RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 EBAG9O00559 213 aa17.1■□□□□ 0.33
PTPRF-201ENST00000359947 TTBK2Q6IQ55 1244 aa17.1■□□□□ 0.33
PTPRF-201ENST00000359947 SCYL1Q96KG9 808 aa17.1■□□□□ 0.33
PTPRF-201ENST00000359947 CCND2P30279 289 aa17.1■□□□□ 0.33
PTPRF-201ENST00000359947 MORC3Q14149 939 aa17.1■□□□□ 0.33
PTPRF-201ENST00000359947 MED23Q9ULK4 1368 aa17.1■□□□□ 0.33
PTPRF-201ENST00000359947 PTGDRQ13258 359 aa17.09■□□□□ 0.33
PTPRF-201ENST00000359947 ADAM9Q13443 819 aa17.09■□□□□ 0.33
PTPRF-201ENST00000359947 TAOK1Q7L7X3 1001 aa17.09■□□□□ 0.33
PTPRF-201ENST00000359947 NBPF11Q86T75 865 aa17.09■□□□□ 0.33
PTPRF-201ENST00000359947 FTOQ9C0B1 505 aaKnown RBP eCLIP17.09■□□□□ 0.33
PTPRF-201ENST00000359947 AMFRQ9UKV5 643 aa17.09■□□□□ 0.33
PTPRF-201ENST00000359947 PBRM1Q86U86 1689 aa17.09■□□□□ 0.33
PTPRF-201ENST00000359947 NAA25Q14CX7 972 aa17.09■□□□□ 0.33
PTPRF-201ENST00000359947 RPS6KA2Q15349 733 aa17.09■□□□□ 0.33
PTPRF-201ENST00000359947 HADHQ16836 314 aaKnown RBP17.09■□□□□ 0.33
PTPRF-201ENST00000359947 TLR7Q9NYK1 1049 aaKnown RBP17.09■□□□□ 0.33
PTPRF-201ENST00000359947 TTC36A6NLP5 189 aa17.09■□□□□ 0.33
PTPRF-201ENST00000359947 M0R2C6 588 aa17.09■□□□□ 0.33
PTPRF-201ENST00000359947 BBOX1O75936 387 aa17.09■□□□□ 0.33
PTPRF-201ENST00000359947 ARFGAP2Q8N6H7 521 aa17.09■□□□□ 0.33
PTPRF-201ENST00000359947 SLC7A3Q8WY07 619 aa17.09■□□□□ 0.33
PTPRF-201ENST00000359947 DYNLL2Q96FJ2 89 aa17.09■□□□□ 0.33
PTPRF-201ENST00000359947 CHMP6Q96FZ7 201 aa17.09■□□□□ 0.33
PTPRF-201ENST00000359947 RILPQ96NA2 401 aa17.09■□□□□ 0.33
PTPRF-201ENST00000359947 ABCF3Q9NUQ8 709 aa17.09■□□□□ 0.33
PTPRF-201ENST00000359947 SWAP70Q9UH65 585 aa17.09■□□□□ 0.33
PTPRF-201ENST00000359947 BZW2Q9Y6E2 419 aaKnown RBP17.09■□□□□ 0.33
PTPRF-201ENST00000359947 POLR2FP61218 127 aaKnown RBP17.09■□□□□ 0.33
PTPRF-201ENST00000359947 NXNQ6DKJ4 435 aa17.09■□□□□ 0.33
PTPRF-201ENST00000359947 METTL23Q86XA0 190 aa17.09■□□□□ 0.33
PTPRF-201ENST00000359947 COA7Q96BR5 231 aa17.09■□□□□ 0.33
PTPRF-201ENST00000359947 GDAP1L1Q96MZ0 367 aa17.09■□□□□ 0.33
PTPRF-201ENST00000359947 PCIF1Q9H4Z3 704 aa17.09■□□□□ 0.33
PTPRF-201ENST00000359947 LARSQ9P2J5 1176 aaKnown RBP17.09■□□□□ 0.33
PTPRF-201ENST00000359947 TYW5A2RUC4 315 aaKnown RBP17.09■□□□□ 0.33
PTPRF-201ENST00000359947 I3L4J1 428 aa17.09■□□□□ 0.33
PTPRF-201ENST00000359947 LGSNQ5TDP6 509 aa17.09■□□□□ 0.33
PTPRF-201ENST00000359947 CCDC84Q86UT8 332 aaPredicted RBP17.09■□□□□ 0.33
PTPRF-201ENST00000359947 SNX25Q9H3E2 840 aa17.09■□□□□ 0.33
PTPRF-201ENST00000359947 USP17L8P0C7I0 530 aa17.08■□□□□ 0.33
PTPRF-201ENST00000359947 PFKFB1P16118 471 aa17.08■□□□□ 0.33
PTPRF-201ENST00000359947 MTERF2Q49AM1 385 aa17.08■□□□□ 0.33
PTPRF-201ENST00000359947 C17orf53Q8N3J3 647 aaPredicted RBP17.08■□□□□ 0.33
PTPRF-201ENST00000359947 COL4A3BPQ9Y5P4 624 aa17.08■□□□□ 0.33
PTPRF-201ENST00000359947 SRGAP2CP0DJJ0 459 aa17.08■□□□□ 0.33
PTPRF-201ENST00000359947 GBP6Q6ZN66 633 aa17.08■□□□□ 0.33
PTPRF-201ENST00000359947 PRKAB2O43741 272 aa17.08■□□□□ 0.32
PTPRF-201ENST00000359947 ANKRD36BP1Q96IX9 119 aa17.08■□□□□ 0.32
PTPRF-201ENST00000359947 ZNF341Q9BYN7 854 aa17.08■□□□□ 0.32
PTPRF-201ENST00000359947 FAM149B1Q96BN6 582 aa17.08■□□□□ 0.32
PTPRF-201ENST00000359947 SLITRK6Q9H5Y7 841 aa17.08■□□□□ 0.32
PTPRF-201ENST00000359947 PER1O15534 1290 aaPredicted RBP17.08■□□□□ 0.32
PTPRF-201ENST00000359947 GANCQ8TET4 914 aa17.08■□□□□ 0.32
PTPRF-201ENST00000359947 TFAMQ00059 246 aaKnown RBP17.08■□□□□ 0.32
PTPRF-201ENST00000359947 C2orf69Q8N8R5 385 aa17.08■□□□□ 0.32
PTPRF-201ENST00000359947 CEP170P1Q96L14 293 aa17.08■□□□□ 0.32
PTPRF-201ENST00000359947 CARD6Q9BX69 1037 aa17.08■□□□□ 0.32
PTPRF-201ENST00000359947 PIM2Q9P1W9 311 aa17.08■□□□□ 0.32
PTPRF-201ENST00000359947 FAM49AQ9H0Q0 323 aaPredicted RBP17.07■□□□□ 0.32
PTPRF-201ENST00000359947 NPHP4O75161 1426 aaPredicted RBP17.07■□□□□ 0.32
PTPRF-201ENST00000359947 CYP2D7A0A087X1C5 515 aa17.07■□□□□ 0.32
PTPRF-201ENST00000359947 A6NJR5 290 aa17.07■□□□□ 0.32
PTPRF-201ENST00000359947 KCNK3O14649 394 aa17.07■□□□□ 0.32
PTPRF-201ENST00000359947 GSTA1P08263 222 aa17.07■□□□□ 0.32
PTPRF-201ENST00000359947 GSTA2P09210 222 aa17.07■□□□□ 0.32
PTPRF-201ENST00000359947 KIF11P52732 1056 aa17.07■□□□□ 0.32
PTPRF-201ENST00000359947 MYSM1Q5VVJ2 828 aa17.07■□□□□ 0.32
PTPRF-201ENST00000359947 USP17L2Q6R6M4 530 aa17.07■□□□□ 0.32
PTPRF-201ENST00000359947 SPDYE2BA6NHP3 402 aa17.07■□□□□ 0.32
PTPRF-201ENST00000359947 IGSF3O75054 1194 aa17.07■□□□□ 0.32
PTPRF-201ENST00000359947 SPDYE6P0CI01 402 aa17.07■□□□□ 0.32
PTPRF-201ENST00000359947 HOXA13P31271 388 aaPredicted RBP17.07■□□□□ 0.32
PTPRF-201ENST00000359947 PI16Q6UXB8 463 aa17.07■□□□□ 0.32
PTPRF-201ENST00000359947 ARHGEF2Q92974 986 aaKnown RBP17.07■□□□□ 0.32
PTPRF-201ENST00000359947 KMT5AQ9NQR1 393 aa17.07■□□□□ 0.32
PTPRF-201ENST00000359947 TUBB4AP04350 444 aa17.07■□□□□ 0.32
PTPRF-201ENST00000359947 BMP3P12645 472 aa17.07■□□□□ 0.32
PTPRF-201ENST00000359947 ADCY8P40145 1251 aa17.07■□□□□ 0.32
PTPRF-201ENST00000359947 MUM1L1Q5H9M0 696 aa17.07■□□□□ 0.32
PTPRF-201ENST00000359947 TMTC1Q8IUR5 882 aa17.07■□□□□ 0.32
PTPRF-201ENST00000359947 SYMPKQ92797 1274 aaKnown RBP17.07■□□□□ 0.32
PTPRF-201ENST00000359947 DDAH1O94760 285 aa17.07■□□□□ 0.32
PTPRF-201ENST00000359947 U2AF2P26368 475 aaKnown RBP eCLIP17.07■□□□□ 0.329e-12■■□□□ 11.6
PTPRF-201ENST00000359947 NEDD9Q14511 834 aa17.07■□□□□ 0.32
PTPRF-201ENST00000359947 CFAP221Q4G0U5 840 aa17.07■□□□□ 0.32
PTPRF-201ENST00000359947 ATP2A3Q93084 1043 aa17.07■□□□□ 0.32
PTPRF-201ENST00000359947 SERPINB13Q9UIV8 391 aa17.07■□□□□ 0.32
PTPRF-201ENST00000359947 ANKRD42Q8N9B4 389 aa17.06■□□□□ 0.32
PTPRF-201ENST00000359947 CCDC68Q9H2F9 335 aa17.06■□□□□ 0.32
PTPRF-201ENST00000359947 H0YCG3 227 aa17.06■□□□□ 0.32
PTPRF-201ENST00000359947 ADALQ6DHV7 355 aa17.06■□□□□ 0.32
PTPRF-201ENST00000359947 PPME1Q9Y570 386 aa17.06■□□□□ 0.32
PTPRF-201ENST00000359947 ARAP3Q8WWN8 1544 aa17.06■□□□□ 0.32
PTPRF-201ENST00000359947 GUCY2FP51841 1108 aa17.06■□□□□ 0.32
PTPRF-201ENST00000359947 ATP6V0A1Q93050 837 aa17.06■□□□□ 0.32
PTPRF-201ENST00000359947 PIGSQ96S52 555 aa17.06■□□□□ 0.32
PTPRF-201ENST00000359947 SMYD2Q9NRG4 433 aa17.06■□□□□ 0.32
PTPRF-201ENST00000359947 NXF1Q9UBU9 619 aaKnown RBP17.06■□□□□ 0.32
PTPRF-201ENST00000359947 KDM5AP29375 1690 aaKnown RBP17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms