RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 TMEM51Q9NW97 253 aa9.46□□□□□ -0.89
SYNE1-206ENST00000367253 ITM2BQ9Y287 266 aa9.46□□□□□ -0.89
SYNE1-206ENST00000367253 BIN1O00499 593 aa9.46□□□□□ -0.9
SYNE1-206ENST00000367253 HEXIM1O94992 359 aaKnown RBP9.46□□□□□ -0.9
SYNE1-206ENST00000367253 ERCC5P28715 1186 aaPredicted RBP9.46□□□□□ -0.9
SYNE1-206ENST00000367253 DOK7Q18PE1 504 aa9.46□□□□□ -0.9
SYNE1-206ENST00000367253 CERKLQ49MI3 558 aaPredicted RBP9.46□□□□□ -0.9
SYNE1-206ENST00000367253 KIFAP3Q92845 792 aa9.46□□□□□ -0.9
SYNE1-206ENST00000367253 PPP1R14BQ96C90 147 aa9.46□□□□□ -0.9
SYNE1-206ENST00000367253 CHAMP1Q96JM3 812 aa9.46□□□□□ -0.9
SYNE1-206ENST00000367253 MAP10Q9P2G4 905 aa9.46□□□□□ -0.9
SYNE1-206ENST00000367253 NOB1Q9ULX3 412 aaKnown RBP9.46□□□□□ -0.9
SYNE1-206ENST00000367253 EMILIN1Q9Y6C2 1016 aa9.46□□□□□ -0.9
SYNE1-206ENST00000367253 PHLPP2Q6ZVD8 1323 aa9.46□□□□□ -0.9
SYNE1-206ENST00000367253 TROVE2P10155 538 aaKnown RBP eCLIP9.46□□□□□ -0.9
SYNE1-206ENST00000367253 UBASH3AP57075 661 aa9.46□□□□□ -0.9
SYNE1-206ENST00000367253 BTBD8Q5XKL5 378 aa9.46□□□□□ -0.9
SYNE1-206ENST00000367253 LMBRD2Q68DH5 695 aaPredicted RBP9.46□□□□□ -0.9
SYNE1-206ENST00000367253 HAUS1Q96CS2 278 aa9.46□□□□□ -0.9
SYNE1-206ENST00000367253 SRPK1Q96SB4 655 aaKnown RBP9.46□□□□□ -0.9
SYNE1-206ENST00000367253 POLR3AO14802 1390 aaPredicted RBP9.45□□□□□ -0.9
SYNE1-206ENST00000367253 PI4KAP2A4QPH2 592 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 METAP2P50579 478 aaKnown RBP eCLIP9.45□□□□□ -0.9
SYNE1-206ENST00000367253 ARHGAP24Q8N264 748 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 PI4KAP1Q8N8J0 262 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 C17orf50Q8WW18 174 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 COQ7Q99807 217 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 MTA3Q9BTC8 594 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 TMEM165Q9HC07 324 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 IL1RAPL2Q9NP60 686 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 CPSF3Q9UKF6 684 aaKnown RBP9.45□□□□□ -0.9
SYNE1-206ENST00000367253 SEMA3EO15041 775 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 PDE6AP16499 860 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 CTCFP49711 727 aaPredicted RBP9.45□□□□□ -0.9
SYNE1-206ENST00000367253 LIG3P49916 1009 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 RTN1Q16799 776 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 NT5DC4Q86YG4 428 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 RAB11FIP4Q86YS3 637 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 DNAJC10Q8IXB1 793 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 SPAG5Q96R06 1193 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 KATNAL1Q9BW62 490 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 EHD2Q9NZN4 543 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 HESX1Q9UBX0 185 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 PPRC1Q5VV67 1664 aaKnown RBP9.45□□□□□ -0.9
SYNE1-206ENST00000367253 TLDC2A0PJX2 215 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 CAPN9O14815 690 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 PRMT3O60678 531 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 CIITAP33076 1130 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 PTPROQ16827 1216 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 NKIRAS1Q9NYS0 192 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 DAAM1Q9Y4D1 1078 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 CEP152O94986 1710 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 ENO4A6NNW6 628 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 SASH1O94885 1247 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 SPAG1Q07617 926 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 THEM5Q8N1Q8 247 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 CTAGE1Q96RT6 745 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 CARD14Q9BXL6 1004 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 CAMSAP1Q5T5Y3 1602 aa9.45□□□□□ -0.9
SYNE1-206ENST00000367253 PI4K2BG5E9Z4 385 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 GRM8O00222 908 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 BCAR3O75815 825 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 TNNC2P02585 160 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 RPLP2P05387 115 aaKnown RBP9.44□□□□□ -0.9
SYNE1-206ENST00000367253 SUPT20HL2P0C7V6 817 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 RARBP10826 455 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 MMP14P50281 582 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 MRPL28Q13084 256 aaKnown RBP9.44□□□□□ -0.9
SYNE1-206ENST00000367253 TRIM68Q6AZZ1 485 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 TAOK1Q7L7X3 1001 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 GIMAP8Q8ND71 665 aaPredicted RBP9.44□□□□□ -0.9
SYNE1-206ENST00000367253 PI4K2BQ8TCG2 481 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.44□□□□□ -0.9
SYNE1-206ENST00000367253 RHBDL2Q9NX52 303 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 MTRF1LQ9UGC7 380 aaKnown RBP9.44□□□□□ -0.9
SYNE1-206ENST00000367253 SLC4A7Q9Y6M7 1214 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 FAM135BQ49AJ0 1406 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 DEPDC5O75140 1603 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 ARPC4-TTLL3A0A0A6YYG9 625 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 RNMTO43148 476 aaKnown RBP9.44□□□□□ -0.9
SYNE1-206ENST00000367253 KRT86O43790 486 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 FDX1P10109 184 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 SYNE4Q8N205 404 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 CCDC8Q9H0W5 538 aaPredicted RBP9.44□□□□□ -0.9
SYNE1-206ENST00000367253 KCNK9Q9NPC2 374 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 IPPQ9Y573 584 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 TESPA1A2RU30 521 aaPredicted RBP9.44□□□□□ -0.9
SYNE1-206ENST00000367253 ASB14A6NK59 587 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 CFBP00751 764 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 ASNSP08243 561 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 RAG1P15918 1043 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 TMED10P49755 219 aaKnown RBP9.44□□□□□ -0.9
SYNE1-206ENST00000367253 ABCB5Q2M3G0 1257 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 NUDCD3Q8IVD9 361 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 NEK11Q8NG66 645 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 ATP6V0A1Q93050 837 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 CSRNP1Q96S65 589 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 KDM4CQ9H3R0 1056 aa9.44□□□□□ -0.9
SYNE1-206ENST00000367253 STN1Q9H668 368 aaKnown RBP9.44□□□□□ -0.9
SYNE1-206ENST00000367253 DDX21Q9NR30 783 aaKnown RBP eCLIP9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms