RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 GABPB1Q06547 395 aaPredicted RBP24.86■■□□□ 1.57
UPF3A-201ENST00000351487 TTI2Q6NXR4 508 aa24.86■■□□□ 1.57
UPF3A-201ENST00000351487 TMC4Q7Z404 712 aa24.86■■□□□ 1.57
UPF3A-201ENST00000351487 DHTKD1Q96HY7 919 aaPredicted RBP24.86■■□□□ 1.57
UPF3A-201ENST00000351487 IRX2Q9BZI1 471 aaPredicted RBP24.86■■□□□ 1.57
UPF3A-201ENST00000351487 RNF225M0QZC1 329 aaPredicted RBP24.86■■□□□ 1.57
UPF3A-201ENST00000351487 PDHBP11177 359 aa24.86■■□□□ 1.57
UPF3A-201ENST00000351487 GABPAQ06546 454 aa24.86■■□□□ 1.57
UPF3A-201ENST00000351487 BMS1Q14692 1282 aaKnown RBP24.86■■□□□ 1.57
UPF3A-201ENST00000351487 REXO1Q8N1G1 1221 aaKnown RBP24.86■■□□□ 1.57
UPF3A-201ENST00000351487 TRIM9Q9C026 710 aa24.86■■□□□ 1.57
UPF3A-201ENST00000351487 ZNF507Q8TCN5 953 aa24.85■■□□□ 1.57
UPF3A-201ENST00000351487 PLIN2Q99541 437 aa24.85■■□□□ 1.57
UPF3A-201ENST00000351487 C7orf25Q9BPX7 421 aa24.85■■□□□ 1.57
UPF3A-201ENST00000351487 SUGT1Q9Y2Z0 365 aa24.85■■□□□ 1.57
UPF3A-201ENST00000351487 USP17L5A8MUK1 530 aa24.85■■□□□ 1.57
UPF3A-201ENST00000351487 DDR1Q08345 913 aa24.85■■□□□ 1.57
UPF3A-201ENST00000351487 GPR161Q8N6U8 529 aaKnown RBP24.85■■□□□ 1.57
UPF3A-201ENST00000351487 MB21D1Q8N884 522 aa24.85■■□□□ 1.57
UPF3A-201ENST00000351487 TBCKQ8TEA7 893 aa24.85■■□□□ 1.57
UPF3A-201ENST00000351487 TRIM47Q96LD4 638 aa24.85■■□□□ 1.57
UPF3A-201ENST00000351487 MTMR4Q9NYA4 1195 aa24.85■■□□□ 1.57
UPF3A-201ENST00000351487 A0A0U1RQJ8 604 aa24.84■■□□□ 1.57
UPF3A-201ENST00000351487 ZRANB2O95218 330 aaKnown RBP eCLIP24.84■■□□□ 1.57
UPF3A-201ENST00000351487 KRT9P35527 623 aa24.84■■□□□ 1.57
UPF3A-201ENST00000351487 PPP1R2P41236 205 aa24.84■■□□□ 1.57
UPF3A-201ENST00000351487 ASPRV1Q53RT3 343 aa24.84■■□□□ 1.57
UPF3A-201ENST00000351487 ATRIPQ8WXE1 791 aa24.84■■□□□ 1.57
UPF3A-201ENST00000351487 CCDC47Q96A33 483 aaKnown RBP24.84■■□□□ 1.57
UPF3A-201ENST00000351487 SNHG28P0DPA3 235 aa24.84■■□□□ 1.57
UPF3A-201ENST00000351487 SLC27A3Q5K4L6 730 aa24.84■■□□□ 1.57
UPF3A-201ENST00000351487 FHOD1Q9Y613 1164 aa24.84■■□□□ 1.57
UPF3A-201ENST00000351487 IGKV6D-41A0A0C4DH26 115 aa24.83■■□□□ 1.57
UPF3A-201ENST00000351487 C6orf229H3BNL8 230 aa24.83■■□□□ 1.57
UPF3A-201ENST00000351487 TUBB2AQ13885 445 aa24.83■■□□□ 1.57
UPF3A-201ENST00000351487 ACRBPQ8NEB7 543 aa24.83■■□□□ 1.57
UPF3A-201ENST00000351487 RABGGTAQ92696 567 aa24.83■■□□□ 1.57
UPF3A-201ENST00000351487 MMTAG2Q9BU76 263 aaKnown RBP24.83■■□□□ 1.57
UPF3A-201ENST00000351487 TUBB2BQ9BVA1 445 aa24.83■■□□□ 1.57
UPF3A-201ENST00000351487 ANKRD31Q8N7Z5 1873 aa24.83■■□□□ 1.57
UPF3A-201ENST00000351487 POLRMTO00411 1230 aaKnown RBP24.82■■□□□ 1.56
UPF3A-201ENST00000351487 COBLL1Q53SF7 1204 aa24.82■■□□□ 1.56
UPF3A-201ENST00000351487 TMCO3Q6UWJ1 677 aa24.82■■□□□ 1.56
UPF3A-201ENST00000351487 CREBRFQ8IUR6 639 aa24.82■■□□□ 1.56
UPF3A-201ENST00000351487 MYO1AQ9UBC5 1043 aa24.82■■□□□ 1.56
UPF3A-201ENST00000351487 PRDM4Q9UKN5 801 aa24.82■■□□□ 1.56
UPF3A-201ENST00000351487 GREB1LQ9C091 1923 aaPredicted RBP24.82■■□□□ 1.56
UPF3A-201ENST00000351487 MYO3BQ8WXR4 1341 aa24.82■■□□□ 1.56
UPF3A-201ENST00000351487 BICDL2A1A5D9 508 aa24.82■■□□□ 1.56
UPF3A-201ENST00000351487 CCNE1P24864 410 aa24.82■■□□□ 1.56
UPF3A-201ENST00000351487 SP8Q8IXZ3 490 aa24.82■■□□□ 1.56
UPF3A-201ENST00000351487 SEPT12Q8IYM1 358 aa24.82■■□□□ 1.56
UPF3A-201ENST00000351487 DUSP9Q99956 384 aaKnown RBP24.82■■□□□ 1.56
UPF3A-201ENST00000351487 UBA5Q9GZZ9 404 aa24.82■■□□□ 1.56
UPF3A-201ENST00000351487 VAT1LQ9HCJ6 419 aa24.82■■□□□ 1.56
UPF3A-201ENST00000351487 EXOC1Q9NV70 894 aa24.82■■□□□ 1.56
UPF3A-201ENST00000351487 MAGEC2Q9UBF1 373 aaPredicted RBP24.82■■□□□ 1.56
UPF3A-201ENST00000351487 GTF2IP78347 998 aa24.81■■□□□ 1.56
UPF3A-201ENST00000351487 AMPD3Q01432 767 aa24.81■■□□□ 1.56
UPF3A-201ENST00000351487 GOLGA1Q92805 767 aa24.81■■□□□ 1.56
UPF3A-201ENST00000351487 P2RX5Q93086 422 aa24.81■■□□□ 1.56
UPF3A-201ENST00000351487 MTMR9Q96QG7 549 aa24.81■■□□□ 1.56
UPF3A-201ENST00000351487 DNAJC7Q99615 494 aa24.81■■□□□ 1.56
UPF3A-201ENST00000351487 COA1Q9GZY4 146 aa24.81■■□□□ 1.56
UPF3A-201ENST00000351487 BIN2Q9UBW5 565 aaPredicted RBP24.81■■□□□ 1.56
UPF3A-201ENST00000351487 PNMA6AP0CW24 399 aaPredicted RBP24.81■■□□□ 1.56
UPF3A-201ENST00000351487 TECP42680 631 aa24.81■■□□□ 1.56
UPF3A-201ENST00000351487 DNM2P50570 870 aa24.81■■□□□ 1.56
UPF3A-201ENST00000351487 JAKMIP3Q5VZ66 844 aa24.81■■□□□ 1.56
UPF3A-201ENST00000351487 POTEDQ86YR6 584 aa24.81■■□□□ 1.56
UPF3A-201ENST00000351487 TTC26A0AVF1 554 aa24.8■■□□□ 1.56
UPF3A-201ENST00000351487 ARHGAP25P42331 645 aa24.8■■□□□ 1.56
UPF3A-201ENST00000351487 PDE4DQ08499 809 aa24.8■■□□□ 1.56
UPF3A-201ENST00000351487 ZNF569Q5MCW4 686 aa24.8■■□□□ 1.56
UPF3A-201ENST00000351487 OR8K1Q8NGG5 319 aa24.8■■□□□ 1.56
UPF3A-201ENST00000351487 CDC23Q9UJX2 597 aa24.8■■□□□ 1.56
UPF3A-201ENST00000351487 CAPN11Q9UMQ6 739 aa24.8■■□□□ 1.56
UPF3A-201ENST00000351487 FRMPD2Q68DX3 1309 aaPredicted RBP24.8■■□□□ 1.56
UPF3A-201ENST00000351487 PPEF1O14829 653 aaPredicted RBP24.8■■□□□ 1.56
UPF3A-201ENST00000351487 FXR2P51116 673 aaKnown RBP eCLIP24.8■■□□□ 1.56
UPF3A-201ENST00000351487 ASIC1P78348 528 aa24.8■■□□□ 1.56
UPF3A-201ENST00000351487 TEX35Q5T0J7 233 aa24.8■■□□□ 1.56
UPF3A-201ENST00000351487 CSGALNACT2Q8N6G5 542 aa24.8■■□□□ 1.56
UPF3A-201ENST00000351487 CALML4Q96GE6 196 aa24.8■■□□□ 1.56
UPF3A-201ENST00000351487 SRGNP10124 158 aa24.79■■□□□ 1.56
UPF3A-201ENST00000351487 ADCY7P51828 1080 aa24.79■■□□□ 1.56
UPF3A-201ENST00000351487 PPP1R18Q6NYC8 613 aa24.79■■□□□ 1.56
UPF3A-201ENST00000351487 SRGAP1Q7Z6B7 1085 aa24.79■■□□□ 1.56
UPF3A-201ENST00000351487 TMEM260Q9NX78 707 aa24.79■■□□□ 1.56
UPF3A-201ENST00000351487 STK17AQ9UEE5 414 aa24.79■■□□□ 1.56
UPF3A-201ENST00000351487 ATP8B1O43520 1251 aa24.78■■□□□ 1.56
UPF3A-201ENST00000351487 AKR1B1P15121 316 aa24.78■■□□□ 1.56
UPF3A-201ENST00000351487 FAM114A1Q8IWE2 563 aa24.78■■□□□ 1.56
UPF3A-201ENST00000351487 LUC7L2Q9Y383 392 aaKnown RBP24.78■■□□□ 1.56
UPF3A-201ENST00000351487 AFF2P51816 1311 aa24.78■■□□□ 1.56
UPF3A-201ENST00000351487 CTAGE9A4FU28 777 aa24.78■■□□□ 1.56
UPF3A-201ENST00000351487 STK4Q13043 487 aa24.78■■□□□ 1.56
UPF3A-201ENST00000351487 PICALMQ13492 652 aa24.78■■□□□ 1.56
UPF3A-201ENST00000351487 CNNM4Q6P4Q7 775 aa24.78■■□□□ 1.56
UPF3A-201ENST00000351487 LRRC47Q8N1G4 583 aaKnown RBP24.78■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms