RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 CACNB1Q02641 598 aaPredicted RBP13.24□□□□□ -0.29
HMGB1-206ENST00000405805 ACTN3Q08043 901 aaPredicted RBP13.24□□□□□ -0.29
HMGB1-206ENST00000405805 WHAMMP3Q1A5X7 153 aa13.24□□□□□ -0.29
HMGB1-206ENST00000405805 CABP7Q86V35 215 aa13.24□□□□□ -0.29
HMGB1-206ENST00000405805 PNMA1Q8ND90 353 aa13.24□□□□□ -0.29
HMGB1-206ENST00000405805 TMX4Q9H1E5 349 aaPredicted RBP13.24□□□□□ -0.29
HMGB1-206ENST00000405805 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.24□□□□□ -0.299e-13■■■■■ 192.3
HMGB1-206ENST00000405805 LRWD1Q9UFC0 647 aa13.24□□□□□ -0.29
HMGB1-206ENST00000405805 MROH5Q6ZUA9 1318 aa13.24□□□□□ -0.29
HMGB1-206ENST00000405805 NWD1Q149M9 1564 aa13.24□□□□□ -0.29
HMGB1-206ENST00000405805 A0A087WUV0 522 aaPredicted RBP13.24□□□□□ -0.29
HMGB1-206ENST00000405805 EIF4E1BA6NMX2 242 aaKnown RBP13.24□□□□□ -0.29
HMGB1-206ENST00000405805 KIF1CO43896 1103 aaKnown RBP13.24□□□□□ -0.29
HMGB1-206ENST00000405805 RFC4P35249 363 aa13.24□□□□□ -0.29
HMGB1-206ENST00000405805 CFAP58Q5T655 872 aa13.24□□□□□ -0.29
HMGB1-206ENST00000405805 RNF26Q9BY78 433 aaPredicted RBP13.24□□□□□ -0.29
HMGB1-206ENST00000405805 AGXT2Q9BYV1 514 aa13.24□□□□□ -0.29
HMGB1-206ENST00000405805 TPX2Q9ULW0 747 aaKnown RBP13.24□□□□□ -0.29
HMGB1-206ENST00000405805 NFAT5O94916 1531 aa13.24□□□□□ -0.29
HMGB1-206ENST00000405805 GTPBP6O43824 516 aaPredicted RBP13.24□□□□□ -0.29
HMGB1-206ENST00000405805 GNGT1P63211 74 aa13.24□□□□□ -0.29
HMGB1-206ENST00000405805 FAM114A1Q8IWE2 563 aa13.24□□□□□ -0.29
HMGB1-206ENST00000405805 PANX2Q96RD6 677 aa13.24□□□□□ -0.29
HMGB1-206ENST00000405805 MAP3K14Q99558 947 aa13.24□□□□□ -0.29
HMGB1-206ENST00000405805 YY1AP1Q9H869 796 aa13.24□□□□□ -0.29
HMGB1-206ENST00000405805 SALL1Q9NSC2 1324 aa13.24□□□□□ -0.29
HMGB1-206ENST00000405805 USP17L3A6NCW0 530 aa13.24□□□□□ -0.29
HMGB1-206ENST00000405805 USP17L4A6NCW7 530 aa13.24□□□□□ -0.29
HMGB1-206ENST00000405805 ATP1A1P05023 1023 aaKnown RBP13.24□□□□□ -0.29
HMGB1-206ENST00000405805 VAV2P52735 878 aa13.24□□□□□ -0.29
HMGB1-206ENST00000405805 NR1I3Q14994 352 aa13.24□□□□□ -0.29
HMGB1-206ENST00000405805 USP17L1Q7RTZ2 530 aa13.24□□□□□ -0.29
HMGB1-206ENST00000405805 EFCAB13Q8IY85 973 aa13.24□□□□□ -0.29
HMGB1-206ENST00000405805 ENO4A6NNW6 628 aa13.23□□□□□ -0.29
HMGB1-206ENST00000405805 GYPCP04921 128 aa13.23□□□□□ -0.29
HMGB1-206ENST00000405805 TCP11X2Q5H9J9 407 aa13.23□□□□□ -0.29
HMGB1-206ENST00000405805 NAIF1Q69YI7 327 aaPredicted RBP13.23□□□□□ -0.29
HMGB1-206ENST00000405805 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.23□□□□□ -0.29
HMGB1-206ENST00000405805 KCNG1Q9UIX4 513 aa13.23□□□□□ -0.29
HMGB1-206ENST00000405805 MOCS3O95396 460 aa13.23□□□□□ -0.29
HMGB1-206ENST00000405805 RASSF7Q02833 373 aa13.23□□□□□ -0.29
HMGB1-206ENST00000405805 ADAT2Q7Z6V5 191 aaKnown RBP13.23□□□□□ -0.29
HMGB1-206ENST00000405805 SLC44A5Q8NCS7 719 aa13.23□□□□□ -0.29
HMGB1-206ENST00000405805 FUT8Q9BYC5 575 aa13.23□□□□□ -0.29
HMGB1-206ENST00000405805 HPSEQ9Y251 543 aa13.23□□□□□ -0.29
HMGB1-206ENST00000405805 ESYT3A0FGR9 886 aa13.23□□□□□ -0.29
HMGB1-206ENST00000405805 HIBADHP31937 336 aaKnown RBP13.23□□□□□ -0.29
HMGB1-206ENST00000405805 RANBP1P43487 201 aa13.23□□□□□ -0.29
HMGB1-206ENST00000405805 PARP10Q53GL7 1025 aa13.23□□□□□ -0.29
HMGB1-206ENST00000405805 LRP10Q7Z4F1 713 aa13.23□□□□□ -0.29
HMGB1-206ENST00000405805 TADA2BQ86TJ2 420 aa13.23□□□□□ -0.29
HMGB1-206ENST00000405805 EXOC4Q96A65 974 aa13.23□□□□□ -0.29
HMGB1-206ENST00000405805 CNOT6LQ96LI5 555 aaKnown RBP13.23□□□□□ -0.29
HMGB1-206ENST00000405805 GPR101Q96P66 508 aaPredicted RBP13.23□□□□□ -0.29
HMGB1-206ENST00000405805 HAUS4Q9H6D7 363 aa13.23□□□□□ -0.29
HMGB1-206ENST00000405805 KLK7P49862 253 aa13.22□□□□□ -0.29
HMGB1-206ENST00000405805 ERFEQ4G0M1 354 aa13.22□□□□□ -0.29
HMGB1-206ENST00000405805 DCAF17Q5H9S7 520 aaPredicted RBP13.22□□□□□ -0.29
HMGB1-206ENST00000405805 MMS19Q96T76 1030 aa13.22□□□□□ -0.29
HMGB1-206ENST00000405805 AGPAT5Q9NUQ2 364 aa13.22□□□□□ -0.29
HMGB1-206ENST00000405805 DUSP10Q9Y6W6 482 aa13.22□□□□□ -0.29
HMGB1-206ENST00000405805 ZNF76P36508 570 aa13.22□□□□□ -0.29
HMGB1-206ENST00000405805 ADD3Q9UEY8 706 aaKnown RBP13.22□□□□□ -0.29
HMGB1-206ENST00000405805 ACTN4O43707 911 aaKnown RBP13.22□□□□□ -0.29
HMGB1-206ENST00000405805 PRDX5P30044 214 aa13.22□□□□□ -0.29
HMGB1-206ENST00000405805 LLGL1Q15334 1064 aa13.22□□□□□ -0.29
HMGB1-206ENST00000405805 NTRK3Q16288 839 aa13.22□□□□□ -0.29
HMGB1-206ENST00000405805 SGMS1Q86VZ5 419 aa13.22□□□□□ -0.29
HMGB1-206ENST00000405805 PYM1Q9BRP8 204 aaKnown RBP13.22□□□□□ -0.29
HMGB1-206ENST00000405805 MLXIPQ9HAP2 919 aa13.22□□□□□ -0.29
HMGB1-206ENST00000405805 FRMPD2Q68DX3 1309 aaPredicted RBP13.22□□□□□ -0.29
HMGB1-206ENST00000405805 H7C1D1 291 aa13.21□□□□□ -0.29
HMGB1-206ENST00000405805 NCK2O43639 380 aa13.21□□□□□ -0.29
HMGB1-206ENST00000405805 FBXW10Q5XX13 1052 aa13.21□□□□□ -0.29
HMGB1-206ENST00000405805 FOXR1Q6PIV2 292 aa13.21□□□□□ -0.29
HMGB1-206ENST00000405805 SV2BQ7L1I2 683 aa13.21□□□□□ -0.29
HMGB1-206ENST00000405805 KSR1Q8IVT5 923 aa13.21□□□□□ -0.29
HMGB1-206ENST00000405805 CCDC97Q96F63 343 aaPredicted RBP13.21□□□□□ -0.29
HMGB1-206ENST00000405805 FAM217BQ9NTX9 383 aaPredicted RBP13.21□□□□□ -0.29
HMGB1-206ENST00000405805 SRP68Q9UHB9 627 aaKnown RBP13.21□□□□□ -0.29
HMGB1-206ENST00000405805 LCMT1Q9UIC8 334 aa13.21□□□□□ -0.29
HMGB1-206ENST00000405805 A0A087X0B3 334 aa13.21□□□□□ -0.29
HMGB1-206ENST00000405805 A0A1B0GTH6 734 aa13.21□□□□□ -0.29
HMGB1-206ENST00000405805 SMCO2A6NFE2 343 aa13.21□□□□□ -0.29
HMGB1-206ENST00000405805 PLS1Q14651 629 aa13.21□□□□□ -0.29
HMGB1-206ENST00000405805 DBN1Q16643 649 aa13.21□□□□□ -0.29
HMGB1-206ENST00000405805 KRT79Q5XKE5 535 aa13.21□□□□□ -0.29
HMGB1-206ENST00000405805 PROCA1Q8NCQ7 364 aaPredicted RBP13.21□□□□□ -0.29
HMGB1-206ENST00000405805 PPANQ9NQ55 473 aaKnown RBP13.21□□□□□ -0.29
HMGB1-206ENST00000405805 BICDL2A1A5D9 508 aa13.21□□□□□ -0.3
HMGB1-206ENST00000405805 BAG3O95817 575 aa13.21□□□□□ -0.3
HMGB1-206ENST00000405805 LDHBP07195 334 aaKnown RBP13.21□□□□□ -0.3
HMGB1-206ENST00000405805 PCK1P35558 622 aa13.21□□□□□ -0.3
HMGB1-206ENST00000405805 GGCXP38435 758 aa13.21□□□□□ -0.3
HMGB1-206ENST00000405805 TRIM68Q6AZZ1 485 aa13.21□□□□□ -0.3
HMGB1-206ENST00000405805 TPTE2Q6XPS3 522 aa13.21□□□□□ -0.3
HMGB1-206ENST00000405805 CCDC43Q96MW1 224 aaKnown RBP13.21□□□□□ -0.3
HMGB1-206ENST00000405805 C6orf50Q9HD87 102 aa13.21□□□□□ -0.3
HMGB1-206ENST00000405805 CPDO75976 1380 aa13.21□□□□□ -0.3
HMGB1-206ENST00000405805 FTCDO95954 541 aa13.21□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms