RNA–Protein interactions for RNA: ENST00000378244.6

DEPDC4-202, Transcript of DEP domain containing 4, humanhuman

TSL 2

Gene DEPDC4, Length 2,337 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4-202ENST00000378244 ZNF274Q96GC6 653 aaPredicted RBP13.58□□□□□ -0.23
DEPDC4-202ENST00000378244 MMP19Q99542 508 aa13.58□□□□□ -0.23
DEPDC4-202ENST00000378244 GJD2Q9UKL4 321 aa13.58□□□□□ -0.23
DEPDC4-202ENST00000378244 PCDHA1Q9Y5I3 950 aa13.58□□□□□ -0.23
DEPDC4-202ENST00000378244 CCDC196A0A1B0GTZ2 297 aa13.58□□□□□ -0.24
DEPDC4-202ENST00000378244 CPLX1O14810 134 aa13.58□□□□□ -0.24
DEPDC4-202ENST00000378244 RABEP1Q15276 862 aa13.58□□□□□ -0.24
DEPDC4-202ENST00000378244 LZTS2Q9BRK4 669 aa13.58□□□□□ -0.24
DEPDC4-202ENST00000378244 SPZ1Q9BXG8 430 aa13.58□□□□□ -0.24
DEPDC4-202ENST00000378244 AMNQ9BXJ7 453 aa13.58□□□□□ -0.24
DEPDC4-202ENST00000378244 ACAD9Q9H845 621 aa13.58□□□□□ -0.24
DEPDC4-202ENST00000378244 PTPN22Q9Y2R2 807 aa13.58□□□□□ -0.24
DEPDC4-202ENST00000378244 SMCHD1A6NHR9 2005 aa13.57□□□□□ -0.24
DEPDC4-202ENST00000378244 PNMA6FA0A0J9YX94 578 aa13.57□□□□□ -0.24
DEPDC4-202ENST00000378244 CD2BP2O95400 341 aaKnown RBP13.57□□□□□ -0.24
DEPDC4-202ENST00000378244 SCRN1Q12765 414 aa13.57□□□□□ -0.24
DEPDC4-202ENST00000378244 TBC1D5Q92609 795 aa13.57□□□□□ -0.24
DEPDC4-202ENST00000378244 GPKOWQ92917 476 aaPredicted RBP eCLIP13.57□□□□□ -0.24
DEPDC4-202ENST00000378244 PURBQ96QR8 312 aaKnown RBP13.57□□□□□ -0.24
DEPDC4-202ENST00000378244 MCOLN1Q9GZU1 580 aa13.57□□□□□ -0.24
DEPDC4-202ENST00000378244 A0A0G2JMZ2 1700 aa13.57□□□□□ -0.24
DEPDC4-202ENST00000378244 PTPDC1A2A3K4 754 aa13.57□□□□□ -0.24
DEPDC4-202ENST00000378244 STRNO43815 780 aa13.57□□□□□ -0.24
DEPDC4-202ENST00000378244 COBLO75128 1261 aa13.57□□□□□ -0.24
DEPDC4-202ENST00000378244 FUT2Q10981 343 aa13.57□□□□□ -0.24
DEPDC4-202ENST00000378244 CCL14Q16627 93 aa13.57□□□□□ -0.24
DEPDC4-202ENST00000378244 CHST13Q8NET6 341 aa13.57□□□□□ -0.24
DEPDC4-202ENST00000378244 SH3TC2Q8TF17 1288 aa13.57□□□□□ -0.24
DEPDC4-202ENST00000378244 MTMR8Q96EF0 704 aa13.57□□□□□ -0.24
DEPDC4-202ENST00000378244 ALDH8A1Q9H2A2 487 aaPredicted RBP13.57□□□□□ -0.24
DEPDC4-202ENST00000378244 A1CFQ9NQ94 594 aaKnown RBP13.57□□□□□ -0.24
DEPDC4-202ENST00000378244 BIN2Q9UBW5 565 aaPredicted RBP13.57□□□□□ -0.24
DEPDC4-202ENST00000378244 CNTNAP5Q8WYK1 1306 aa13.56□□□□□ -0.24
DEPDC4-202ENST00000378244 ST18O60284 1047 aa13.56□□□□□ -0.24
DEPDC4-202ENST00000378244 GNRH1P01148 92 aa13.56□□□□□ -0.24
DEPDC4-202ENST00000378244 RCAN1P53805 252 aa13.56□□□□□ -0.24
DEPDC4-202ENST00000378244 MAP2K5Q13163 448 aa13.56□□□□□ -0.24
DEPDC4-202ENST00000378244 GRB14Q14449 540 aa13.56□□□□□ -0.24
DEPDC4-202ENST00000378244 MORN1Q5T089 497 aa13.56□□□□□ -0.24
DEPDC4-202ENST00000378244 HEATR3Q7Z4Q2 680 aa13.56□□□□□ -0.24
DEPDC4-202ENST00000378244 SLC26A6Q9BXS9 759 aa13.56□□□□□ -0.24
DEPDC4-202ENST00000378244 FBXO40Q9UH90 709 aa13.56□□□□□ -0.24
DEPDC4-202ENST00000378244 DDX49Q9Y6V7 483 aaKnown RBP13.56□□□□□ -0.24
DEPDC4-202ENST00000378244 SLC15A5A6NIM6 579 aa13.56□□□□□ -0.24
DEPDC4-202ENST00000378244 ADCY3O60266 1144 aa13.56□□□□□ -0.24
DEPDC4-202ENST00000378244 CALML3P27482 149 aa13.56□□□□□ -0.24
DEPDC4-202ENST00000378244 CNTN2Q02246 1040 aa13.56□□□□□ -0.24
DEPDC4-202ENST00000378244 NTRK3Q16288 839 aa13.56□□□□□ -0.24
DEPDC4-202ENST00000378244 SOCS4Q8WXH5 440 aa13.56□□□□□ -0.24
DEPDC4-202ENST00000378244 CLEC4DQ8WXI8 215 aa13.56□□□□□ -0.24
DEPDC4-202ENST00000378244 LIMCH1Q9UPQ0 1083 aa13.56□□□□□ -0.24
DEPDC4-202ENST00000378244 CFBP00751 764 aa13.55□□□□□ -0.24
DEPDC4-202ENST00000378244 SMARCA1P28370 1054 aa13.55□□□□□ -0.24
DEPDC4-202ENST00000378244 COPB2P35606 906 aa13.55□□□□□ -0.24
DEPDC4-202ENST00000378244 RGS2P41220 211 aa13.55□□□□□ -0.24
DEPDC4-202ENST00000378244 BAATQ14032 418 aaPredicted RBP13.55□□□□□ -0.24
DEPDC4-202ENST00000378244 PPP2R5BQ15173 497 aa13.55□□□□□ -0.24
DEPDC4-202ENST00000378244 NPLOC4Q8TAT6 608 aa13.55□□□□□ -0.24
DEPDC4-202ENST00000378244 MKI67P46013 3256 aaKnown RBP13.55□□□□□ -0.24
DEPDC4-202ENST00000378244 PFKFB2O60825 505 aa13.55□□□□□ -0.24
DEPDC4-202ENST00000378244 AKAP17AQ02040 695 aaKnown RBP13.55□□□□□ -0.24
DEPDC4-202ENST00000378244 SLC9C1Q4G0N8 1177 aa13.55□□□□□ -0.24
DEPDC4-202ENST00000378244 FBXO46Q6PJ61 603 aaPredicted RBP13.55□□□□□ -0.24
DEPDC4-202ENST00000378244 HOXA13P31271 388 aaPredicted RBP13.54□□□□□ -0.24
DEPDC4-202ENST00000378244 GRK4P32298 578 aa13.54□□□□□ -0.24
DEPDC4-202ENST00000378244 RPS6P62753 249 aaKnown RBP13.54□□□□□ -0.24
DEPDC4-202ENST00000378244 TKFCQ3LXA3 575 aa13.54□□□□□ -0.24
DEPDC4-202ENST00000378244 SLC30A10Q6XR72 485 aa13.54□□□□□ -0.24
DEPDC4-202ENST00000378244 RNF207Q6ZRF8 634 aa13.54□□□□□ -0.24
DEPDC4-202ENST00000378244 CCDC83Q8IWF9 413 aa13.54□□□□□ -0.24
DEPDC4-202ENST00000378244 TRIB2Q92519 343 aa13.54□□□□□ -0.24
DEPDC4-202ENST00000378244 USP6NLQ92738 828 aa13.54□□□□□ -0.24
DEPDC4-202ENST00000378244 CYP39A1Q9NYL5 469 aa13.54□□□□□ -0.24
DEPDC4-202ENST00000378244 FLRT1Q9NZU1 646 aa13.54□□□□□ -0.24
DEPDC4-202ENST00000378244 MRPL11Q9Y3B7 192 aaKnown RBP13.54□□□□□ -0.24
DEPDC4-202ENST00000378244 ABCB11O95342 1321 aa13.54□□□□□ -0.24
DEPDC4-202ENST00000378244 POTEB2H3BUK9 544 aa13.53□□□□□ -0.24
DEPDC4-202ENST00000378244 OPLAHO14841 1288 aa13.53□□□□□ -0.24
DEPDC4-202ENST00000378244 IFNAR1P17181 557 aa13.53□□□□□ -0.24
DEPDC4-202ENST00000378244 CYP2C19P33261 490 aa13.53□□□□□ -0.24
DEPDC4-202ENST00000378244 TRIM32Q13049 653 aa13.53□□□□□ -0.24
DEPDC4-202ENST00000378244 CPLX2Q6PUV4 134 aaKnown RBP13.53□□□□□ -0.24
DEPDC4-202ENST00000378244 APBA2Q99767 749 aa13.53□□□□□ -0.24
DEPDC4-202ENST00000378244 PKN2Q16513 984 aaKnown RBP13.53□□□□□ -0.24
DEPDC4-202ENST00000378244 WWC2Q6AWC2 1192 aa13.53□□□□□ -0.24
DEPDC4-202ENST00000378244 TNS4Q8IZW8 715 aa13.53□□□□□ -0.24
DEPDC4-202ENST00000378244 ABRAQ8N0Z2 381 aa13.53□□□□□ -0.24
DEPDC4-202ENST00000378244 GTF3C6Q969F1 213 aa13.53□□□□□ -0.24
DEPDC4-202ENST00000378244 MGAMO43451 1857 aa13.53□□□□□ -0.24
DEPDC4-202ENST00000378244 PRMT2P55345 433 aa13.52□□□□□ -0.24
DEPDC4-202ENST00000378244 SSRP1Q08945 709 aaKnown RBP13.52□□□□□ -0.24
DEPDC4-202ENST00000378244 TYW1BQ6NUM6 668 aa13.52□□□□□ -0.24
DEPDC4-202ENST00000378244 TRIM22Q8IYM9 498 aa13.52□□□□□ -0.24
DEPDC4-202ENST00000378244 AIFM3Q96NN9 605 aa13.52□□□□□ -0.24
DEPDC4-202ENST00000378244 PNMA2Q9UL42 364 aa13.52□□□□□ -0.24
DEPDC4-202ENST00000378244 CTDNEP1O95476 244 aa13.52□□□□□ -0.25
DEPDC4-202ENST00000378244 NAPAP54920 295 aa13.52□□□□□ -0.25
DEPDC4-202ENST00000378244 ST3GAL1Q11201 340 aa13.52□□□□□ -0.25
DEPDC4-202ENST00000378244 IRF5Q13568 498 aa13.52□□□□□ -0.25
DEPDC4-202ENST00000378244 PKN1Q16512 942 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms