RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 FAM89AQ96GI7 184 aa11.27□□□□□ -0.6
CCDC88A-202ENST00000336838 KRT15P19012 456 aa11.27□□□□□ -0.61
CCDC88A-202ENST00000336838 MUM1Q2TAK8 710 aa11.27□□□□□ -0.61
CCDC88A-202ENST00000336838 SDCCAG8Q86SQ7 713 aaPredicted RBP11.27□□□□□ -0.61
CCDC88A-202ENST00000336838 FAM207AQ9NSI2 230 aaPredicted RBP11.27□□□□□ -0.61
CCDC88A-202ENST00000336838 DCUN1D2Q6PH85 259 aa11.27□□□□□ -0.61
CCDC88A-202ENST00000336838 PKP1Q13835 747 aa11.27□□□□□ -0.61
CCDC88A-202ENST00000336838 TERF2Q15554 542 aa11.27□□□□□ -0.61
CCDC88A-202ENST00000336838 ARHGEF18Q6ZSZ5 1173 aa11.27□□□□□ -0.61
CCDC88A-202ENST00000336838 PLEKHG2Q9H7P9 1386 aa11.27□□□□□ -0.61
CCDC88A-202ENST00000336838 MAGEA9P43362 315 aa11.27□□□□□ -0.61
CCDC88A-202ENST00000336838 PNMA8AQ86V59 439 aaPredicted RBP11.27□□□□□ -0.61
CCDC88A-202ENST00000336838 LMNAP02545 664 aaKnown RBP11.27□□□□□ -0.61
CCDC88A-202ENST00000336838 PNMA6AP0CW24 399 aaPredicted RBP11.27□□□□□ -0.61
CCDC88A-202ENST00000336838 ANXA13P27216 316 aa11.27□□□□□ -0.61
CCDC88A-202ENST00000336838 LRMPQ12912 555 aa11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 EXOC8Q8IYI6 725 aa11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 IFT122Q9HBG6 1241 aa11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 VPS54Q9P1Q0 977 aa11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 SUPT20HQ8NEM7 779 aa11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 CCDC87Q9NVE4 849 aa11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 USP42Q9H9J4 1324 aaKnown RBP11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 GRID2IPA4D2P6 1211 aa11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 RFX1P22670 979 aa11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 PDE6CP51160 858 aa11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 NCOA3Q9Y6Q9 1424 aa11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 SMIM23A6NLE4 172 aa11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 H2AFZP0C0S5 128 aa11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 ZNF131P52739 623 aa11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 H2AFVQ71UI9 128 aa11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 KCNK3O14649 394 aa11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 TXKP42681 527 aa11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 NECTIN1Q15223 517 aa11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 RBBP5Q15291 538 aaKnown RBP11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 MYCT1Q8N699 235 aa11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 VIPAS39Q9H9C1 493 aa11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 PCDHA4Q9UN74 947 aa11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 SMCO2A6NFE2 343 aa11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 POLR2BP30876 1174 aaKnown RBP11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 PTGDRQ13258 359 aa11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 CCDC125Q86Z20 511 aa11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 KRT12Q99456 494 aa11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 RESTQ13127 1097 aa11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 PDZD4Q76G19 769 aaPredicted RBP11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 CACTINQ8WUQ7 758 aaKnown RBP11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 TNKSO95271 1327 aa11.26□□□□□ -0.61
CCDC88A-202ENST00000336838 ZAP70P43403 619 aa11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 CAV1Q03135 178 aa11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 PICALMQ13492 652 aa11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 PFDN4Q9NQP4 134 aa11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 PSMC4P43686 418 aa11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 ADCY2Q08462 1091 aa11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 PANK4Q9NVE7 773 aa11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 ERCC3P19447 782 aa11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 KIF23Q02241 960 aaPredicted RBP11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 GPBP1Q86WP2 473 aa11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 ELOA2Q8IYF1 753 aaPredicted RBP11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 JARID2Q92833 1246 aaPredicted RBP11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 CNOT6LQ96LI5 555 aaKnown RBP11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 C1orf112Q9NSG2 853 aa11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 GIPC1O14908 333 aa11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 CLCN6P51797 869 aa11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 CHRNA2Q15822 529 aa11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 RNF168Q8IYW5 571 aaPredicted RBP11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 LARP4BQ92615 738 aaKnown RBP11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 CSRNP1Q96S65 589 aa11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 PYCARDQ9ULZ3 195 aa11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 PCDHA12Q9UN75 941 aa11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 PRPF3O43395 683 aaKnown RBP11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 TBC1D8O95759 1140 aa11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 DPCR1Q3MIW9 517 aa11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 DDX25Q9UHL0 483 aaKnown RBP11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 SYNGAP1Q96PV0 1343 aa11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 CASP14P31944 242 aa11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 P2RX5Q93086 422 aa11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 VEZTQ9HBM0 779 aa11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 TRPC6Q9Y210 931 aa11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 OVOS2A0A0G2JMS6 1433 aa11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 BAZ2BQ9UIF8 2168 aaKnown RBP11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 IBSPP21815 317 aaPredicted RBP11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 ARHGAP4P98171 946 aa11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 ZNF496Q96IT1 587 aaPredicted RBP11.25□□□□□ -0.61
CCDC88A-202ENST00000336838 PDE8BO95263 885 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 FGFR1OP2Q9NVK5 253 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 PCDHA5Q9Y5H7 936 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 MORC2Q9Y6X9 1032 aaPredicted RBP11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 GAS7O60861 476 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 PHKG2P15735 406 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 DMP1Q13316 513 aaPredicted RBP11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 EXOC3L4Q17RC7 722 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 IL17REQ8NFR9 667 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 CHURC1Q8WUH1 139 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 DESI2Q9BSY9 194 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 MAP3K15Q6ZN16 1313 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 IPO5O00410 1097 aaKnown RBP11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 SERPING1P05155 500 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 DRC3Q9H069 523 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 RAB20Q9NX57 234 aa11.24□□□□□ -0.61
CCDC88A-202ENST00000336838 HSPA8P11142 646 aaKnown RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms