RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 MUM1L1Q5H9M0 696 aa17.7■□□□□ 0.42
PDLIM5-202ENST00000318007 TMEM260Q9NX78 707 aa17.7■□□□□ 0.42
PDLIM5-202ENST00000318007 TAF1CQ15572 869 aaPredicted RBP17.7■□□□□ 0.42
PDLIM5-202ENST00000318007 JAKMIP3Q5VZ66 844 aa17.7■□□□□ 0.42
PDLIM5-202ENST00000318007 ANKRD23Q86SG2 305 aa17.7■□□□□ 0.42
PDLIM5-202ENST00000318007 IFNL1Q8IU54 200 aa17.7■□□□□ 0.42
PDLIM5-202ENST00000318007 REPS2Q8NFH8 660 aa17.7■□□□□ 0.42
PDLIM5-202ENST00000318007 PNMA3Q9UL41 463 aa17.7■□□□□ 0.42
PDLIM5-202ENST00000318007 WDR33Q9C0J8 1336 aaKnown RBP17.69■□□□□ 0.42
PDLIM5-202ENST00000318007 BRD1O95696 1058 aa17.69■□□□□ 0.42
PDLIM5-202ENST00000318007 ATP2B1P20020 1258 aa17.69■□□□□ 0.42
PDLIM5-202ENST00000318007 VEGFBP49765 207 aa17.69■□□□□ 0.42
PDLIM5-202ENST00000318007 SAFBQ15424 915 aaKnown RBP eCLIP17.69■□□□□ 0.42
PDLIM5-202ENST00000318007 NPY5RQ15761 445 aa17.69■□□□□ 0.42
PDLIM5-202ENST00000318007 Q3C1V9 767 aa17.69■□□□□ 0.42
PDLIM5-202ENST00000318007 TPRNQ4KMQ1 711 aa17.69■□□□□ 0.42
PDLIM5-202ENST00000318007 EARS2Q5JPH6 523 aaKnown RBP17.69■□□□□ 0.42
PDLIM5-202ENST00000318007 LBX2Q6XYB7 198 aa17.69■□□□□ 0.42
PDLIM5-202ENST00000318007 NCAPG2Q86XI2 1143 aa17.69■□□□□ 0.42
PDLIM5-202ENST00000318007 CCDC148Q8NFR7 591 aa17.69■□□□□ 0.42
PDLIM5-202ENST00000318007 TRERF1Q96PN7 1200 aa17.69■□□□□ 0.42
PDLIM5-202ENST00000318007 CPA4Q9UI42 421 aa17.69■□□□□ 0.42
PDLIM5-202ENST00000318007 F13A1P00488 732 aa17.68■□□□□ 0.42
PDLIM5-202ENST00000318007 KRT2P35908 639 aa17.68■□□□□ 0.42
PDLIM5-202ENST00000318007 STAT3P40763 770 aa17.68■□□□□ 0.42
PDLIM5-202ENST00000318007 ADCY7P51828 1080 aa17.68■□□□□ 0.42
PDLIM5-202ENST00000318007 NUCB2P80303 420 aa17.68■□□□□ 0.42
PDLIM5-202ENST00000318007 HHIPL1Q96JK4 782 aa17.68■□□□□ 0.42
PDLIM5-202ENST00000318007 PSTPIP2Q9H939 334 aa17.68■□□□□ 0.42
PDLIM5-202ENST00000318007 RBPJLQ9UBG7 517 aa17.68■□□□□ 0.42
PDLIM5-202ENST00000318007 BRCA2P51587 3418 aa17.68■□□□□ 0.42
PDLIM5-202ENST00000318007 OPLAHO14841 1288 aa17.68■□□□□ 0.42
PDLIM5-202ENST00000318007 CNMDO75829 334 aa17.68■□□□□ 0.42
PDLIM5-202ENST00000318007 CEBPZQ03701 1054 aaKnown RBP17.68■□□□□ 0.42
PDLIM5-202ENST00000318007 SREBF2Q12772 1141 aa17.68■□□□□ 0.42
PDLIM5-202ENST00000318007 NOGQ13253 232 aa17.68■□□□□ 0.42
PDLIM5-202ENST00000318007 NSMFQ6X4W1 530 aa17.68■□□□□ 0.42
PDLIM5-202ENST00000318007 CCDC12Q8WUD4 166 aaPredicted RBP17.68■□□□□ 0.42
PDLIM5-202ENST00000318007 PARK7Q99497 189 aaKnown RBP17.68■□□□□ 0.42
PDLIM5-202ENST00000318007 TEX13BQ9BXU2 312 aa17.68■□□□□ 0.42
PDLIM5-202ENST00000318007 C6orf50Q9HD87 102 aa17.68■□□□□ 0.42
PDLIM5-202ENST00000318007 RNF146Q9NTX7 359 aa17.68■□□□□ 0.42
PDLIM5-202ENST00000318007 PCDHA4Q9UN74 947 aa17.68■□□□□ 0.42
PDLIM5-202ENST00000318007 ADAMTS5Q9UNA0 930 aa17.68■□□□□ 0.42
PDLIM5-202ENST00000318007 NBR1Q14596 966 aa17.67■□□□□ 0.42
PDLIM5-202ENST00000318007 PIK3AP1Q6ZUJ8 805 aa17.67■□□□□ 0.42
PDLIM5-202ENST00000318007 FCHSD1Q86WN1 690 aa17.67■□□□□ 0.42
PDLIM5-202ENST00000318007 BLIDQ8IZY5 108 aa17.67■□□□□ 0.42
PDLIM5-202ENST00000318007 CUL5Q93034 780 aa17.67■□□□□ 0.42
PDLIM5-202ENST00000318007 PURBQ96QR8 312 aaKnown RBP17.67■□□□□ 0.42
PDLIM5-202ENST00000318007 FTOQ9C0B1 505 aaKnown RBP eCLIP17.67■□□□□ 0.42
PDLIM5-202ENST00000318007 SPATC1LQ9H0A9 340 aa17.67■□□□□ 0.42
PDLIM5-202ENST00000318007 ZMYND12Q9H0C1 365 aa17.67■□□□□ 0.42
PDLIM5-202ENST00000318007 BRMS1Q9HCU9 246 aa17.67■□□□□ 0.42
PDLIM5-202ENST00000318007 NCLP19338 710 aaKnown RBP17.66■□□□□ 0.42
PDLIM5-202ENST00000318007 TNPO1Q92973 898 aaKnown RBP17.66■□□□□ 0.42
PDLIM5-202ENST00000318007 SH3GLB2Q9NR46 395 aa17.66■□□□□ 0.42
PDLIM5-202ENST00000318007 TESPA1A2RU30 521 aaPredicted RBP17.66■□□□□ 0.42
PDLIM5-202ENST00000318007 CALML3P27482 149 aa17.66■□□□□ 0.42
PDLIM5-202ENST00000318007 UBXN2AP68543 259 aa17.66■□□□□ 0.42
PDLIM5-202ENST00000318007 RESTQ13127 1097 aa17.66■□□□□ 0.42
PDLIM5-202ENST00000318007 CRHR2Q13324 411 aa17.66■□□□□ 0.42
PDLIM5-202ENST00000318007 REXO1Q8N1G1 1221 aaKnown RBP17.66■□□□□ 0.42
PDLIM5-202ENST00000318007 MOV10L1Q9BXT6 1211 aaKnown RBP17.66■□□□□ 0.42
PDLIM5-202ENST00000318007 PORCNQ9H237 461 aa17.66■□□□□ 0.42
PDLIM5-202ENST00000318007 CIZ1Q9ULV3 898 aaPredicted RBP17.66■□□□□ 0.42
PDLIM5-202ENST00000318007 MYPNQ86TC9 1320 aa17.65■□□□□ 0.42
PDLIM5-202ENST00000318007 hCG_1984214I3L0E3 225 aa17.65■□□□□ 0.42
PDLIM5-202ENST00000318007 ERCC3P19447 782 aa17.65■□□□□ 0.42
PDLIM5-202ENST00000318007 GNA11P29992 359 aa17.65■□□□□ 0.42
PDLIM5-202ENST00000318007 ERVK-9P63128 1117 aa17.65■□□□□ 0.42
PDLIM5-202ENST00000318007 ERVK-24P63145 666 aa17.65■□□□□ 0.42
PDLIM5-202ENST00000318007 ZNF713Q8N859 430 aaPredicted RBP17.65■□□□□ 0.42
PDLIM5-202ENST00000318007 ZFP91Q96JP5 570 aaPredicted RBP17.65■□□□□ 0.42
PDLIM5-202ENST00000318007 EFCC1Q9HA90 598 aa17.65■□□□□ 0.42
PDLIM5-202ENST00000318007 PCDHA6Q9UN73 950 aa17.65■□□□□ 0.42
PDLIM5-202ENST00000318007 MRPL11Q9Y3B7 192 aaKnown RBP17.65■□□□□ 0.42
PDLIM5-202ENST00000318007 PCDHA8Q9Y5H6 950 aa17.65■□□□□ 0.42
PDLIM5-202ENST00000318007 DDX49Q9Y6V7 483 aaKnown RBP17.65■□□□□ 0.42
PDLIM5-202ENST00000318007 A0A0G2JMZ2 1700 aa17.65■□□□□ 0.42
PDLIM5-202ENST00000318007 C1QTNF8P60827 252 aa17.64■□□□□ 0.41
PDLIM5-202ENST00000318007 SLC30A10Q6XR72 485 aa17.64■□□□□ 0.41
PDLIM5-202ENST00000318007 NOSTRINQ8IVI9 506 aa17.64■□□□□ 0.41
PDLIM5-202ENST00000318007 CLEC4DQ8WXI8 215 aa17.64■□□□□ 0.41
PDLIM5-202ENST00000318007 GDPD2Q9HCC8 539 aa17.64■□□□□ 0.41
PDLIM5-202ENST00000318007 RIC8AQ9NPQ8 531 aa17.64■□□□□ 0.41
PDLIM5-202ENST00000318007 ABCB11O95342 1321 aa17.64■□□□□ 0.41
PDLIM5-202ENST00000318007 MEIS2O14770 477 aa17.64■□□□□ 0.41
PDLIM5-202ENST00000318007 DNM1Q05193 864 aaKnown RBP17.64■□□□□ 0.41
PDLIM5-202ENST00000318007 CCAR1Q8IX12 1150 aaKnown RBP17.64■□□□□ 0.41
PDLIM5-202ENST00000318007 MB21D1Q8N884 522 aa17.64■□□□□ 0.41
PDLIM5-202ENST00000318007 TFIP11Q9UBB9 837 aaKnown RBP17.64■□□□□ 0.41
PDLIM5-202ENST00000318007 HTTP42858 3142 aa17.63■□□□□ 0.41
PDLIM5-202ENST00000318007 CCDC194A0A1B0GVG4 234 aa17.63■□□□□ 0.41
PDLIM5-202ENST00000318007 TBC1D8O95759 1140 aa17.63■□□□□ 0.41
PDLIM5-202ENST00000318007 MRPL12P52815 198 aaKnown RBP17.63■□□□□ 0.41
PDLIM5-202ENST00000318007 INHBEP58166 350 aa17.63■□□□□ 0.41
PDLIM5-202ENST00000318007 INF2Q27J81 1249 aa17.63■□□□□ 0.41
PDLIM5-202ENST00000318007 PPP1R18Q6NYC8 613 aa17.63■□□□□ 0.41
PDLIM5-202ENST00000318007 SLC45A1Q9Y2W3 748 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms