RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 BICC1Q9H694 974 aaKnown RBP9.38□□□□□ -0.91
HMGB1-203ENST00000341423 RUBCNLQ9H714 662 aa9.38□□□□□ -0.91
HMGB1-203ENST00000341423 BRD1O95696 1058 aa9.38□□□□□ -0.91
HMGB1-203ENST00000341423 LIG4P49917 911 aa9.38□□□□□ -0.91
HMGB1-203ENST00000341423 PPATQ06203 517 aa9.38□□□□□ -0.91
HMGB1-203ENST00000341423 OSBPL5Q9H0X9 879 aaPredicted RBP9.38□□□□□ -0.91
HMGB1-203ENST00000341423 RNASEH1O60930 286 aaKnown RBP9.38□□□□□ -0.91
HMGB1-203ENST00000341423 PSAPP07602 524 aa9.38□□□□□ -0.91
HMGB1-203ENST00000341423 ZAP70P43403 619 aa9.38□□□□□ -0.91
HMGB1-203ENST00000341423 HMGN5P82970 282 aaKnown RBP9.38□□□□□ -0.91
HMGB1-203ENST00000341423 CUL4BQ13620 913 aa9.38□□□□□ -0.91
HMGB1-203ENST00000341423 PRPF38BQ5VTL8 546 aaKnown RBP9.38□□□□□ -0.91
HMGB1-203ENST00000341423 MAEAQ7L5Y9 396 aa9.38□□□□□ -0.91
HMGB1-203ENST00000341423 CEP170BQ9Y4F5 1589 aaPredicted RBP9.38□□□□□ -0.91
HMGB1-203ENST00000341423 DLL1O00548 723 aa9.38□□□□□ -0.91
HMGB1-203ENST00000341423 ALDH1A3P47895 512 aa9.38□□□□□ -0.91
HMGB1-203ENST00000341423 DDX53Q86TM3 631 aaKnown RBP9.38□□□□□ -0.91
HMGB1-203ENST00000341423 PANK1Q8TE04 598 aa9.38□□□□□ -0.91
HMGB1-203ENST00000341423 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.38□□□□□ -0.912e-7■■■■□ 22.6
HMGB1-203ENST00000341423 TRAF3IP1Q8TDR0 691 aaPredicted RBP9.37□□□□□ -0.91
HMGB1-203ENST00000341423 RAVER2Q9HCJ3 691 aaKnown RBP9.37□□□□□ -0.91
HMGB1-203ENST00000341423 AGLP35573 1532 aa9.37□□□□□ -0.91
HMGB1-203ENST00000341423 ATP7BP35670 1465 aa9.37□□□□□ -0.91
HMGB1-203ENST00000341423 SYNCRIPO60506 623 aaKnown RBP9.37□□□□□ -0.91
HMGB1-203ENST00000341423 PARNO95453 639 aaKnown RBP9.37□□□□□ -0.91
HMGB1-203ENST00000341423 EIF2AK2P19525 551 aaKnown RBP9.37□□□□□ -0.91
HMGB1-203ENST00000341423 SYDE2Q5VT97 1194 aa9.37□□□□□ -0.91
HMGB1-203ENST00000341423 RPGRIP1Q96KN7 1286 aa9.37□□□□□ -0.91
HMGB1-203ENST00000341423 MTG1Q9BT17 334 aaPredicted RBP9.37□□□□□ -0.91
HMGB1-203ENST00000341423 STRIP2Q9ULQ0 834 aa9.37□□□□□ -0.91
HMGB1-203ENST00000341423 ZNF233A6NK53 670 aa9.37□□□□□ -0.91
HMGB1-203ENST00000341423 ALADP13716 330 aa9.37□□□□□ -0.91
HMGB1-203ENST00000341423 PPFIA1Q13136 1202 aa9.37□□□□□ -0.91
HMGB1-203ENST00000341423 TAF1BQ53T94 588 aaPredicted RBP9.37□□□□□ -0.91
HMGB1-203ENST00000341423 GOLGA6L1Q8N7Z2 621 aa9.37□□□□□ -0.91
HMGB1-203ENST00000341423 CACTINQ8WUQ7 758 aaKnown RBP9.37□□□□□ -0.91
HMGB1-203ENST00000341423 C1QTNF1Q9BXJ1 281 aa9.37□□□□□ -0.91
HMGB1-203ENST00000341423 PSTPIP2Q9H939 334 aa9.37□□□□□ -0.91
HMGB1-203ENST00000341423 PDE8BO95263 885 aa9.37□□□□□ -0.91
HMGB1-203ENST00000341423 PHKA2P46019 1235 aa9.37□□□□□ -0.91
HMGB1-203ENST00000341423 IFNAR2P48551 515 aa9.37□□□□□ -0.91
HMGB1-203ENST00000341423 FAM102BQ5T8I3 360 aa9.37□□□□□ -0.91
HMGB1-203ENST00000341423 CCDC89Q8N998 374 aa9.37□□□□□ -0.91
HMGB1-203ENST00000341423 RABGGTAQ92696 567 aa9.37□□□□□ -0.91
HMGB1-203ENST00000341423 PPP1R16BQ96T49 567 aa9.37□□□□□ -0.91
HMGB1-203ENST00000341423 PHLPP2Q6ZVD8 1323 aa9.36□□□□□ -0.91
HMGB1-203ENST00000341423 ZCCHC11Q5TAX3 1644 aaKnown RBP9.36□□□□□ -0.91
HMGB1-203ENST00000341423 C17orf102A2RUQ5 167 aa9.36□□□□□ -0.91
HMGB1-203ENST00000341423 NCK2O43639 380 aa9.36□□□□□ -0.91
HMGB1-203ENST00000341423 ELF2Q15723 593 aa9.36□□□□□ -0.91
HMGB1-203ENST00000341423 CABP7Q86V35 215 aa9.36□□□□□ -0.91
HMGB1-203ENST00000341423 SCN4BQ8IWT1 228 aa9.36□□□□□ -0.91
HMGB1-203ENST00000341423 MFSD14AQ96MC6 490 aa9.36□□□□□ -0.91
HMGB1-203ENST00000341423 RMDN3Q96TC7 470 aa9.36□□□□□ -0.91
HMGB1-203ENST00000341423 PFASO15067 1338 aa9.36□□□□□ -0.91
HMGB1-203ENST00000341423 CCDC175P0C221 793 aa9.36□□□□□ -0.91
HMGB1-203ENST00000341423 BYSLQ13895 437 aaKnown RBP9.36□□□□□ -0.91
HMGB1-203ENST00000341423 HHIPL2Q6UWX4 724 aa9.36□□□□□ -0.91
HMGB1-203ENST00000341423 DEFB123Q8N688 67 aa9.36□□□□□ -0.91
HMGB1-203ENST00000341423 CLDND1Q9NY35 253 aa9.36□□□□□ -0.91
HMGB1-203ENST00000341423 CFAP65Q6ZU64 1925 aaKnown RBP9.36□□□□□ -0.91
HMGB1-203ENST00000341423 USO1O60763 962 aaKnown RBP9.36□□□□□ -0.91
HMGB1-203ENST00000341423 SRGNP10124 158 aa9.36□□□□□ -0.91
HMGB1-203ENST00000341423 SP100P23497 879 aaPredicted RBP9.36□□□□□ -0.91
HMGB1-203ENST00000341423 HTRA3P83110 453 aa9.36□□□□□ -0.91
HMGB1-203ENST00000341423 PPIL2Q13356 520 aa9.36□□□□□ -0.91
HMGB1-203ENST00000341423 TIGD5Q53EQ6 642 aa9.36□□□□□ -0.91
HMGB1-203ENST00000341423 MUM1L1Q5H9M0 696 aa9.36□□□□□ -0.91
HMGB1-203ENST00000341423 RHPN1Q8TCX5 695 aa9.36□□□□□ -0.91
HMGB1-203ENST00000341423 PALD1Q9ULE6 856 aa9.36□□□□□ -0.91
HMGB1-203ENST00000341423 RPL13P26373 211 aaKnown RBP9.36□□□□□ -0.91
HMGB1-203ENST00000341423 TADA2BQ86TJ2 420 aa9.36□□□□□ -0.91
HMGB1-203ENST00000341423 CTNNBL1Q8WYA6 563 aaPredicted RBP9.36□□□□□ -0.91
HMGB1-203ENST00000341423 WNK4Q96J92 1243 aa9.36□□□□□ -0.91
HMGB1-203ENST00000341423 NLRP4Q96MN2 994 aa9.36□□□□□ -0.91
HMGB1-203ENST00000341423 TTC25Q96NG3 672 aa9.36□□□□□ -0.91
HMGB1-203ENST00000341423 SERPINA10Q9UK55 444 aa9.36□□□□□ -0.91
HMGB1-203ENST00000341423 COPB1P53618 953 aaKnown RBP9.35□□□□□ -0.91
HMGB1-203ENST00000341423 EIF4A1P60842 406 aaKnown RBP9.35□□□□□ -0.91
HMGB1-203ENST00000341423 TNNC1P63316 161 aa9.35□□□□□ -0.91
HMGB1-203ENST00000341423 LETM2Q2VYF4 491 aa9.35□□□□□ -0.91
HMGB1-203ENST00000341423 ARMCX2Q7L311 632 aa9.35□□□□□ -0.91
HMGB1-203ENST00000341423 CHST13Q8NET6 341 aa9.35□□□□□ -0.91
HMGB1-203ENST00000341423 ZNF397Q8NF99 534 aaPredicted RBP9.35□□□□□ -0.91
HMGB1-203ENST00000341423 ZNF830Q96NB3 372 aaPredicted RBP9.35□□□□□ -0.91
HMGB1-203ENST00000341423 TFIP11Q9UBB9 837 aaKnown RBP9.35□□□□□ -0.91
HMGB1-203ENST00000341423 FRMD4BQ9Y2L6 1034 aa9.35□□□□□ -0.91
HMGB1-203ENST00000341423 ADGRB2O60241 1585 aa9.35□□□□□ -0.91
HMGB1-203ENST00000341423 PRMT3O60678 531 aa9.35□□□□□ -0.91
HMGB1-203ENST00000341423 ELOAQ14241 798 aaKnown RBP9.35□□□□□ -0.91
HMGB1-203ENST00000341423 DIXDC1Q155Q3 683 aa9.35□□□□□ -0.91
HMGB1-203ENST00000341423 IPO4Q8TEX9 1081 aaKnown RBP9.35□□□□□ -0.91
HMGB1-203ENST00000341423 HSFX4A0A1B0GTS1 333 aaPredicted RBP9.35□□□□□ -0.91
HMGB1-203ENST00000341423 HSFX3A0A1B0GWH4 333 aaPredicted RBP9.35□□□□□ -0.91
HMGB1-203ENST00000341423 RRN3P2A6NIE6 340 aa9.35□□□□□ -0.91
HMGB1-203ENST00000341423 WDR46O15213 610 aaKnown RBP9.35□□□□□ -0.91
HMGB1-203ENST00000341423 DNA2P51530 1060 aa9.35□□□□□ -0.91
HMGB1-203ENST00000341423 EXOC1Q9NV70 894 aa9.35□□□□□ -0.91
HMGB1-203ENST00000341423 CCL5P13501 91 aa9.35□□□□□ -0.91
HMGB1-203ENST00000341423 TMED8Q6PL24 325 aaPredicted RBP9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms