RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 GTF2IP78347 998 aa12.56□□□□□ -0.4
PTPRF-203ENST00000372407 BRDTQ58F21 947 aaPredicted RBP12.56□□□□□ -0.4
PTPRF-203ENST00000372407 FAM71BQ8TC56 605 aa12.56□□□□□ -0.4
PTPRF-203ENST00000372407 TEKT1Q969V4 418 aa12.56□□□□□ -0.4
PTPRF-203ENST00000372407 TBC1D31Q96DN5 1066 aa12.56□□□□□ -0.4
PTPRF-203ENST00000372407 VPS37BQ9H9H4 285 aa12.56□□□□□ -0.4
PTPRF-203ENST00000372407 MAGEF1Q9HAY2 307 aa12.56□□□□□ -0.4
PTPRF-203ENST00000372407 SLC39A2Q9NP94 309 aa12.56□□□□□ -0.4
PTPRF-203ENST00000372407 ATP8B1O43520 1251 aa12.56□□□□□ -0.4
PTPRF-203ENST00000372407 DPCR1Q3MIW9 517 aa12.56□□□□□ -0.4
PTPRF-203ENST00000372407 CCDC89Q8N998 374 aa12.56□□□□□ -0.4
PTPRF-203ENST00000372407 HOOK2Q96ED9 719 aa12.56□□□□□ -0.4
PTPRF-203ENST00000372407 REREQ9P2R6 1566 aa12.56□□□□□ -0.4
PTPRF-203ENST00000372407 GIPC1O14908 333 aa12.56□□□□□ -0.4
PTPRF-203ENST00000372407 TBC1D8O95759 1140 aa12.56□□□□□ -0.4
PTPRF-203ENST00000372407 PHKA1P46020 1223 aa12.56□□□□□ -0.4
PTPRF-203ENST00000372407 POLR2FP61218 127 aaKnown RBP12.56□□□□□ -0.4
PTPRF-203ENST00000372407 APBA1Q02410 837 aa12.56□□□□□ -0.4
PTPRF-203ENST00000372407 CCDC117Q8IWD4 279 aaPredicted RBP12.56□□□□□ -0.4
PTPRF-203ENST00000372407 FAM178BQ8IXR5 827 aa12.56□□□□□ -0.4
PTPRF-203ENST00000372407 LARGE2Q8N3Y3 721 aa12.56□□□□□ -0.4
PTPRF-203ENST00000372407 ANKRD13CQ8N6S4 541 aa12.56□□□□□ -0.4
PTPRF-203ENST00000372407 TUBGCP2Q9BSJ2 902 aa12.56□□□□□ -0.4
PTPRF-203ENST00000372407 H0YIN7 160 aa12.55□□□□□ -0.4
PTPRF-203ENST00000372407 CASP14P31944 242 aa12.55□□□□□ -0.4
PTPRF-203ENST00000372407 CA8P35219 290 aa12.55□□□□□ -0.4
PTPRF-203ENST00000372407 ADAM9Q13443 819 aa12.55□□□□□ -0.4
PTPRF-203ENST00000372407 SPATS2Q86XZ4 545 aaKnown RBP12.55□□□□□ -0.4
PTPRF-203ENST00000372407 ANKRD42Q8N9B4 389 aa12.55□□□□□ -0.4
PTPRF-203ENST00000372407 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.55□□□□□ -0.41e-7■■■□□ 16
PTPRF-203ENST00000372407 CAPS2Q9BXY5 557 aa12.55□□□□□ -0.4
PTPRF-203ENST00000372407 CUEDC2Q9H467 287 aa12.55□□□□□ -0.4
PTPRF-203ENST00000372407 BUB1O43683 1085 aa12.55□□□□□ -0.4
PTPRF-203ENST00000372407 N4BP1O75113 896 aaKnown RBP12.55□□□□□ -0.4
PTPRF-203ENST00000372407 CIAO1O76071 339 aa12.55□□□□□ -0.4
PTPRF-203ENST00000372407 SF3A3Q12874 501 aaKnown RBP eCLIP12.55□□□□□ -0.47e-9■■□□□ 13.3
PTPRF-203ENST00000372407 PRR16Q569H4 304 aa12.55□□□□□ -0.4
PTPRF-203ENST00000372407 OTUD6AQ7L8S5 288 aa12.55□□□□□ -0.4
PTPRF-203ENST00000372407 RIC8AQ9NPQ8 531 aa12.55□□□□□ -0.4
PTPRF-203ENST00000372407 CASC4Q6P4E1 433 aa12.55□□□□□ -0.4
PTPRF-203ENST00000372407 SLFN12Q8IYM2 578 aa12.55□□□□□ -0.4
PTPRF-203ENST00000372407 AFAP1L2Q8N4X5 818 aa12.55□□□□□ -0.4
PTPRF-203ENST00000372407 LINC00301Q8NCQ3 95 aa12.55□□□□□ -0.4
PTPRF-203ENST00000372407 ATP2A3Q93084 1043 aa12.55□□□□□ -0.4
PTPRF-203ENST00000372407 TRIM6Q9C030 488 aaPredicted RBP12.55□□□□□ -0.4
PTPRF-203ENST00000372407 PANK4Q9NVE7 773 aa12.55□□□□□ -0.4
PTPRF-203ENST00000372407 KLHL14Q9P2G3 628 aa12.55□□□□□ -0.4
PTPRF-203ENST00000372407 ASAP1Q9ULH1 1129 aa12.55□□□□□ -0.4
PTPRF-203ENST00000372407 TROVE2P10155 538 aaKnown RBP eCLIP12.55□□□□□ -0.4
PTPRF-203ENST00000372407 EEF1GP26641 437 aaKnown RBP12.55□□□□□ -0.4
PTPRF-203ENST00000372407 ATP1A2P50993 1020 aa12.55□□□□□ -0.4
PTPRF-203ENST00000372407 MIER3Q7Z3K6 550 aa12.55□□□□□ -0.4
PTPRF-203ENST00000372407 CTAGE3PQ8IX95 158 aa12.55□□□□□ -0.4
PTPRF-203ENST00000372407 FNBP4Q8N3X1 1017 aaPredicted RBP12.55□□□□□ -0.4
PTPRF-203ENST00000372407 GPKOWQ92917 476 aaPredicted RBP eCLIP12.55□□□□□ -0.4
PTPRF-203ENST00000372407 EEF2KMTQ96G04 330 aa12.55□□□□□ -0.4
PTPRF-203ENST00000372407 CARMIL3Q8ND23 1372 aa12.54□□□□□ -0.4
PTPRF-203ENST00000372407 PDE6BP35913 854 aa12.54□□□□□ -0.4
PTPRF-203ENST00000372407 DLGAP5Q15398 846 aa12.54□□□□□ -0.4
PTPRF-203ENST00000372407 VPS72Q15906 364 aa12.54□□□□□ -0.4
PTPRF-203ENST00000372407 SLC35F6Q8N357 371 aa12.54□□□□□ -0.4
PTPRF-203ENST00000372407 PPP1R13BQ96KQ4 1090 aa12.54□□□□□ -0.4
PTPRF-203ENST00000372407 IVNS1ABPQ9Y6Y0 642 aa12.54□□□□□ -0.4
PTPRF-203ENST00000372407 KRT19P08727 400 aa12.54□□□□□ -0.4
PTPRF-203ENST00000372407 YWHAEP62258 255 aaKnown RBP12.54□□□□□ -0.4
PTPRF-203ENST00000372407 RETREG2Q8NC44 543 aa12.54□□□□□ -0.4
PTPRF-203ENST00000372407 FBXO41Q8TF61 875 aa12.54□□□□□ -0.4
PTPRF-203ENST00000372407 TLR7Q9NYK1 1049 aaKnown RBP12.54□□□□□ -0.4
PTPRF-203ENST00000372407 TRPC6Q9Y210 931 aa12.54□□□□□ -0.4
PTPRF-203ENST00000372407 CRCPO75575 148 aa12.54□□□□□ -0.4
PTPRF-203ENST00000372407 PROSER3Q2NL68 480 aa12.54□□□□□ -0.4
PTPRF-203ENST00000372407 ZNF589Q86UQ0 364 aaPredicted RBP12.54□□□□□ -0.4
PTPRF-203ENST00000372407 CCDC125Q86Z20 511 aa12.54□□□□□ -0.4
PTPRF-203ENST00000372407 NLGN1Q8N2Q7 840 aa12.54□□□□□ -0.4
PTPRF-203ENST00000372407 SUPT20HQ8NEM7 779 aa12.54□□□□□ -0.4
PTPRF-203ENST00000372407 MGARPQ8TDB4 240 aa12.54□□□□□ -0.4
PTPRF-203ENST00000372407 PUS3Q9BZE2 481 aaKnown RBP12.54□□□□□ -0.4
PTPRF-203ENST00000372407 AXIN2Q9Y2T1 843 aa12.54□□□□□ -0.4
PTPRF-203ENST00000372407 GJA3Q9Y6H8 435 aa12.54□□□□□ -0.4
PTPRF-203ENST00000372407 PTPRUQ92729 1446 aa12.54□□□□□ -0.4
PTPRF-203ENST00000372407 SETBP1Q9Y6X0 1596 aa12.54□□□□□ -0.4
PTPRF-203ENST00000372407 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.54□□□□□ -0.4
PTPRF-203ENST00000372407 GOLGA8HP0CJ92 632 aa12.54□□□□□ -0.4
PTPRF-203ENST00000372407 PPP2R5DQ14738 602 aa12.54□□□□□ -0.4
PTPRF-203ENST00000372407 DPH5Q9H2P9 285 aa12.54□□□□□ -0.4
PTPRF-203ENST00000372407 GREM2Q9H772 168 aa12.54□□□□□ -0.4
PTPRF-203ENST00000372407 CAPN7Q9Y6W3 813 aa12.54□□□□□ -0.4
PTPRF-203ENST00000372407 DLC1Q96QB1 1528 aa12.53□□□□□ -0.4
PTPRF-203ENST00000372407 SLFN14P0C7P3 912 aa12.53□□□□□ -0.4
PTPRF-203ENST00000372407 ZNF853P0CG23 659 aa12.53□□□□□ -0.4
PTPRF-203ENST00000372407 KIF23Q02241 960 aaPredicted RBP12.53□□□□□ -0.4
PTPRF-203ENST00000372407 PHLDB2Q86SQ0 1253 aa12.53□□□□□ -0.4
PTPRF-203ENST00000372407 DEPTORQ8TB45 409 aa12.53□□□□□ -0.4
PTPRF-203ENST00000372407 CNOT6LQ96LI5 555 aaKnown RBP12.53□□□□□ -0.4
PTPRF-203ENST00000372407 BZW2Q9Y6E2 419 aaKnown RBP12.53□□□□□ -0.4
PTPRF-203ENST00000372407 LAD1O00515 517 aa12.53□□□□□ -0.4
PTPRF-203ENST00000372407 ADORA1P30542 326 aa12.53□□□□□ -0.4
PTPRF-203ENST00000372407 VPS41P49754 854 aa12.53□□□□□ -0.4
PTPRF-203ENST00000372407 CHRNDQ07001 517 aa12.53□□□□□ -0.4
PTPRF-203ENST00000372407 EHHADHQ08426 723 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms