RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 C9orf172C9J069 976 aa4.34□□□□□ -1.71
MCF2-202ENST00000370573 ALX3O95076 343 aa4.34□□□□□ -1.71
MCF2-202ENST00000370573 G3BP1Q13283 466 aaKnown RBP eCLIP4.34□□□□□ -1.71
MCF2-202ENST00000370573 SF3B3Q15393 1217 aaKnown RBP4.34□□□□□ -1.71
MCF2-202ENST00000370573 LRRC24Q50LG9 513 aa4.34□□□□□ -1.71
MCF2-202ENST00000370573 TPTE2Q6XPS3 522 aa4.34□□□□□ -1.71
MCF2-202ENST00000370573 FBXO11Q86XK2 927 aa4.34□□□□□ -1.71
MCF2-202ENST00000370573 LENG1Q96BZ8 264 aaPredicted RBP4.34□□□□□ -1.71
MCF2-202ENST00000370573 HHIPQ96QV1 700 aa4.34□□□□□ -1.71
MCF2-202ENST00000370573 NYXQ9GZU5 481 aa4.34□□□□□ -1.71
MCF2-202ENST00000370573 IL1RAPL2Q9NP60 686 aa4.34□□□□□ -1.71
MCF2-202ENST00000370573 SEC31BQ9NQW1 1179 aa4.34□□□□□ -1.71
MCF2-202ENST00000370573 FOXD3Q9UJU5 478 aaPredicted RBP4.34□□□□□ -1.71
MCF2-202ENST00000370573 COL4A1P02462 1669 aa4.34□□□□□ -1.71
MCF2-202ENST00000370573 CARMIL3Q8ND23 1372 aa4.34□□□□□ -1.71
MCF2-202ENST00000370573 EYA2O00167 538 aa4.34□□□□□ -1.72
MCF2-202ENST00000370573 MMP10P09238 476 aa4.34□□□□□ -1.72
MCF2-202ENST00000370573 GNA15P30679 374 aa4.34□□□□□ -1.72
MCF2-202ENST00000370573 IREB2P48200 963 aaKnown RBP4.34□□□□□ -1.72
MCF2-202ENST00000370573 NRG1Q02297 640 aaPredicted RBP4.34□□□□□ -1.72
MCF2-202ENST00000370573 ARID5AQ03989 594 aa4.34□□□□□ -1.72
MCF2-202ENST00000370573 ORC1Q13415 861 aa4.34□□□□□ -1.72
MCF2-202ENST00000370573 GJD3Q8N144 294 aa4.34□□□□□ -1.72
MCF2-202ENST00000370573 CEP120Q8N960 986 aa4.34□□□□□ -1.72
MCF2-202ENST00000370573 MICAL1Q8TDZ2 1067 aa4.34□□□□□ -1.72
MCF2-202ENST00000370573 POP1Q99575 1024 aaKnown RBP4.34□□□□□ -1.72
MCF2-202ENST00000370573 LRRCC1Q9C099 1032 aa4.34□□□□□ -1.72
MCF2-202ENST00000370573 PPME1Q9Y570 386 aa4.34□□□□□ -1.72
MCF2-202ENST00000370573 SALL3Q9BXA9 1300 aa4.34□□□□□ -1.72
MCF2-202ENST00000370573 SMNDC1O75940 238 aaKnown RBP eCLIP4.33□□□□□ -1.72
MCF2-202ENST00000370573 FGRP09769 529 aa4.33□□□□□ -1.72
MCF2-202ENST00000370573 HOXD8P13378 290 aaPredicted RBP4.33□□□□□ -1.72
MCF2-202ENST00000370573 TFCP2Q12800 502 aa4.33□□□□□ -1.72
MCF2-202ENST00000370573 IFIT5Q13325 482 aaKnown RBP4.33□□□□□ -1.72
MCF2-202ENST00000370573 OS9Q13438 667 aaPredicted RBP4.33□□□□□ -1.72
MCF2-202ENST00000370573 ADGRE1Q14246 886 aa4.33□□□□□ -1.72
MCF2-202ENST00000370573 BMS1Q14692 1282 aaKnown RBP4.33□□□□□ -1.72
MCF2-202ENST00000370573 CCDC57Q2TAC2 916 aa4.33□□□□□ -1.72
MCF2-202ENST00000370573 HSP90AB4PQ58FF6 505 aa4.33□□□□□ -1.72
MCF2-202ENST00000370573 ALKBH2Q6NS38 261 aa4.33□□□□□ -1.72
MCF2-202ENST00000370573 ZNF746Q6NUN9 644 aaPredicted RBP4.33□□□□□ -1.72
MCF2-202ENST00000370573 KIF1BPQ96EK5 621 aa4.33□□□□□ -1.72
MCF2-202ENST00000370573 PBX4Q9BYU1 374 aa4.33□□□□□ -1.72
MCF2-202ENST00000370573 CHRDQ9H2X0 955 aa4.33□□□□□ -1.72
MCF2-202ENST00000370573 RIPOR2Q9Y4F9 1068 aa4.33□□□□□ -1.72
MCF2-202ENST00000370573 MRPL42Q9Y6G3 142 aaKnown RBP4.33□□□□□ -1.72
MCF2-202ENST00000370573 MYH3P11055 1940 aa4.33□□□□□ -1.72
MCF2-202ENST00000370573 RTL9Q8NET4 1388 aa4.33□□□□□ -1.72
MCF2-202ENST00000370573 QSER1Q2KHR3 1735 aa4.33□□□□□ -1.72
MCF2-202ENST00000370573 LAMB2P55268 1798 aa4.33□□□□□ -1.72
MCF2-202ENST00000370573 ANKRD18BA2A2Z9 1011 aa4.33□□□□□ -1.72
MCF2-202ENST00000370573 EREGO14944 169 aa4.33□□□□□ -1.72
MCF2-202ENST00000370573 TNFRSF21O75509 655 aa4.33□□□□□ -1.72
MCF2-202ENST00000370573 CIAO1O76071 339 aa4.33□□□□□ -1.72
MCF2-202ENST00000370573 KIF4AO95239 1232 aa4.33□□□□□ -1.72
MCF2-202ENST00000370573 SETDB1Q15047 1291 aa4.33□□□□□ -1.72
MCF2-202ENST00000370573 CCDC152Q4G0S7 254 aa4.33□□□□□ -1.72
MCF2-202ENST00000370573 CNBD1Q8NA66 436 aa4.33□□□□□ -1.72
MCF2-202ENST00000370573 EAF2Q96CJ1 260 aaPredicted RBP4.33□□□□□ -1.72
MCF2-202ENST00000370573 CRELD1Q96HD1 420 aa4.33□□□□□ -1.72
MCF2-202ENST00000370573 OSBPL2Q9H1P3 480 aa4.33□□□□□ -1.72
MCF2-202ENST00000370573 TNRC6CQ9HCJ0 1690 aaKnown RBP4.33□□□□□ -1.72
MCF2-202ENST00000370573 TAF1P21675 1872 aa4.33□□□□□ -1.72
MCF2-202ENST00000370573 KLRG2A4D1S0 409 aaPredicted RBP4.32□□□□□ -1.72
MCF2-202ENST00000370573 RPLP1P05386 114 aaKnown RBP4.32□□□□□ -1.72
MCF2-202ENST00000370573 POLR3DP05423 398 aaPredicted RBP4.32□□□□□ -1.72
MCF2-202ENST00000370573 EPHA1P21709 976 aa4.32□□□□□ -1.72
MCF2-202ENST00000370573 ITGB7P26010 798 aa4.32□□□□□ -1.72
MCF2-202ENST00000370573 IL15P40933 162 aaPredicted RBP4.32□□□□□ -1.72
MCF2-202ENST00000370573 ATP2B2Q01814 1243 aa4.32□□□□□ -1.72
MCF2-202ENST00000370573 GNL2Q13823 731 aaKnown RBP4.32□□□□□ -1.72
MCF2-202ENST00000370573 TAF7LQ5H9L4 462 aa4.32□□□□□ -1.72
MCF2-202ENST00000370573 TSHZ3Q63HK5 1081 aa4.32□□□□□ -1.72
MCF2-202ENST00000370573 LDHAL6AQ6ZMR3 332 aa4.32□□□□□ -1.72
MCF2-202ENST00000370573 USP48Q86UV5 1035 aa4.32□□□□□ -1.72
MCF2-202ENST00000370573 SLC51AQ86UW1 340 aa4.32□□□□□ -1.72
MCF2-202ENST00000370573 TXNRD3Q86VQ6 643 aa4.32□□□□□ -1.72
MCF2-202ENST00000370573 ERC1Q8IUD2 1116 aa4.32□□□□□ -1.72
MCF2-202ENST00000370573 AGGF1Q8N302 714 aaeCLIP4.32□□□□□ -1.72
MCF2-202ENST00000370573 DTWD1Q8N5C7 304 aa4.32□□□□□ -1.72
MCF2-202ENST00000370573 GALNT11Q8NCW6 608 aa4.32□□□□□ -1.72
MCF2-202ENST00000370573 CELF1Q92879 486 aaKnown RBP4.32□□□□□ -1.72
MCF2-202ENST00000370573 CCDC8Q9H0W5 538 aaPredicted RBP4.32□□□□□ -1.72
MCF2-202ENST00000370573 STAP2Q9UGK3 403 aa4.32□□□□□ -1.72
MCF2-202ENST00000370573 SALL4Q9UJQ4 1053 aa4.32□□□□□ -1.72
MCF2-202ENST00000370573 AK5Q9Y6K8 562 aa4.32□□□□□ -1.72
MCF2-202ENST00000370573 RIC1Q4ADV7 1423 aa4.32□□□□□ -1.72
MCF2-202ENST00000370573 NRXN2Q9P2S2 1712 aa4.32□□□□□ -1.72
MCF2-202ENST00000370573 CASZ1Q86V15 1759 aa4.32□□□□□ -1.72
MCF2-202ENST00000370573 WTIPA6NIX2 430 aaPredicted RBP4.32□□□□□ -1.72
MCF2-202ENST00000370573 DLL1O00548 723 aa4.32□□□□□ -1.72
MCF2-202ENST00000370573 PHACTR2O75167 634 aa4.32□□□□□ -1.72
MCF2-202ENST00000370573 GSPT1P15170 499 aaKnown RBP4.32□□□□□ -1.72
MCF2-202ENST00000370573 PDE1AP54750 535 aa4.32□□□□□ -1.72
MCF2-202ENST00000370573 TIMM10P62072 90 aa4.32□□□□□ -1.72
MCF2-202ENST00000370573 R3HDM1Q15032 1099 aaKnown RBP4.32□□□□□ -1.72
MCF2-202ENST00000370573 RSPO4Q2I0M5 234 aaPredicted RBP4.32□□□□□ -1.72
MCF2-202ENST00000370573 CRY2Q49AN0 593 aa4.32□□□□□ -1.72
MCF2-202ENST00000370573 ALG1LQ6GMV1 187 aa4.32□□□□□ -1.72
MCF2-202ENST00000370573 IGF2-ASQ6U949 168 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms