RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 CABYRO75952 493 aa13.4□□□□□ -0.26
RTN3-204ENST00000354497 PTGS1P23219 599 aa13.4□□□□□ -0.26
RTN3-204ENST00000354497 TTLL4Q14679 1199 aa13.4□□□□□ -0.26
RTN3-204ENST00000354497 FSCN1Q16658 493 aaKnown RBP13.4□□□□□ -0.26
RTN3-204ENST00000354497 FTSJ3Q8IY81 847 aaKnown RBP13.4□□□□□ -0.26
RTN3-204ENST00000354497 PRPF38AQ8NAV1 312 aaKnown RBP13.4□□□□□ -0.26
RTN3-204ENST00000354497 HLA-CQ95604 372 aa13.4□□□□□ -0.26
RTN3-204ENST00000354497 FGD4Q96M96 766 aa13.4□□□□□ -0.26
RTN3-204ENST00000354497 FBXO40Q9UH90 709 aa13.4□□□□□ -0.26
RTN3-204ENST00000354497 LRRC37A2A6NM11 1700 aa13.4□□□□□ -0.26
RTN3-204ENST00000354497 ASTN1O14525 1302 aa13.4□□□□□ -0.26
RTN3-204ENST00000354497 EPOPA6NHQ4 379 aa13.39□□□□□ -0.27
RTN3-204ENST00000354497 F5H6K3 240 aa13.39□□□□□ -0.27
RTN3-204ENST00000354497 DYNC1LI2O43237 492 aaPredicted RBP13.39□□□□□ -0.27
RTN3-204ENST00000354497 TLL1O43897 1013 aa13.39□□□□□ -0.27
RTN3-204ENST00000354497 NDUFB10O96000 172 aa13.39□□□□□ -0.27
RTN3-204ENST00000354497 CNTN2Q02246 1040 aa13.39□□□□□ -0.27
RTN3-204ENST00000354497 KLRC3Q07444 240 aa13.39□□□□□ -0.27
RTN3-204ENST00000354497 SLC43A3Q8NBI5 491 aa13.39□□□□□ -0.27
RTN3-204ENST00000354497 KHSRPQ92945 711 aaKnown RBP eCLIP13.39□□□□□ -0.272e-6■■□□□ 11.6
RTN3-204ENST00000354497 SLC4A4Q9Y6R1 1079 aa13.39□□□□□ -0.27
RTN3-204ENST00000354497 ACTN1P12814 892 aa13.39□□□□□ -0.27
RTN3-204ENST00000354497 CHST13Q8NET6 341 aa13.39□□□□□ -0.27
RTN3-204ENST00000354497 KATNBL1Q9H079 304 aa13.39□□□□□ -0.27
RTN3-204ENST00000354497 GRIN2DO15399 1336 aa13.38□□□□□ -0.27
RTN3-204ENST00000354497 XIRP2A4UGR9 3374 aa13.38□□□□□ -0.27
RTN3-204ENST00000354497 GPR37L1O60883 481 aa13.38□□□□□ -0.27
RTN3-204ENST00000354497 IFIT2P09913 472 aaKnown RBP13.38□□□□□ -0.27
RTN3-204ENST00000354497 CYP2C9P11712 490 aa13.38□□□□□ -0.27
RTN3-204ENST00000354497 ADD2P35612 726 aa13.38□□□□□ -0.27
RTN3-204ENST00000354497 EEPD1Q7L9B9 569 aa13.38□□□□□ -0.27
RTN3-204ENST00000354497 SPOCK2Q92563 424 aa13.38□□□□□ -0.27
RTN3-204ENST00000354497 UIMC1Q96RL1 719 aa13.38□□□□□ -0.27
RTN3-204ENST00000354497 ZMYND15Q9H091 742 aa13.38□□□□□ -0.27
RTN3-204ENST00000354497 MKNK2Q9HBH9 465 aa13.38□□□□□ -0.27
RTN3-204ENST00000354497 C11orf16Q9NQ32 467 aa13.38□□□□□ -0.27
RTN3-204ENST00000354497 PAG1Q9NWQ8 432 aa13.38□□□□□ -0.27
RTN3-204ENST00000354497 CLIP2Q9UDT6 1046 aa13.38□□□□□ -0.27
RTN3-204ENST00000354497 DDX49Q9Y6V7 483 aaKnown RBP13.38□□□□□ -0.27
RTN3-204ENST00000354497 BAZ2AQ9UIF9 1905 aaKnown RBP13.37□□□□□ -0.27
RTN3-204ENST00000354497 ATP2A1O14983 1001 aa13.37□□□□□ -0.27
RTN3-204ENST00000354497 PFKMP08237 780 aa13.37□□□□□ -0.27
RTN3-204ENST00000354497 SMPD1P17405 629 aa13.37□□□□□ -0.27
RTN3-204ENST00000354497 IKQ13123 557 aaPredicted RBP13.37□□□□□ -0.27
RTN3-204ENST00000354497 FAM47CQ5HY64 1035 aa13.37□□□□□ -0.27
RTN3-204ENST00000354497 CEP85Q6P2H3 762 aa13.37□□□□□ -0.27
RTN3-204ENST00000354497 CTR9Q6PD62 1173 aa13.37□□□□□ -0.27
RTN3-204ENST00000354497 FBXO16Q8IX29 292 aaPredicted RBP13.37□□□□□ -0.27
RTN3-204ENST00000354497 CLASRPQ8N2M8 674 aaKnown RBP13.37□□□□□ -0.27
RTN3-204ENST00000354497 RHPN1Q8TCX5 695 aa13.37□□□□□ -0.27
RTN3-204ENST00000354497 CHMP4CQ96CF2 233 aa13.37□□□□□ -0.27
RTN3-204ENST00000354497 AGBL1Q96MI9 1066 aa13.37□□□□□ -0.27
RTN3-204ENST00000354497 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.37□□□□□ -0.27
RTN3-204ENST00000354497 FTOQ9C0B1 505 aaKnown RBP eCLIP13.37□□□□□ -0.27
RTN3-204ENST00000354497 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.37□□□□□ -0.27
RTN3-204ENST00000354497 ALDH8A1Q9H2A2 487 aaPredicted RBP13.37□□□□□ -0.27
RTN3-204ENST00000354497 ACAD9Q9H845 621 aa13.37□□□□□ -0.27
RTN3-204ENST00000354497 SLC38A10Q9HBR0 1119 aa13.37□□□□□ -0.27
RTN3-204ENST00000354497 TRMT13Q9NUP7 481 aaKnown RBP13.37□□□□□ -0.27
RTN3-204ENST00000354497 FEM1BQ9UK73 627 aa13.37□□□□□ -0.27
RTN3-204ENST00000354497 GNEQ9Y223 722 aaKnown RBP13.37□□□□□ -0.27
RTN3-204ENST00000354497 COG6Q9Y2V7 657 aa13.37□□□□□ -0.27
RTN3-204ENST00000354497 ASB14A6NK59 587 aa13.36□□□□□ -0.27
RTN3-204ENST00000354497 KIF28PB7ZC32 967 aa13.36□□□□□ -0.27
RTN3-204ENST00000354497 ARHGEF15O94989 841 aa13.36□□□□□ -0.27
RTN3-204ENST00000354497 CHGBP05060 677 aa13.36□□□□□ -0.27
RTN3-204ENST00000354497 POU3F3P20264 500 aaPredicted RBP13.36□□□□□ -0.27
RTN3-204ENST00000354497 NKX3-2P78367 333 aa13.36□□□□□ -0.27
RTN3-204ENST00000354497 TAP1Q03518 808 aa13.36□□□□□ -0.27
RTN3-204ENST00000354497 GRB10Q13322 594 aa13.36□□□□□ -0.27
RTN3-204ENST00000354497 ZNF579Q8NAF0 562 aaKnown RBP13.36□□□□□ -0.27
RTN3-204ENST00000354497 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.36□□□□□ -0.27
RTN3-204ENST00000354497 SLC9A7Q96T83 725 aa13.36□□□□□ -0.27
RTN3-204ENST00000354497 SEZ6LQ9BYH1 1024 aa13.36□□□□□ -0.27
RTN3-204ENST00000354497 BOLA2Q9H3K6 86 aa13.36□□□□□ -0.27
RTN3-204ENST00000354497 PDGFCQ9NRA1 345 aa13.36□□□□□ -0.27
RTN3-204ENST00000354497 RNF146Q9NTX7 359 aa13.36□□□□□ -0.27
RTN3-204ENST00000354497 NYAP2Q9P242 653 aa13.36□□□□□ -0.27
RTN3-204ENST00000354497 ARPP21Q9UBL0 812 aaPredicted RBP13.36□□□□□ -0.27
RTN3-204ENST00000354497 MYO9BQ13459 2157 aa13.35□□□□□ -0.27
RTN3-204ENST00000354497 TNKSO95271 1327 aa13.35□□□□□ -0.27
RTN3-204ENST00000354497 SOWAHBA6NEL2 793 aa13.35□□□□□ -0.27
RTN3-204ENST00000354497 MINDY4BA8MYZ0 360 aa13.35□□□□□ -0.27
RTN3-204ENST00000354497 MYL3P08590 195 aa13.35□□□□□ -0.27
RTN3-204ENST00000354497 SUPT20HL2P0C7V6 817 aa13.35□□□□□ -0.27
RTN3-204ENST00000354497 FGD1P98174 961 aa13.35□□□□□ -0.27
RTN3-204ENST00000354497 HSP90AB4PQ58FF6 505 aa13.35□□□□□ -0.27
RTN3-204ENST00000354497 TMEM63BQ5T3F8 832 aa13.35□□□□□ -0.27
RTN3-204ENST00000354497 LRRC47Q8N1G4 583 aaKnown RBP13.35□□□□□ -0.27
RTN3-204ENST00000354497 VWCEQ96DN2 955 aa13.35□□□□□ -0.27
RTN3-204ENST00000354497 A1CFQ9NQ94 594 aaKnown RBP13.35□□□□□ -0.27
RTN3-204ENST00000354497 MCM3APO60318 1980 aa13.35□□□□□ -0.27
RTN3-204ENST00000354497 CHD7Q9P2D1 2997 aa13.35□□□□□ -0.27
RTN3-204ENST00000354497 ALAS1P13196 640 aa13.34□□□□□ -0.27
RTN3-204ENST00000354497 RASA1P20936 1047 aa13.34□□□□□ -0.27
RTN3-204ENST00000354497 SSTR3P32745 418 aaPredicted RBP13.34□□□□□ -0.27
RTN3-204ENST00000354497 OAZ1P54368 228 aa13.34□□□□□ -0.27
RTN3-204ENST00000354497 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.34□□□□□ -0.27
RTN3-204ENST00000354497 SPRED2Q7Z698 418 aa13.34□□□□□ -0.27
RTN3-204ENST00000354497 HERC6Q8IVU3 1022 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms