RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 SYT2Q8N9I0 419 aaPredicted RBP9.49□□□□□ -0.89
LIG3-202ENST00000378526 IL1RAPL2Q9NP60 686 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 TMEM247A6NEH6 219 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 SLFN5Q08AF3 891 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 EFCAB2Q5VUJ9 269 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 SV2BQ7L1I2 683 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 CATSPER2Q96P56 530 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 NSMCE4AQ9NXX6 385 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 SUPT3HO75486 399 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 TFAP4Q01664 338 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 NR1H4Q96RI1 486 aaPredicted RBP9.49□□□□□ -0.89
LIG3-202ENST00000378526 ATAD3AQ9NVI7 634 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 EXOC6BQ9Y2D4 811 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 KRT76Q01546 638 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 ADRM1Q16186 407 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 KCTD16Q68DU8 428 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 CLSTN2Q9H4D0 955 aa9.49□□□□□ -0.89
LIG3-202ENST00000378526 CARMIL1Q5VZK9 1371 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 GUCY1B2O75343 617 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 PRKAR2BP31323 418 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 ELMSAN1Q6PJG2 1045 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 ARHGAP22Q7Z5H3 698 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 CDC23Q9UJX2 597 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 PARP3Q9Y6F1 533 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 ABCD1P33897 745 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 SF3A3Q12874 501 aaKnown RBP eCLIP9.48□□□□□ -0.891e-7■■■■□ 19.8
LIG3-202ENST00000378526 KLHL25Q9H0H3 589 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 CARD9Q9H257 536 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 TMOD4Q9NZQ9 345 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 CCPG1Q9ULG6 757 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 GNA11P29992 359 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 EMBQ6PCB8 327 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 TRMT44Q8IYL2 757 aaKnown RBP9.48□□□□□ -0.89
LIG3-202ENST00000378526 BOLA2Q9H3K6 86 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 CBX8Q9HC52 389 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 MRGBPQ9NV56 204 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 FBXL5Q9UKA1 691 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 E2F6O75461 281 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 TOMM70O94826 608 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 NR5A1Q13285 461 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 METTL24Q5JXM2 366 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 IFIT1BQ5T764 474 aaKnown RBP9.48□□□□□ -0.89
LIG3-202ENST00000378526 WBP11Q9Y2W2 641 aaKnown RBP9.48□□□□□ -0.89
LIG3-202ENST00000378526 KRT87PA6NCN2 255 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 FAM25AB3EWG3 89 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 FAM25CB3EWG5 89 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 FAM25GB3EWG6 89 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 VCAM1P19320 739 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 RAD23BP54727 409 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 LRMPQ12912 555 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 PDZD4Q76G19 769 aaPredicted RBP9.48□□□□□ -0.89
LIG3-202ENST00000378526 GRAMD1AQ96CP6 724 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 TTC25Q96NG3 672 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 MYH9P35579 1960 aaKnown RBP9.48□□□□□ -0.89
LIG3-202ENST00000378526 KCNK3O14649 394 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 SERPINB4P48594 390 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 LLPHQ9BRT6 129 aaKnown RBP9.48□□□□□ -0.89
LIG3-202ENST00000378526 PARVGQ9HBI0 331 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 NVLO15381 856 aaKnown RBP9.48□□□□□ -0.89
LIG3-202ENST00000378526 STX7O15400 261 aaKnown RBP9.48□□□□□ -0.89
LIG3-202ENST00000378526 IKBIPQ70UQ0 350 aa9.48□□□□□ -0.89
LIG3-202ENST00000378526 CCND1P24385 295 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 NNTQ13423 1086 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 CCDC144BQ3MJ40 725 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 POMGNT1Q8WZA1 660 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 SIRT1Q96EB6 747 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 NUDCD1Q96RS6 583 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 OLFML3Q9NRN5 406 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 DNALI1O14645 258 aaPredicted RBP9.47□□□□□ -0.89
LIG3-202ENST00000378526 SLC5A1P13866 664 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 KCNA3P22001 575 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 SOX6P35712 828 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 KLHL30Q0D2K2 578 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 TBC1D1Q86TI0 1168 aaPredicted RBP9.47□□□□□ -0.89
LIG3-202ENST00000378526 RASSF3Q86WH2 238 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 MYLK4Q86YV6 388 aaPredicted RBP9.47□□□□□ -0.89
LIG3-202ENST00000378526 NOSTRINQ8IVI9 506 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 BRF1Q92994 677 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 EPS8L2Q9H6S3 715 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 PARP1P09874 1014 aaKnown RBP9.47□□□□□ -0.89
LIG3-202ENST00000378526 TBL3Q12788 808 aaKnown RBP9.47□□□□□ -0.89
LIG3-202ENST00000378526 CROCCP3Q8IVE0 287 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 ZNF555Q8NEP9 628 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 DDI1Q8WTU0 396 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 CLMNQ96JQ2 1002 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 UNC45AQ9H3U1 944 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 KLHL20Q9Y2M5 609 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 GJA8P48165 433 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 GUCY2DQ02846 1103 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 SPARCL1Q14515 664 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 RINT1Q6NUQ1 792 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 KLC3Q6P597 504 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 OR8K1Q8NGG5 319 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 FNBP1Q96RU3 617 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 MOV10L1Q9BXT6 1211 aaKnown RBP9.47□□□□□ -0.89
LIG3-202ENST00000378526 SOX13Q9UN79 622 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 PPP2R2CQ9Y2T4 447 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 B4DLN1 442 aa9.47□□□□□ -0.89
LIG3-202ENST00000378526 MRPL12P52815 198 aaKnown RBP9.47□□□□□ -0.89
LIG3-202ENST00000378526 CSGALNACT2Q8N6G5 542 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms