RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 MYH10P35580 1976 aa13.57□□□□□ -0.24
CLIP3-201ENST00000360535 TNKS1BP1Q9C0C2 1729 aaKnown RBP13.57□□□□□ -0.24
CLIP3-201ENST00000360535 KRT86O43790 486 aa13.57□□□□□ -0.24
CLIP3-201ENST00000360535 TRAPPC10P48553 1259 aa13.57□□□□□ -0.24
CLIP3-201ENST00000360535 C4orf32Q8N8J7 132 aa13.57□□□□□ -0.24
CLIP3-201ENST00000360535 TANGO6Q9C0B7 1094 aa13.57□□□□□ -0.24
CLIP3-201ENST00000360535 GBP3Q9H0R5 595 aa13.57□□□□□ -0.24
CLIP3-201ENST00000360535 HAUS4Q9H6D7 363 aa13.57□□□□□ -0.24
CLIP3-201ENST00000360535 LRWD1Q9UFC0 647 aa13.57□□□□□ -0.24
CLIP3-201ENST00000360535 CYTH3O43739 400 aa13.57□□□□□ -0.24
CLIP3-201ENST00000360535 RAD21O60216 631 aa13.57□□□□□ -0.24
CLIP3-201ENST00000360535 ACTN2P35609 894 aa13.57□□□□□ -0.24
CLIP3-201ENST00000360535 EIF6P56537 245 aaKnown RBP13.57□□□□□ -0.24
CLIP3-201ENST00000360535 DNAJC21Q5F1R6 531 aaKnown RBP13.57□□□□□ -0.24
CLIP3-201ENST00000360535 C2CD5Q86YS7 1000 aa13.57□□□□□ -0.24
CLIP3-201ENST00000360535 CCDC42Q96M95 316 aa13.57□□□□□ -0.24
CLIP3-201ENST00000360535 NLRP3Q96P20 1036 aa13.57□□□□□ -0.24
CLIP3-201ENST00000360535 CWC15Q9P013 229 aaKnown RBP13.57□□□□□ -0.24
CLIP3-201ENST00000360535 CYLC1P35663 651 aaPredicted RBP13.56□□□□□ -0.24
CLIP3-201ENST00000360535 SLC7A5Q01650 507 aa13.56□□□□□ -0.24
CLIP3-201ENST00000360535 GRIK5Q16478 980 aa13.56□□□□□ -0.24
CLIP3-201ENST00000360535 EHD2Q9NZN4 543 aa13.56□□□□□ -0.24
CLIP3-201ENST00000360535 CICQ96RK0 1608 aaPredicted RBP13.56□□□□□ -0.24
CLIP3-201ENST00000360535 KLRF2D3W0D1 207 aa13.56□□□□□ -0.24
CLIP3-201ENST00000360535 SSBP05455 408 aaKnown RBP eCLIP13.56□□□□□ -0.24
CLIP3-201ENST00000360535 AMPD2Q01433 879 aa13.56□□□□□ -0.24
CLIP3-201ENST00000360535 CCDC47Q96A33 483 aaKnown RBP13.56□□□□□ -0.24
CLIP3-201ENST00000360535 PYM1Q9BRP8 204 aaKnown RBP13.56□□□□□ -0.24
CLIP3-201ENST00000360535 MLXIPQ9HAP2 919 aa13.56□□□□□ -0.24
CLIP3-201ENST00000360535 ATP8A2Q9NTI2 1148 aa13.56□□□□□ -0.24
CLIP3-201ENST00000360535 ARPP21Q9UBL0 812 aaPredicted RBP13.56□□□□□ -0.24
CLIP3-201ENST00000360535 FAM170AA1A519 330 aa13.55□□□□□ -0.24
CLIP3-201ENST00000360535 ORC4O43929 436 aa13.55□□□□□ -0.24
CLIP3-201ENST00000360535 RNF40O75150 1001 aa13.55□□□□□ -0.24
CLIP3-201ENST00000360535 DNM2P50570 870 aa13.55□□□□□ -0.24
CLIP3-201ENST00000360535 LRRC41Q15345 812 aa13.55□□□□□ -0.24
CLIP3-201ENST00000360535 SPA17Q15506 151 aa13.55□□□□□ -0.24
CLIP3-201ENST00000360535 SLC35G1Q2M3R5 365 aa13.55□□□□□ -0.24
CLIP3-201ENST00000360535 FAM182BQ5T319 152 aa13.55□□□□□ -0.24
CLIP3-201ENST00000360535 ARL6IP4Q66PJ3 421 aaKnown RBP13.55□□□□□ -0.24
CLIP3-201ENST00000360535 HNRNPLLQ8WVV9 542 aaKnown RBP13.55□□□□□ -0.24
CLIP3-201ENST00000360535 PDE2AO00408 941 aaPredicted RBP13.55□□□□□ -0.24
CLIP3-201ENST00000360535 KLRC4O43908 158 aa13.55□□□□□ -0.24
CLIP3-201ENST00000360535 MYBL2P10244 700 aa13.55□□□□□ -0.24
CLIP3-201ENST00000360535 KRT83P78385 493 aa13.55□□□□□ -0.24
CLIP3-201ENST00000360535 KIF5AQ12840 1032 aa13.55□□□□□ -0.24
CLIP3-201ENST00000360535 EZH2Q15910 746 aaKnown RBP13.55□□□□□ -0.24
CLIP3-201ENST00000360535 KCTD19Q17RG1 926 aaPredicted RBP13.55□□□□□ -0.24
CLIP3-201ENST00000360535 TTC19Q6DKK2 380 aaPredicted RBP13.55□□□□□ -0.24
CLIP3-201ENST00000360535 PPP1R3FQ6ZSY5 799 aaPredicted RBP13.55□□□□□ -0.24
CLIP3-201ENST00000360535 TRAPPC11Q7Z392 1133 aa13.55□□□□□ -0.24
CLIP3-201ENST00000360535 GJA10Q969M2 543 aa13.55□□□□□ -0.24
CLIP3-201ENST00000360535 CRACR2AQ9BSW2 395 aa13.55□□□□□ -0.24
CLIP3-201ENST00000360535 TMEM260Q9NX78 707 aa13.55□□□□□ -0.24
CLIP3-201ENST00000360535 CAPN11Q9UMQ6 739 aa13.55□□□□□ -0.24
CLIP3-201ENST00000360535 ANKRD36CQ5JPF3 1778 aa13.55□□□□□ -0.24
CLIP3-201ENST00000360535 DUOX1Q9NRD9 1551 aa13.55□□□□□ -0.24
CLIP3-201ENST00000360535 SMCO2A6NFE2 343 aa13.55□□□□□ -0.24
CLIP3-201ENST00000360535 LDHBP07195 334 aaKnown RBP13.55□□□□□ -0.24
CLIP3-201ENST00000360535 RNASE9P60153 205 aaKnown RBP13.55□□□□□ -0.24
CLIP3-201ENST00000360535 FBXO33Q7Z6M2 555 aa13.55□□□□□ -0.24
CLIP3-201ENST00000360535 GOLGA5Q8TBA6 731 aa13.55□□□□□ -0.24
CLIP3-201ENST00000360535 P2RX5Q93086 422 aa13.55□□□□□ -0.24
CLIP3-201ENST00000360535 DUSP9Q99956 384 aaKnown RBP13.55□□□□□ -0.24
CLIP3-201ENST00000360535 ACBD3Q9H3P7 528 aa13.55□□□□□ -0.24
CLIP3-201ENST00000360535 MAD2L2Q9UI95 211 aa13.55□□□□□ -0.24
CLIP3-201ENST00000360535 TIAM2Q8IVF5 1701 aa13.55□□□□□ -0.24
CLIP3-201ENST00000360535 AKR1B10O60218 316 aa13.54□□□□□ -0.24
CLIP3-201ENST00000360535 MOCS3O95396 460 aa13.54□□□□□ -0.24
CLIP3-201ENST00000360535 USP14P54578 494 aa13.54□□□□□ -0.24
CLIP3-201ENST00000360535 ARID5AQ03989 594 aa13.54□□□□□ -0.24
CLIP3-201ENST00000360535 TTI2Q6NXR4 508 aa13.54□□□□□ -0.24
CLIP3-201ENST00000360535 PTF1AQ7RTS3 328 aa13.54□□□□□ -0.24
CLIP3-201ENST00000360535 AMOTL1Q8IY63 956 aa13.54□□□□□ -0.24
CLIP3-201ENST00000360535 CCDC155Q8N6L0 562 aa13.54□□□□□ -0.24
CLIP3-201ENST00000360535 SETDB2Q96T68 719 aa13.54□□□□□ -0.24
CLIP3-201ENST00000360535 TMEM47Q9BQJ4 181 aa13.54□□□□□ -0.24
CLIP3-201ENST00000360535 KANSL2Q9H9L4 492 aa13.54□□□□□ -0.24
CLIP3-201ENST00000360535 POLD4Q9HCU8 107 aa13.54□□□□□ -0.24
CLIP3-201ENST00000360535 TBC1D7Q9P0N9 293 aa13.54□□□□□ -0.24
CLIP3-201ENST00000360535 FEZ2Q9UHY8 353 aaPredicted RBP13.54□□□□□ -0.24
CLIP3-201ENST00000360535 DOCK2Q92608 1830 aa13.54□□□□□ -0.24
CLIP3-201ENST00000360535 FRMPD2Q68DX3 1309 aaPredicted RBP13.54□□□□□ -0.24
CLIP3-201ENST00000360535 MYO1CO00159 1063 aa13.54□□□□□ -0.24
CLIP3-201ENST00000360535 EEF1GP26641 437 aaKnown RBP13.54□□□□□ -0.24
CLIP3-201ENST00000360535 TUBB2AQ13885 445 aa13.54□□□□□ -0.24
CLIP3-201ENST00000360535 SOGA3Q5TF21 947 aa13.54□□□□□ -0.24
CLIP3-201ENST00000360535 CDK5RAP3Q96JB5 506 aa13.54□□□□□ -0.24
CLIP3-201ENST00000360535 TUBB2BQ9BVA1 445 aa13.54□□□□□ -0.24
CLIP3-201ENST00000360535 MYO1AQ9UBC5 1043 aa13.54□□□□□ -0.24
CLIP3-201ENST00000360535 NCK2O43639 380 aa13.54□□□□□ -0.24
CLIP3-201ENST00000360535 BUB1O43683 1085 aa13.54□□□□□ -0.24
CLIP3-201ENST00000360535 ZNF507Q8TCN5 953 aa13.54□□□□□ -0.24
CLIP3-201ENST00000360535 NLRC4Q9NPP4 1024 aa13.54□□□□□ -0.24
CLIP3-201ENST00000360535 MYH14Q7Z406 1995 aaKnown RBP13.54□□□□□ -0.24
CLIP3-201ENST00000360535 BCORQ6W2J9 1755 aa13.53□□□□□ -0.24
CLIP3-201ENST00000360535 MARCH6O60337 910 aa13.53□□□□□ -0.24
CLIP3-201ENST00000360535 OR52Z1P0C646 297 aa13.53□□□□□ -0.24
CLIP3-201ENST00000360535 RRAGAQ7L523 313 aa13.53□□□□□ -0.24
CLIP3-201ENST00000360535 LINC00116Q8NCU8 138 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 324.4 ms