■■□□□ 1.36
PTCD3-202ENST00000409326 FBXO11Q86XK2 927 aa23.56■■□□□ 1.36
PTCD3-202ENST00000409326 HOMER1Q86YM7 354 aa23.56■■□□□ 1.36
PTCD3-202ENST00000409326 TRMT44Q8IYL2 757 aaKnown RBP23.56■■□□□ 1.36
PTCD3-202ENST00000409326 ANKRD35Q8N283 1001 aa23.56■■□□□ 1.36
PTCD3-202ENST00000409326 NPLOC4Q8TAT6 608 aa23.56■■□□□ 1.36
PTCD3-202ENST00000409326 TRIB2Q92519 343 aa23.56■■□□□ 1.36
PTCD3-202ENST00000409326 PIGSQ96S52 555 aa23.56■■□□□ 1.36
PTCD3-202ENST00000409326 ALDH8A1Q9H2A2 487 aaPredicted RBP23.56■■□□□ 1.36
PTCD3-202ENST00000409326 SLC5A4Q9NY91 659 aa23.56■■□□□ 1.36
PTCD3-202ENST00000409326 ABCB11O95342 1321 aa23.56■■□□□ 1.36
PTCD3-202ENST00000409326 AMNQ9BXJ7 453 aa23.55■■□□□ 1.36
PTCD3-202ENST00000409326 A1CFQ9NQ94 594 aaKnown RBP23.55■■□□□ 1.36
PTCD3-202ENST00000409326 PFASO15067 1338 aa23.55■■□□□ 1.36
PTCD3-202ENST00000409326 MCM3APO60318 1980 aa23.54■■□□□ 1.36
PTCD3-202ENST00000409326 DNAJC25-GNG10A0A024R161 153 aa23.54■■□□□ 1.36
PTCD3-202ENST00000409326 HMGCRP04035 888 aa23.54■■□□□ 1.36
PTCD3-202ENST00000409326 PGK2P07205 417 aa23.54■■□□□ 1.36
PTCD3-202ENST00000409326 CCL14Q16627 93 aa23.54■■□□□ 1.36
PTCD3-202ENST00000409326 CMTR1Q8N1G2 835 aaKnown RBP23.54■■□□□ 1.36
PTCD3-202ENST00000409326 CLEC4DQ8WXI8 215 aa23.54■■□□□ 1.36
PTCD3-202ENST00000409326 DDX11Q96FC9 970 aa23.54■■□□□ 1.36
PTCD3-202ENST00000409326 ZNF333Q96JL9 665 aa23.54■■□□□ 1.36
PTCD3-202ENST00000409326 BACH2Q9BYV9 841 aa23.54■■□□□ 1.36
PTCD3-202ENST00000409326 FAM217BQ9NTX9 383 aaPredicted RBP23.54■■□□□ 1.36
PTCD3-202ENST00000409326 DIS3Q9Y2L1 958 aaKnown RBP23.54■■□□□ 1.36
PTCD3-202ENST00000409326 BRCA2P51587 3418 aa23.53■■□□□ 1.36
PTCD3-202ENST00000409326 PNMA6FA0A0J9YX94 578 aa23.53■■□□□ 1.36
PTCD3-202ENST00000409326 CCDC196A0A1B0GTZ2 297 aa23.53■■□□□ 1.36
PTCD3-202ENST00000409326 NFIBO00712 420 aa23.53■■□□□ 1.36
PTCD3-202ENST00000409326 PPP1R11O60927 126 aaPredicted RBP23.53■■□□□ 1.36
PTCD3-202ENST00000409326 PDIA3P30101 505 aaKnown RBP23.53■■□□□ 1.36
PTCD3-202ENST00000409326 CDC27P30260 824 aa23.53■■□□□ 1.36
PTCD3-202ENST00000409326 ZNF792Q3KQV3 632 aa23.53■■□□□ 1.36
PTCD3-202ENST00000409326 RRP36Q96EU6 259 aaKnown RBP23.53■■□□□ 1.36
PTCD3-202ENST00000409326 KIF2CQ99661 725 aa23.53■■□□□ 1.36
PTCD3-202ENST00000409326 CNTNAP5Q8WYK1 1306 aa23.53■■□□□ 1.36
PTCD3-202ENST00000409326 INHAP05111 366 aa23.52■■□□□ 1.36
PTCD3-202ENST00000409326 NEK4P51957 841 aa23.52■■□□□ 1.36
PTCD3-202ENST00000409326 UBXN2AP68543 259 aa23.52■■□□□ 1.36
PTCD3-202ENST00000409326 TRAF1Q13077 416 aa23.52■■□□□ 1.36
PTCD3-202ENST00000409326 ANKRD1Q15327 319 aa23.52■■□□□ 1.36
PTCD3-202ENST00000409326 OLFML2BQ68BL8 750 aa23.52■■□□□ 1.36
PTCD3-202ENST00000409326 ZNF274Q96GC6 653 aaPredicted RBP23.52■■□□□ 1.36
PTCD3-202ENST00000409326 MAML3Q96JK9 1138 aa23.52■■□□□ 1.36
PTCD3-202ENST00000409326 CYP39A1Q9NYL5 469 aa23.52■■□□□ 1.36
PTCD3-202ENST00000409326 FLRT1Q9NZU1 646 aa23.52■■□□□ 1.36
PTCD3-202ENST00000409326 BIN2Q9UBW5 565 aaPredicted RBP23.52■■□□□ 1.36
PTCD3-202ENST00000409326 SEC63Q9UGP8 760 aaKnown RBP23.52■■□□□ 1.36
PTCD3-202ENST00000409326 IGHA2P01877 340 aa23.51■■□□□ 1.35
PTCD3-202ENST00000409326 AK2P54819 239 aa23.51■■□□□ 1.35
PTCD3-202ENST00000409326 FUT2Q10981 343 aa23.51■■□□□ 1.35
PTCD3-202ENST00000409326 NSMFQ6X4W1 530 aa23.51■■□□□ 1.35
PTCD3-202ENST00000409326 CCDC82Q8N4S0 544 aa23.51■■□□□ 1.35
PTCD3-202ENST00000409326 PIBF1Q8WXW3 757 aa23.51■■□□□ 1.35
PTCD3-202ENST00000409326 MRPL11Q9Y3B7 192 aaKnown RBP23.51■■□□□ 1.35
PTCD3-202ENST00000409326 ADD1P35611 737 aaKnown RBP23.5■■□□□ 1.35
PTCD3-202ENST00000409326 FAM133AQ8N9E0 248 aa23.5■■□□□ 1.35
PTCD3-202ENST00000409326 RGS22Q8NE09 1264 aa23.5■■□□□ 1.35
PTCD3-202ENST00000409326 LARP6Q9BRS8 491 aaKnown RBP23.5■■□□□ 1.35
PTCD3-202ENST00000409326 MAF1Q9H063 256 aa23.5■■□□□ 1.35
PTCD3-202ENST00000409326 PCDHA1Q9Y5I3 950 aa23.5■■□□□ 1.35
PTCD3-202ENST00000409326 POTEB2H3BUK9 544 aa23.49■■□□□ 1.35
PTCD3-202ENST00000409326 TRIM32Q13049 653 aa23.49■■□□□ 1.35
PTCD3-202ENST00000409326 RNF207Q6ZRF8 634 aa23.49■■□□□ 1.35
PTCD3-202ENST00000409326 TBC1D32Q96NH3 1257 aa23.49■■□□□ 1.35
PTCD3-202ENST00000409326 KIAA0100Q14667 2235 aaKnown RBP23.49■■□□□ 1.35
PTCD3-202ENST00000409326 PTPDC1A2A3K4 754 aa23.48■■□□□ 1.35
PTCD3-202ENST00000409326 CCT2P78371 535 aaKnown RBP23.48■■□□□ 1.35
PTCD3-202ENST00000409326 BAATQ14032 418 aaPredicted RBP23.48■■□□□ 1.35
PTCD3-202ENST00000409326 MAP3K21Q5TCX8 1036 aa23.48■■□□□ 1.35
PTCD3-202ENST00000409326 MFSD14CQ5VZR4 134 aa23.48■■□□□ 1.35
PTCD3-202ENST00000409326 SLC30A10Q6XR72 485 aa23.48■■□□□ 1.35
PTCD3-202ENST00000409326 ZNF467Q7Z7K2 595 aaPredicted RBP23.48■■□□□ 1.35
PTCD3-202ENST00000409326 MCF2L2Q86YR7 1114 aa23.48■■□□□ 1.35
PTCD3-202ENST00000409326 FGD4Q96M96 766 aa23.48■■□□□ 1.35
PTCD3-202ENST00000409326 TPCN1Q9ULQ1 816 aa23.48■■□□□ 1.35
PTCD3-202ENST00000409326 LRRC37A2A6NM11 1700 aa23.47■■□□□ 1.35
PTCD3-202ENST00000409326 RPS6P62753 249 aaKnown RBP23.47■■□□□ 1.35
PTCD3-202ENST00000409326 CNTN2Q02246 1040 aa23.47■■□□□ 1.35
PTCD3-202ENST00000409326 MTFR1Q15390 333 aa23.47■■□□□ 1.35
PTCD3-202ENST00000409326 MSL3Q8N5Y2 521 aaKnown RBP23.47■■□□□ 1.35
PTCD3-202ENST00000409326 NCOA5Q9HCD5 579 aaKnown RBP23.47■■□□□ 1.35
PTCD3-202ENST00000409326 FRMPD3Q5JV73 1810 aa23.47■■□□□ 1.35
PTCD3-202ENST00000409326 hCG_1642624A0A1W2PR95 340 aa23.46■■□□□ 1.35
PTCD3-202ENST00000409326 OPLAHO14841 1288 aa23.46■■□□□ 1.35
PTCD3-202ENST00000409326 PRKAR2AP13861 404 aaKnown RBP23.46■■□□□ 1.35
PTCD3-202ENST00000409326 CYP2C19P33261 490 aa23.46■■□□□ 1.35
PTCD3-202ENST00000409326 GHRHRQ02643 423 aa23.46■■□□□ 1.35
PTCD3-202ENST00000409326 CACNB2Q08289 660 aaPredicted RBP23.46■■□□□ 1.35
PTCD3-202ENST00000409326 NTRK3Q16288 839 aa23.46■■□□□ 1.35
PTCD3-202ENST00000409326 MAMDC4Q6UXC1 1216 aa23.46■■□□□ 1.35
PTCD3-202ENST00000409326 TINF2Q9BSI4 451 aa23.46■■□□□ 1.35
PTCD3-202ENST00000409326 RPTORQ8N122 1335 aa23.45■■□□□ 1.34
PTCD3-202ENST00000409326 SYNGAP1Q96PV0 1343 aa23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms