RNA–Protein interactions for RNA: ENST00000396386.6

CBX3-202, Transcript of chromobox 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CBX3, Length 1,857 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3-202ENST00000396386 PRMT6Q96LA8 375 aaPredicted RBP16.88■□□□□ 0.29
CBX3-202ENST00000396386 PRIMPOLQ96LW4 560 aa16.88■□□□□ 0.29
CBX3-202ENST00000396386 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.88■□□□□ 0.29
CBX3-202ENST00000396386 HDAC9Q9UKV0 1011 aa16.88■□□□□ 0.29
CBX3-202ENST00000396386 PPP1R3GB7ZBB8 358 aa16.88■□□□□ 0.29
CBX3-202ENST00000396386 RAD21O60216 631 aa16.88■□□□□ 0.29
CBX3-202ENST00000396386 GDF11O95390 407 aa16.88■□□□□ 0.29
CBX3-202ENST00000396386 NAALADL2Q58DX5 795 aa16.88■□□□□ 0.29
CBX3-202ENST00000396386 POTEDQ86YR6 584 aa16.88■□□□□ 0.29
CBX3-202ENST00000396386 SMYD4Q8IYR2 804 aaPredicted RBP16.88■□□□□ 0.29
CBX3-202ENST00000396386 GMCL1P1Q8NEA9 526 aa16.88■□□□□ 0.29
CBX3-202ENST00000396386 CTNND2Q9UQB3 1225 aa16.88■□□□□ 0.29
CBX3-202ENST00000396386 PSDA5PKW4 1024 aaPredicted RBP16.87■□□□□ 0.29
CBX3-202ENST00000396386 SPDYE2BA6NHP3 402 aa16.87■□□□□ 0.29
CBX3-202ENST00000396386 SPDYE6P0CI01 402 aa16.87■□□□□ 0.29
CBX3-202ENST00000396386 DPEP1P16444 411 aa16.87■□□□□ 0.29
CBX3-202ENST00000396386 TNNI2P48788 182 aa16.87■□□□□ 0.29
CBX3-202ENST00000396386 CLK2P49760 499 aaKnown RBP16.87■□□□□ 0.29
CBX3-202ENST00000396386 MRPL12P52815 198 aaKnown RBP16.87■□□□□ 0.29
CBX3-202ENST00000396386 CALCRLQ16602 461 aa16.87■□□□□ 0.29
CBX3-202ENST00000396386 HSP90AA4PQ58FG1 418 aa16.87■□□□□ 0.29
CBX3-202ENST00000396386 ZNF658Q5TYW1 1059 aaPredicted RBP16.87■□□□□ 0.29
CBX3-202ENST00000396386 CSRNP1Q96S65 589 aa16.87■□□□□ 0.29
CBX3-202ENST00000396386 GLT8D2Q9H1C3 349 aa16.87■□□□□ 0.29
CBX3-202ENST00000396386 INTS13Q9NVM9 706 aa16.87■□□□□ 0.29
CBX3-202ENST00000396386 UQCRHLA0A096LP55 91 aa16.86■□□□□ 0.29
CBX3-202ENST00000396386 TMEM232C9JQI7 657 aa16.86■□□□□ 0.29
CBX3-202ENST00000396386 PSMD14O00487 310 aa16.86■□□□□ 0.29
CBX3-202ENST00000396386 UQCRHP07919 91 aa16.86■□□□□ 0.29
CBX3-202ENST00000396386 SEMA3FQ13275 785 aa16.86■□□□□ 0.29
CBX3-202ENST00000396386 UBE2SQ16763 222 aa16.86■□□□□ 0.29
CBX3-202ENST00000396386 TMEM266Q2M3C6 531 aa16.86■□□□□ 0.29
CBX3-202ENST00000396386 RBM26Q5T8P6 1007 aaKnown RBP16.86■□□□□ 0.29
CBX3-202ENST00000396386 VPS33BQ9H267 617 aa16.86■□□□□ 0.29
CBX3-202ENST00000396386 ZNF277Q9NRM2 450 aaPredicted RBP16.86■□□□□ 0.29
CBX3-202ENST00000396386 SAMSN1Q9NSI8 373 aaKnown RBP16.86■□□□□ 0.29
CBX3-202ENST00000396386 HERC5Q9UII4 1024 aaKnown RBP16.86■□□□□ 0.29
CBX3-202ENST00000396386 BRCA1P38398 1863 aaKnown RBP16.86■□□□□ 0.29
CBX3-202ENST00000396386 RAD17O75943 681 aa16.86■□□□□ 0.29
CBX3-202ENST00000396386 VIL1P09327 827 aaKnown RBP16.86■□□□□ 0.29
CBX3-202ENST00000396386 PLCG1P19174 1290 aa16.86■□□□□ 0.29
CBX3-202ENST00000396386 STX17P56962 302 aa16.86■□□□□ 0.29
CBX3-202ENST00000396386 CDC37Q16543 378 aaPredicted RBP16.86■□□□□ 0.29
CBX3-202ENST00000396386 TPD52L1Q16890 204 aaPredicted RBP16.86■□□□□ 0.29
CBX3-202ENST00000396386 QRICH1Q2TAL8 776 aa16.86■□□□□ 0.29
CBX3-202ENST00000396386 IGSF22Q8N9C0 903 aa16.86■□□□□ 0.29
CBX3-202ENST00000396386 GMCL1Q96IK5 515 aa16.86■□□□□ 0.29
CBX3-202ENST00000396386 KBTBD4Q9NVX7 518 aa16.86■□□□□ 0.29
CBX3-202ENST00000396386 TDP2O95551 362 aa16.85■□□□□ 0.29
CBX3-202ENST00000396386 KCNA3P22001 575 aa16.85■□□□□ 0.29
CBX3-202ENST00000396386 KCNJ6P48051 423 aa16.85■□□□□ 0.29
CBX3-202ENST00000396386 KCNB1Q14721 858 aa16.85■□□□□ 0.29
CBX3-202ENST00000396386 DLGAP5Q15398 846 aa16.85■□□□□ 0.29
CBX3-202ENST00000396386 CDKAL1Q5VV42 579 aa16.85■□□□□ 0.29
CBX3-202ENST00000396386 SIAH1Q8IUQ4 282 aa16.85■□□□□ 0.29
CBX3-202ENST00000396386 CCDC112Q8NEF3 446 aa16.85■□□□□ 0.29
CBX3-202ENST00000396386 C16orf45Q96MC5 204 aaPredicted RBP16.85■□□□□ 0.29
CBX3-202ENST00000396386 MTMR9Q96QG7 549 aa16.85■□□□□ 0.29
CBX3-202ENST00000396386 GMLQ99445 158 aa16.85■□□□□ 0.29
CBX3-202ENST00000396386 KCND1Q9NSA2 647 aa16.85■□□□□ 0.29
CBX3-202ENST00000396386 RWDD2AQ9UIY3 292 aa16.85■□□□□ 0.29
CBX3-202ENST00000396386 SYNPO2Q9UMS6 1093 aa16.85■□□□□ 0.29
CBX3-202ENST00000396386 FER1L6Q2WGJ9 1857 aa16.85■□□□□ 0.29
CBX3-202ENST00000396386 SLC37A4O43826 429 aa16.84■□□□□ 0.29
CBX3-202ENST00000396386 GH2P01242 217 aa16.84■□□□□ 0.29
CBX3-202ENST00000396386 TECP42680 631 aa16.84■□□□□ 0.29
CBX3-202ENST00000396386 FXR2P51116 673 aaKnown RBP eCLIP16.84■□□□□ 0.294e-11■□□□□ 8.2
CBX3-202ENST00000396386 PAK1Q13153 545 aa16.84■□□□□ 0.29
CBX3-202ENST00000396386 NIM1KQ8IY84 436 aa16.84■□□□□ 0.29
CBX3-202ENST00000396386 OGFOD1Q8N543 542 aa16.84■□□□□ 0.29
CBX3-202ENST00000396386 CALML4Q96GE6 196 aa16.84■□□□□ 0.29
CBX3-202ENST00000396386 PLIN2Q99541 437 aa16.84■□□□□ 0.29
CBX3-202ENST00000396386 NAP1L4Q99733 375 aaKnown RBP16.84■□□□□ 0.29
CBX3-202ENST00000396386 RAB34Q9BZG1 259 aa16.84■□□□□ 0.29
CBX3-202ENST00000396386 PSTPIP2Q9H939 334 aa16.84■□□□□ 0.29
CBX3-202ENST00000396386 ZNF70Q9UC06 446 aaPredicted RBP16.84■□□□□ 0.29
CBX3-202ENST00000396386 A0A1B0GTH6 734 aa16.84■□□□□ 0.29
CBX3-202ENST00000396386 CLRN2A0PK11 232 aa16.84■□□□□ 0.29
CBX3-202ENST00000396386 TCP10L2B9ZVM9 353 aa16.84■□□□□ 0.29
CBX3-202ENST00000396386 NDUFB10O96000 172 aa16.84■□□□□ 0.29
CBX3-202ENST00000396386 GCFC2P16383 781 aaKnown RBP16.84■□□□□ 0.29
CBX3-202ENST00000396386 TXKP42681 527 aa16.84■□□□□ 0.29
CBX3-202ENST00000396386 PPP4R3AQ6IN85 833 aa16.84■□□□□ 0.29
CBX3-202ENST00000396386 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.84■□□□□ 0.29
CBX3-202ENST00000396386 F5H6K3 240 aa16.83■□□□□ 0.28
CBX3-202ENST00000396386 KLRC3Q07444 240 aa16.83■□□□□ 0.28
CBX3-202ENST00000396386 SPDYE2Q495Y8 402 aa16.83■□□□□ 0.28
CBX3-202ENST00000396386 SPECC1LQ69YQ0 1117 aa16.83■□□□□ 0.28
CBX3-202ENST00000396386 CCAR2Q8N163 923 aaKnown RBP16.83■□□□□ 0.28
CBX3-202ENST00000396386 MYRIPQ8NFW9 859 aa16.83■□□□□ 0.28
CBX3-202ENST00000396386 FAM151AQ8WW52 585 aa16.83■□□□□ 0.28
CBX3-202ENST00000396386 NELFBQ8WX92 580 aa16.83■□□□□ 0.28
CBX3-202ENST00000396386 CCDC47Q96A33 483 aaKnown RBP16.83■□□□□ 0.28
CBX3-202ENST00000396386 CTAGE1Q96RT6 745 aa16.83■□□□□ 0.28
CBX3-202ENST00000396386 KMT5BQ4FZB7 885 aa16.82■□□□□ 0.28
CBX3-202ENST00000396386 LRRC15Q8TF66 581 aa16.82■□□□□ 0.28
CBX3-202ENST00000396386 MMTAG2Q9BU76 263 aaKnown RBP16.82■□□□□ 0.28
CBX3-202ENST00000396386 LRWD1Q9UFC0 647 aa16.82■□□□□ 0.28
CBX3-202ENST00000396386 DDX25Q9UHL0 483 aaKnown RBP16.82■□□□□ 0.28
CBX3-202ENST00000396386 ZNRF3Q9ULT6 936 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms