RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 SPATA1Q5VX52 437 aa13.71□□□□□ -0.21
COL6A3-203ENST00000353578 EP400NLQ6ZTU2 488 aa13.71□□□□□ -0.21
COL6A3-203ENST00000353578 DKK3Q9UBP4 350 aa13.71□□□□□ -0.21
COL6A3-203ENST00000353578 ARL2BPQ9Y2Y0 163 aa13.71□□□□□ -0.21
COL6A3-203ENST00000353578 RWDD3Q9Y3V2 267 aa13.71□□□□□ -0.21
COL6A3-203ENST00000353578 UBN2Q6ZU65 1347 aa13.71□□□□□ -0.22
COL6A3-203ENST00000353578 PDE1BQ01064 536 aa13.71□□□□□ -0.22
COL6A3-203ENST00000353578 ANGEL1Q9UNK9 670 aaKnown RBP13.71□□□□□ -0.22
COL6A3-203ENST00000353578 BZW1Q7L1Q6 419 aaKnown RBP13.71□□□□□ -0.22
COL6A3-203ENST00000353578 DZIP3Q86Y13 1208 aaKnown RBP13.71□□□□□ -0.22
COL6A3-203ENST00000353578 MYH9P35579 1960 aaKnown RBP13.71□□□□□ -0.22
COL6A3-203ENST00000353578 C16orf96A6NNT2 1141 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 H0YC42 278 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 INHBAP08476 426 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 KRT7P08729 469 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 S100A5P33763 92 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 ABCD1P33897 745 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 TBCCQ15814 346 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 PDLIM2Q96JY6 352 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 TEX12Q9BXU0 123 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 ATP6V0A4Q9HBG4 840 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 SPDYE3A6NKU9 549 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 POLR2DO15514 142 aaKnown RBP13.7□□□□□ -0.22
COL6A3-203ENST00000353578 ICA1Q05084 483 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 NCAPH2Q6IBW4 605 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 NECAB1Q8N987 351 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 TUBGCP3Q96CW5 907 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 IL15P40933 162 aaPredicted RBP13.7□□□□□ -0.22
COL6A3-203ENST00000353578 SUGP1Q8IWZ8 645 aaKnown RBP13.7□□□□□ -0.22
COL6A3-203ENST00000353578 DTX3LQ8TDB6 740 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 USP33Q8TEY7 942 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 MTBPQ96DY7 904 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 METTL14Q9HCE5 456 aaKnown RBP13.7□□□□□ -0.22
COL6A3-203ENST00000353578 DCDC2Q9UHG0 476 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 UHRF1BP1LA0JNW5 1464 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 IGF1RP08069 1367 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 KCNK3O14649 394 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 DKC1O60832 514 aaKnown RBP eCLIP13.7□□□□□ -0.22
COL6A3-203ENST00000353578 XRCC5P13010 732 aaKnown RBP13.7□□□□□ -0.22
COL6A3-203ENST00000353578 ANKRD42Q8N9B4 389 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 ING2Q9H160 280 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 NDUFA5Q16718 116 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 CLEC17AQ6ZS10 378 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 ZNF277Q9NRM2 450 aaPredicted RBP13.7□□□□□ -0.22
COL6A3-203ENST00000353578 XPO1O14980 1071 aaKnown RBP13.7□□□□□ -0.22
COL6A3-203ENST00000353578 CCDC184Q52MB2 194 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 ABTB2Q8N961 1025 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 RGL1Q9NZL6 768 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 RSPH10B2B2RC85 870 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 RSPH10BP0C881 870 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 TTC1Q99614 292 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 SYNGAP1Q96PV0 1343 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 ARHGDIAP52565 204 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 KIF23Q02241 960 aaPredicted RBP13.7□□□□□ -0.22
COL6A3-203ENST00000353578 CROCCP3Q8IVE0 287 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 MRPS26Q9BYN8 205 aaKnown RBP13.7□□□□□ -0.22
COL6A3-203ENST00000353578 BABAM1Q9NWV8 329 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 TRAF3IP3Q9Y228 551 aa13.7□□□□□ -0.22
COL6A3-203ENST00000353578 CNBD2Q96M20 576 aa13.69□□□□□ -0.22
COL6A3-203ENST00000353578 GOLGA4Q13439 2230 aaKnown RBP13.69□□□□□ -0.22
COL6A3-203ENST00000353578 LAD1O00515 517 aa13.69□□□□□ -0.22
COL6A3-203ENST00000353578 HEXIM1O94992 359 aaKnown RBP13.69□□□□□ -0.22
COL6A3-203ENST00000353578 HSP90AA4PQ58FG1 418 aa13.69□□□□□ -0.22
COL6A3-203ENST00000353578 ANKRD7Q92527 254 aa13.69□□□□□ -0.22
COL6A3-203ENST00000353578 NAPAP54920 295 aa13.69□□□□□ -0.22
COL6A3-203ENST00000353578 ZMYND12Q9H0C1 365 aa13.69□□□□□ -0.22
COL6A3-203ENST00000353578 SYCE1LA8MT33 242 aa13.69□□□□□ -0.22
COL6A3-203ENST00000353578 GALNT17Q6IS24 598 aa13.69□□□□□ -0.22
COL6A3-203ENST00000353578 CNGA3Q16281 694 aa13.69□□□□□ -0.22
COL6A3-203ENST00000353578 ARHGAP44Q17R89 818 aa13.69□□□□□ -0.22
COL6A3-203ENST00000353578 RNF169Q8NCN4 708 aa13.69□□□□□ -0.22
COL6A3-203ENST00000353578 CHMP6Q96FZ7 201 aa13.69□□□□□ -0.22
COL6A3-203ENST00000353578 PAG1Q9NWQ8 432 aa13.69□□□□□ -0.22
COL6A3-203ENST00000353578 PYGLP06737 847 aa13.69□□□□□ -0.22
COL6A3-203ENST00000353578 ENOX1Q8TC92 643 aaKnown RBP13.69□□□□□ -0.22
COL6A3-203ENST00000353578 DYDC2Q96IM9 177 aa13.69□□□□□ -0.22
COL6A3-203ENST00000353578 TRIM31Q9BZY9 425 aa13.69□□□□□ -0.22
COL6A3-203ENST00000353578 STMN3Q9NZ72 180 aa13.69□□□□□ -0.22
COL6A3-203ENST00000353578 IQANK1A0A1B0GTG1 560 aa13.68□□□□□ -0.22
COL6A3-203ENST00000353578 GOLGA8TH3BQL2 631 aa13.68□□□□□ -0.22
COL6A3-203ENST00000353578 GOLGA8HP0CJ92 632 aa13.68□□□□□ -0.22
COL6A3-203ENST00000353578 FLOT2Q14254 428 aa13.68□□□□□ -0.22
COL6A3-203ENST00000353578 SYT2Q8N9I0 419 aaPredicted RBP13.68□□□□□ -0.22
COL6A3-203ENST00000353578 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.68□□□□□ -0.22
COL6A3-203ENST00000353578 MORC3Q14149 939 aa13.68□□□□□ -0.22
COL6A3-203ENST00000353578 EPS8L2Q9H6S3 715 aa13.68□□□□□ -0.22
COL6A3-203ENST00000353578 CCDC22O60826 627 aa13.68□□□□□ -0.22
COL6A3-203ENST00000353578 PYGMP11217 842 aa13.68□□□□□ -0.22
COL6A3-203ENST00000353578 PPP2R2AP63151 447 aa13.68□□□□□ -0.22
COL6A3-203ENST00000353578 MCM10Q7L590 875 aa13.68□□□□□ -0.22
COL6A3-203ENST00000353578 CRLF3Q8IUI8 442 aa13.68□□□□□ -0.22
COL6A3-203ENST00000353578 TDRD9Q8NDG6 1382 aaKnown RBP13.68□□□□□ -0.22
COL6A3-203ENST00000353578 IFT140Q96RY7 1462 aa13.68□□□□□ -0.22
COL6A3-203ENST00000353578 KRT16P08779 473 aa13.68□□□□□ -0.22
COL6A3-203ENST00000353578 PPIP5K2O43314 1243 aa13.68□□□□□ -0.22
COL6A3-203ENST00000353578 ART3Q13508 389 aa13.68□□□□□ -0.22
COL6A3-203ENST00000353578 ATP6V1G3Q96LB4 118 aa13.68□□□□□ -0.22
COL6A3-203ENST00000353578 ATP11BQ9Y2G3 1177 aa13.68□□□□□ -0.22
COL6A3-203ENST00000353578 SAMM50Q9Y512 469 aa13.68□□□□□ -0.22
COL6A3-203ENST00000353578 NVLO15381 856 aaKnown RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms