RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 PI4KBQ9UBF8 816 aa12□□□□□ -0.49
CLIP1-203ENST00000361654 FBXO40Q9UH90 709 aa12□□□□□ -0.49
CLIP1-203ENST00000361654 RSPH14Q9UHP6 348 aa12□□□□□ -0.49
CLIP1-203ENST00000361654 MYO3BQ8WXR4 1341 aa12□□□□□ -0.49
CLIP1-203ENST00000361654 TECP42680 631 aa12□□□□□ -0.49
CLIP1-203ENST00000361654 EVCP57679 992 aa12□□□□□ -0.49
CLIP1-203ENST00000361654 MTMR3Q13615 1198 aa12□□□□□ -0.49
CLIP1-203ENST00000361654 DIXDC1Q155Q3 683 aa12□□□□□ -0.49
CLIP1-203ENST00000361654 NBPF11Q86T75 865 aa12□□□□□ -0.49
CLIP1-203ENST00000361654 KRT12Q99456 494 aa12□□□□□ -0.49
CLIP1-203ENST00000361654 ANGPTL3Q9Y5C1 460 aa12□□□□□ -0.49
CLIP1-203ENST00000361654 CASQ2O14958 399 aaPredicted RBP12□□□□□ -0.49
CLIP1-203ENST00000361654 TBC1D8O95759 1140 aa12□□□□□ -0.49
CLIP1-203ENST00000361654 KRT3P12035 628 aa12□□□□□ -0.49
CLIP1-203ENST00000361654 GARSP41250 739 aaKnown RBP12□□□□□ -0.49
CLIP1-203ENST00000361654 CFAP221Q4G0U5 840 aa12□□□□□ -0.49
CLIP1-203ENST00000361654 CEP85LQ5SZL2 805 aa12□□□□□ -0.49
CLIP1-203ENST00000361654 ARMCX2Q7L311 632 aa12□□□□□ -0.49
CLIP1-203ENST00000361654 GADD45GIP1Q8TAE8 222 aaPredicted RBP12□□□□□ -0.49
CLIP1-203ENST00000361654 CCDC127Q96BQ5 260 aa12□□□□□ -0.49
CLIP1-203ENST00000361654 HAUS8Q9BT25 410 aa12□□□□□ -0.49
CLIP1-203ENST00000361654 LSM14BQ9BX40 385 aaKnown RBP12□□□□□ -0.49
CLIP1-203ENST00000361654 NPHP4O75161 1426 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-203ENST00000361654 hCG_1642624A0A1W2PR95 340 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 hCG_1984214I3L0E3 225 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 ZNF202O95125 648 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 CSPG5O95196 566 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 NSFP46459 744 aaKnown RBP11.99□□□□□ -0.49
CLIP1-203ENST00000361654 SURF1Q15526 300 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 ZNF713Q8N859 430 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-203ENST00000361654 RNF139Q8WU17 664 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 FAM149B1Q96BN6 582 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 TRIM31Q9BZY9 425 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 PLCB1Q9NQ66 1216 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 SERPINB13Q9UIV8 391 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 NUP153P49790 1475 aaKnown RBP11.99□□□□□ -0.49
CLIP1-203ENST00000361654 A6NNZ2 444 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 NLRP12P59046 1061 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 TUBB8Q3ZCM7 444 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 HDXQ7Z353 690 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 SNX14Q9Y5W7 946 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 MAP3K7O43318 606 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 PDE8BO95263 885 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 RNASE9P60153 205 aaKnown RBP11.99□□□□□ -0.49
CLIP1-203ENST00000361654 UBE3CQ15386 1083 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 SPICE1Q8N0Z3 855 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 PPM1KQ8N3J5 372 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 SDR42E1Q8WUS8 393 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 CDKL2Q92772 493 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 TNNQ9UQP3 1299 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 SYNJ2BP-COX16A0A087WUM0 186 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 GAP43P17677 238 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 SYT10Q6XYQ8 523 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 RRAGAQ7L523 313 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 FOXP4Q8IVH2 680 aaPredicted RBP11.99□□□□□ -0.49
CLIP1-203ENST00000361654 CACNA2D3Q8IZS8 1091 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 LRRC4Q9HBW1 653 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 COX16Q9P0S2 106 aa11.99□□□□□ -0.49
CLIP1-203ENST00000361654 ZBBXA8MT70 800 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 MMP10P09238 476 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 CPA1P15085 419 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 CIITAP33076 1130 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 STAT2P52630 851 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 USP17L8P0C7I0 530 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 ARHGAP30Q7Z6I6 1101 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-203ENST00000361654 MCUR1Q96AQ8 359 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 NT5C1BQ96P26 610 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 CARD14Q9BXL6 1004 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.98□□□□□ -0.49
CLIP1-203ENST00000361654 TTC36A6NLP5 189 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 MYL3P08590 195 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 GCFC2P16383 781 aaKnown RBP11.98□□□□□ -0.49
CLIP1-203ENST00000361654 MFAP3P55082 362 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 ARHGAP4P98171 946 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 FANCCQ00597 558 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 RNF219Q5W0B1 726 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-203ENST00000361654 COA1Q9GZY4 146 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 MAGEF1Q9HAY2 307 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 KCNH4Q9UQ05 1017 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 NFE2L3Q9Y4A8 694 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 USH1CQ9Y6N9 552 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 KIAA0232Q92628 1395 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 ARHGAP6O43182 974 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 PSAPP07602 524 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 GOLGA8HP0CJ92 632 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 CAPN2P17655 700 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 RECQLP46063 649 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-203ENST00000361654 PPP2R3AQ06190 1150 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 PAK2Q13177 524 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 KRT33BQ14525 404 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 MFSD14CQ5VZR4 134 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 ZNF274Q96GC6 653 aaPredicted RBP11.98□□□□□ -0.49
CLIP1-203ENST00000361654 DONSONQ9NYP3 566 aa11.98□□□□□ -0.49
CLIP1-203ENST00000361654 LONRF2Q1L5Z9 754 aa11.97□□□□□ -0.49
CLIP1-203ENST00000361654 RAB44Q7Z6P3 723 aaPredicted RBP11.97□□□□□ -0.49
CLIP1-203ENST00000361654 TRIM11Q96F44 468 aa11.97□□□□□ -0.49
CLIP1-203ENST00000361654 SCYL1Q96KG9 808 aa11.97□□□□□ -0.49
CLIP1-203ENST00000361654 NLRC4Q9NPP4 1024 aa11.97□□□□□ -0.49
CLIP1-203ENST00000361654 KMT5AQ9NQR1 393 aa11.97□□□□□ -0.49
CLIP1-203ENST00000361654 GOLGA8FQ08AF8 430 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms