RNA–Protein interactions for RNA: ENST00000409076.6

SNX13-201, Transcript of sorting nexin 13, humanhuman

TSL 2

Gene SNX13, Length 3,818 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-201ENST00000409076 ZFYVE27Q5T4F4 411 aa9.27□□□□□ -0.92
SNX13-201ENST00000409076 C8orf74Q6P047 294 aa9.27□□□□□ -0.92
SNX13-201ENST00000409076 CEP57Q86XR8 500 aa9.27□□□□□ -0.92
SNX13-201ENST00000409076 TMTC2Q8N394 836 aa9.27□□□□□ -0.92
SNX13-201ENST00000409076 SH3RF3Q8TEJ3 882 aaPredicted RBP9.27□□□□□ -0.92
SNX13-201ENST00000409076 SNX29Q8TEQ0 813 aa9.27□□□□□ -0.92
SNX13-201ENST00000409076 CALML4Q96GE6 196 aa9.27□□□□□ -0.92
SNX13-201ENST00000409076 GBP3Q9H0R5 595 aa9.27□□□□□ -0.92
SNX13-201ENST00000409076 NFU1Q9UMS0 254 aa9.27□□□□□ -0.92
SNX13-201ENST00000409076 KLRF2D3W0D1 207 aa9.27□□□□□ -0.93
SNX13-201ENST00000409076 TACC1O75410 805 aa9.27□□□□□ -0.93
SNX13-201ENST00000409076 KIAA0754O94854 1291 aa9.27□□□□□ -0.93
SNX13-201ENST00000409076 MDM2Q00987 491 aaPredicted RBP9.27□□□□□ -0.93
SNX13-201ENST00000409076 ANKRD40Q6AI12 368 aa9.27□□□□□ -0.93
SNX13-201ENST00000409076 PTF1AQ7RTS3 328 aa9.27□□□□□ -0.93
SNX13-201ENST00000409076 PHLDB2Q86SQ0 1253 aa9.27□□□□□ -0.93
SNX13-201ENST00000409076 DDX42Q86XP3 938 aaKnown RBP eCLIP9.27□□□□□ -0.93
SNX13-201ENST00000409076 ELMO3Q96BJ8 720 aa9.27□□□□□ -0.93
SNX13-201ENST00000409076 CCDC43Q96MW1 224 aaKnown RBP9.27□□□□□ -0.93
SNX13-201ENST00000409076 SH2D3AQ9BRG2 576 aa9.27□□□□□ -0.93
SNX13-201ENST00000409076 SELENOOQ9BVL4 669 aa9.27□□□□□ -0.93
SNX13-201ENST00000409076 CAPN6Q9Y6Q1 641 aa9.27□□□□□ -0.93
SNX13-201ENST00000409076 PDE2AO00408 941 aaPredicted RBP9.27□□□□□ -0.93
SNX13-201ENST00000409076 COPB2P35606 906 aa9.27□□□□□ -0.93
SNX13-201ENST00000409076 BRD3Q15059 726 aa9.27□□□□□ -0.93
SNX13-201ENST00000409076 IL17AQ16552 155 aa9.27□□□□□ -0.93
SNX13-201ENST00000409076 PAXIP1Q6ZW49 1069 aaPredicted RBP9.27□□□□□ -0.93
SNX13-201ENST00000409076 POTEDQ86YR6 584 aa9.27□□□□□ -0.93
SNX13-201ENST00000409076 MB21D1Q8N884 522 aa9.27□□□□□ -0.93
SNX13-201ENST00000409076 UBLCP1Q8WVY7 318 aaPredicted RBP9.27□□□□□ -0.93
SNX13-201ENST00000409076 MRRFQ96E11 262 aaKnown RBP9.27□□□□□ -0.93
SNX13-201ENST00000409076 MTRQ99707 1265 aa9.27□□□□□ -0.93
SNX13-201ENST00000409076 CCDC87Q9NVE4 849 aa9.27□□□□□ -0.93
SNX13-201ENST00000409076 ZBTB21Q9ULJ3 1066 aa9.27□□□□□ -0.93
SNX13-201ENST00000409076 SCAF8Q9UPN6 1271 aaKnown RBP9.27□□□□□ -0.93
SNX13-201ENST00000409076 NCAPD2Q15021 1401 aa9.27□□□□□ -0.93
SNX13-201ENST00000409076 PCNTO95613 3336 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 TCRBV5S4A2TA0A5A2 114 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 SHTN1A0MZ66 631 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 EIF3CLB5ME19 914 aaKnown RBP9.26□□□□□ -0.93
SNX13-201ENST00000409076 GTPBP6O43824 516 aaPredicted RBP9.26□□□□□ -0.93
SNX13-201ENST00000409076 SORBS3O60504 671 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 ZNF18P17022 549 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 KIF5BP33176 963 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 IL6STP40189 918 aaPredicted RBP9.26□□□□□ -0.93
SNX13-201ENST00000409076 TRADDQ15628 312 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 SPAG5Q96R06 1193 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 EIF3CQ99613 913 aaKnown RBP9.26□□□□□ -0.93
SNX13-201ENST00000409076 MXD3Q9BW11 206 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 EPB41L5Q9HCM4 733 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 MROH5Q6ZUA9 1318 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 UBAP1LF5GYI3 381 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 EPHB6O15197 1021 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 CEP104O60308 925 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 HSF2BPO75031 334 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 GRIK5Q16478 980 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 TMTC3Q6ZXV5 915 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 KCTD1Q719H9 257 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 SGMS1Q86VZ5 419 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 FCHSD1Q86WN1 690 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 CCDC25Q86WR0 208 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 TBCKQ8TEA7 893 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 RNF26Q9BY78 433 aaPredicted RBP9.26□□□□□ -0.93
SNX13-201ENST00000409076 DNAJC17Q9NVM6 304 aaKnown RBP9.26□□□□□ -0.93
SNX13-201ENST00000409076 MYH8P13535 1937 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 LOC102724428A0A0B4J2F2 783 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 TDP2O95551 362 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 GJC1P36383 396 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 SIK1P57059 783 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 DHX9Q08211 1270 aaKnown RBP9.26□□□□□ -0.93
SNX13-201ENST00000409076 FAM133AQ8N9E0 248 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 STAG1Q8WVM7 1258 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 ZNF622Q969S3 477 aaKnown RBP eCLIP9.26□□□□□ -0.932e-6■■■■□ 19.6
SNX13-201ENST00000409076 GSDMAQ96QA5 445 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 LSM14BQ9BX40 385 aaKnown RBP9.26□□□□□ -0.93
SNX13-201ENST00000409076 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.26□□□□□ -0.93
SNX13-201ENST00000409076 ADAMTS1Q9UHI8 967 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 GGT7Q9UJ14 662 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 CAPN7Q9Y6W3 813 aa9.26□□□□□ -0.93
SNX13-201ENST00000409076 LRRC53A6NM62 1247 aa9.25□□□□□ -0.93
SNX13-201ENST00000409076 CLIC2O15247 247 aa9.25□□□□□ -0.93
SNX13-201ENST00000409076 LDHBP07195 334 aaKnown RBP9.25□□□□□ -0.93
SNX13-201ENST00000409076 ERCC5P28715 1186 aaPredicted RBP9.25□□□□□ -0.93
SNX13-201ENST00000409076 GUCY1A3Q02108 690 aa9.25□□□□□ -0.93
SNX13-201ENST00000409076 RSRC2Q7L4I2 434 aaKnown RBP9.25□□□□□ -0.93
SNX13-201ENST00000409076 TEX11Q8IYF3 940 aa9.25□□□□□ -0.93
SNX13-201ENST00000409076 TAF4BQ92750 862 aa9.25□□□□□ -0.93
SNX13-201ENST00000409076 SCLT1Q96NL6 688 aa9.25□□□□□ -0.93
SNX13-201ENST00000409076 LBHD1Q9BQE6 289 aaPredicted RBP9.25□□□□□ -0.93
SNX13-201ENST00000409076 PLCD4Q9BRC7 762 aa9.25□□□□□ -0.93
SNX13-201ENST00000409076 DDX39AO00148 427 aaKnown RBP9.25□□□□□ -0.93
SNX13-201ENST00000409076 CSF1RP07333 972 aa9.25□□□□□ -0.93
SNX13-201ENST00000409076 GNAT2P19087 354 aa9.25□□□□□ -0.93
SNX13-201ENST00000409076 SEC24CP53992 1094 aa9.25□□□□□ -0.93
SNX13-201ENST00000409076 SPAG1Q07617 926 aa9.25□□□□□ -0.93
SNX13-201ENST00000409076 HERC4Q5GLZ8 1057 aaPredicted RBP9.25□□□□□ -0.93
SNX13-201ENST00000409076 GOLGA5Q8TBA6 731 aa9.25□□□□□ -0.93
SNX13-201ENST00000409076 RPGRQ92834 1020 aaKnown RBP9.25□□□□□ -0.93
SNX13-201ENST00000409076 FERMT2Q96AC1 680 aa9.25□□□□□ -0.93
SNX13-201ENST00000409076 NLRP3Q96P20 1036 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms