RNA–Protein interactions for RNA: ENST00000377011.6

VRK3-202, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene VRK3, Length 1,749 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-202ENST00000377011 U3KPZ7 1027 aaPredicted RBP14.29□□□□□ -0.12
VRK3-202ENST00000377011 TNKSO95271 1327 aa14.28□□□□□ -0.12
VRK3-202ENST00000377011 FIBPO43427 364 aa14.28□□□□□ -0.12
VRK3-202ENST00000377011 IGHA2P01877 340 aa14.28□□□□□ -0.12
VRK3-202ENST00000377011 TOP1P11387 765 aaKnown RBP14.28□□□□□ -0.12
VRK3-202ENST00000377011 ADORA2AP29274 412 aa14.28□□□□□ -0.12
VRK3-202ENST00000377011 STAT3P40763 770 aa14.28□□□□□ -0.12
VRK3-202ENST00000377011 SEC23AQ15436 765 aa14.28□□□□□ -0.12
VRK3-202ENST00000377011 SNRNP48Q6IEG0 339 aaKnown RBP14.28□□□□□ -0.12
VRK3-202ENST00000377011 NBPF11Q86T75 865 aa14.28□□□□□ -0.12
VRK3-202ENST00000377011 CCAR1Q8IX12 1150 aaKnown RBP14.28□□□□□ -0.12
VRK3-202ENST00000377011 PRPF38AQ8NAV1 312 aaKnown RBP14.28□□□□□ -0.12
VRK3-202ENST00000377011 AGBL1Q96MI9 1066 aa14.28□□□□□ -0.12
VRK3-202ENST00000377011 ZSCAN10Q96SZ4 725 aaPredicted RBP14.28□□□□□ -0.12
VRK3-202ENST00000377011 RNF41Q9H4P4 317 aaPredicted RBP14.28□□□□□ -0.12
VRK3-202ENST00000377011 PRR12Q9ULL5 1215 aa14.28□□□□□ -0.12
VRK3-202ENST00000377011 SYNPO2Q9UMS6 1093 aa14.28□□□□□ -0.12
VRK3-202ENST00000377011 CCND3P30281 292 aaPredicted RBP14.27□□□□□ -0.12
VRK3-202ENST00000377011 CCNA1P78396 465 aa14.27□□□□□ -0.12
VRK3-202ENST00000377011 CACNB2Q08289 660 aaPredicted RBP14.27□□□□□ -0.12
VRK3-202ENST00000377011 LARP1BQ659C4 914 aaKnown RBP14.27□□□□□ -0.12
VRK3-202ENST00000377011 RIOX2Q8IUF8 465 aa14.27□□□□□ -0.12
VRK3-202ENST00000377011 MB21D1Q8N884 522 aa14.27□□□□□ -0.12
VRK3-202ENST00000377011 TRPV1Q8NER1 839 aa14.27□□□□□ -0.12
VRK3-202ENST00000377011 SCAND2PQ9GZW5 306 aaPredicted RBP14.27□□□□□ -0.12
VRK3-202ENST00000377011 RNF208Q9H0X6 261 aa14.27□□□□□ -0.12
VRK3-202ENST00000377011 FEM1BQ9UK73 627 aa14.27□□□□□ -0.12
VRK3-202ENST00000377011 ZNF236Q9UL36 1845 aa14.27□□□□□ -0.13
VRK3-202ENST00000377011 TCHHQ07283 1943 aa14.27□□□□□ -0.13
VRK3-202ENST00000377011 SLC15A5A6NIM6 579 aa14.27□□□□□ -0.13
VRK3-202ENST00000377011 PTMAP06454 111 aaKnown RBP14.27□□□□□ -0.13
VRK3-202ENST00000377011 TPM3P06753 285 aa14.27□□□□□ -0.13
VRK3-202ENST00000377011 SNHG28P0DPA3 235 aa14.27□□□□□ -0.13
VRK3-202ENST00000377011 PCP11498 1178 aaKnown RBP14.27□□□□□ -0.13
VRK3-202ENST00000377011 CYP2C19P33261 490 aa14.27□□□□□ -0.13
VRK3-202ENST00000377011 DNM1Q05193 864 aaKnown RBP14.27□□□□□ -0.13
VRK3-202ENST00000377011 CCDC96Q2M329 555 aa14.27□□□□□ -0.13
VRK3-202ENST00000377011 SLC35G1Q2M3R5 365 aa14.27□□□□□ -0.13
VRK3-202ENST00000377011 CCDC174Q6PII3 467 aa14.27□□□□□ -0.13
VRK3-202ENST00000377011 MTERF4Q7Z6M4 381 aaKnown RBP14.27□□□□□ -0.13
VRK3-202ENST00000377011 SHCBP1Q8NEM2 672 aa14.27□□□□□ -0.13
VRK3-202ENST00000377011 UBA5Q9GZZ9 404 aa14.27□□□□□ -0.13
VRK3-202ENST00000377011 PLXNA1Q9UIW2 1896 aa14.26□□□□□ -0.13
VRK3-202ENST00000377011 RANBP2P49792 3224 aaKnown RBP14.26□□□□□ -0.13
VRK3-202ENST00000377011 VPS37CA5D8V6 355 aaPredicted RBP14.26□□□□□ -0.13
VRK3-202ENST00000377011 HMGCRP04035 888 aa14.26□□□□□ -0.13
VRK3-202ENST00000377011 HMGB1P09429 215 aaKnown RBP14.26□□□□□ -0.13
VRK3-202ENST00000377011 PRKAR2AP13861 404 aaKnown RBP14.26□□□□□ -0.13
VRK3-202ENST00000377011 RGS2P41220 211 aa14.26□□□□□ -0.13
VRK3-202ENST00000377011 STAT2P52630 851 aa14.26□□□□□ -0.13
VRK3-202ENST00000377011 TOB2Q14106 344 aaPredicted RBP14.26□□□□□ -0.13
VRK3-202ENST00000377011 FOXD4L6Q3SYB3 417 aaPredicted RBP14.26□□□□□ -0.13
VRK3-202ENST00000377011 MAP3K21Q5TCX8 1036 aa14.26□□□□□ -0.13
VRK3-202ENST00000377011 FOXD4L3Q6VB84 417 aaPredicted RBP14.26□□□□□ -0.13
VRK3-202ENST00000377011 PPP4R3CPQ6ZMV5 832 aa14.26□□□□□ -0.13
VRK3-202ENST00000377011 MB21D2Q8IYB1 491 aaPredicted RBP14.26□□□□□ -0.13
VRK3-202ENST00000377011 SOCS4Q8WXH5 440 aa14.26□□□□□ -0.13
VRK3-202ENST00000377011 ANKS1AQ92625 1134 aa14.26□□□□□ -0.13
VRK3-202ENST00000377011 FGD4Q96M96 766 aa14.26□□□□□ -0.13
VRK3-202ENST00000377011 DEFB118Q96PH6 123 aa14.26□□□□□ -0.13
VRK3-202ENST00000377011 APBA2Q99767 749 aa14.26□□□□□ -0.13
VRK3-202ENST00000377011 HOMER2Q9NSB8 354 aa14.26□□□□□ -0.13
VRK3-202ENST00000377011 PCDH10Q9P2E7 1040 aa14.26□□□□□ -0.13
VRK3-202ENST00000377011 LCTP09848 1927 aa14.26□□□□□ -0.13
VRK3-202ENST00000377011 CEP290O15078 2479 aa14.25□□□□□ -0.13
VRK3-202ENST00000377011 BAZ2BQ9UIF8 2168 aaKnown RBP14.25□□□□□ -0.13
VRK3-202ENST00000377011 XRCC5P13010 732 aaKnown RBP14.25□□□□□ -0.13
VRK3-202ENST00000377011 ZNF543Q08ER8 600 aa14.25□□□□□ -0.13
VRK3-202ENST00000377011 MUM1L1Q5H9M0 696 aa14.25□□□□□ -0.13
VRK3-202ENST00000377011 PRAMEF19Q5SWL8 479 aa14.25□□□□□ -0.13
VRK3-202ENST00000377011 DGKHQ86XP1 1220 aa14.25□□□□□ -0.13
VRK3-202ENST00000377011 PNMA1Q8ND90 353 aa14.25□□□□□ -0.13
VRK3-202ENST00000377011 PURBQ96QR8 312 aaKnown RBP14.25□□□□□ -0.13
VRK3-202ENST00000377011 PAK6Q9NQU5 681 aaPredicted RBP14.25□□□□□ -0.13
VRK3-202ENST00000377011 MCM3APO60318 1980 aa14.25□□□□□ -0.13
VRK3-202ENST00000377011 HOXC6P09630 235 aa14.24□□□□□ -0.13
VRK3-202ENST00000377011 CCDC192P0DO97 292 aa14.24□□□□□ -0.13
VRK3-202ENST00000377011 MLLT1Q03111 559 aaPredicted RBP14.24□□□□□ -0.13
VRK3-202ENST00000377011 IKQ13123 557 aaPredicted RBP14.24□□□□□ -0.13
VRK3-202ENST00000377011 STAG2Q8N3U4 1231 aa14.24□□□□□ -0.13
VRK3-202ENST00000377011 U2AF1L4Q8WU68 220 aaKnown RBP14.24□□□□□ -0.13
VRK3-202ENST00000377011 DCAF4Q8WV16 495 aa14.24□□□□□ -0.13
VRK3-202ENST00000377011 LARP6Q9BRS8 491 aaKnown RBP14.24□□□□□ -0.13
VRK3-202ENST00000377011 LLPHQ9BRT6 129 aaKnown RBP14.24□□□□□ -0.13
VRK3-202ENST00000377011 TMEM106CQ9BVX2 250 aa14.24□□□□□ -0.13
VRK3-202ENST00000377011 TEX13BQ9BXU2 312 aa14.24□□□□□ -0.13
VRK3-202ENST00000377011 LRRC2Q9BYS8 371 aa14.24□□□□□ -0.13
VRK3-202ENST00000377011 KRT23Q9C075 422 aa14.24□□□□□ -0.13
VRK3-202ENST00000377011 XRN2Q9H0D6 950 aaKnown RBP eCLIP14.24□□□□□ -0.13
VRK3-202ENST00000377011 MROH8Q9H579 483 aa14.24□□□□□ -0.13
VRK3-202ENST00000377011 DYNC1I1O14576 645 aa14.24□□□□□ -0.13
VRK3-202ENST00000377011 ATP2A1O14983 1001 aa14.24□□□□□ -0.13
VRK3-202ENST00000377011 ZBED4O75132 1171 aa14.24□□□□□ -0.13
VRK3-202ENST00000377011 GJB1P08034 283 aa14.24□□□□□ -0.13
VRK3-202ENST00000377011 GJA8P48165 433 aa14.24□□□□□ -0.13
VRK3-202ENST00000377011 MNX1P50219 401 aaPredicted RBP14.24□□□□□ -0.13
VRK3-202ENST00000377011 UBXN2AP68543 259 aa14.24□□□□□ -0.13
VRK3-202ENST00000377011 BTNL9Q6UXG8 535 aa14.24□□□□□ -0.13
VRK3-202ENST00000377011 NECAB1Q8N987 351 aa14.24□□□□□ -0.13
VRK3-202ENST00000377011 DIS3LQ8TF46 1054 aaKnown RBP14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms