RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 IGHMBP2P38935 993 aaKnown RBP8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 RECQLP46063 649 aaPredicted RBP8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 CUL4AQ13619 759 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 NCAPH2Q6IBW4 605 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 PLD3Q8IV08 490 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 CATSPER1Q8NEC5 780 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 TSKSQ9UJT2 592 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 JRKLQ9Y4A0 524 aa8.31□□□□□ -1.08
LIMCH1-201ENST00000313860 TCP11X2Q5H9J9 407 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 HABP4Q5JVS0 413 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 SNX29Q8TEQ0 813 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 VPS16Q9H269 839 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 STON1Q9Y6Q2 735 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 SMARCA2P51531 1590 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 POLR2DO15514 142 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 ABATP80404 500 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 RABL6Q3YEC7 729 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 SPDYE7PQ495Y7 208 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 NUTM2DQ5VT03 806 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 ART5Q96L15 291 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 ERP44Q9BS26 406 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 RETREG1Q9H6L5 497 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 AATFQ9NY61 560 aaKnown RBP eCLIP8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 AP3B1O00203 1094 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 SCAMP1O15126 338 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 MYCLP12524 364 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 S100A5P33763 92 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 BRAPQ7Z569 592 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 KCNV2Q8TDN2 545 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 BHMTQ93088 406 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 RMDN1Q96DB5 314 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 GDAP1L1Q96MZ0 367 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 EHD3Q9NZN3 535 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 DDX19BQ9UMR2 479 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 PPP6R2O75170 966 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 GPC4O75487 556 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 ECM2O94769 699 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 EXOC3L4Q17RC7 722 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 ESRP1Q6NXG1 681 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 CC2D1AQ6P1N0 951 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 ZNF710Q8N1W2 664 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 GABPB2Q8TAK5 448 aaPredicted RBP8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 HEXDCQ8WVB3 486 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 PHACTR3Q96KR7 559 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 CHRAC1Q9NRG0 131 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 TRPC4Q9UBN4 977 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 GARSP41250 739 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 MAGEA2P43356 314 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 UBASH3AP57075 661 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 AP1S1P61966 158 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 LGSNQ5TDP6 509 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 TSR2Q969E8 191 aaKnown RBP8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 TIMMDC1Q9NPL8 285 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 RAD18Q9NS91 495 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 MAP10Q9P2G4 905 aa8.3□□□□□ -1.08
LIMCH1-201ENST00000313860 NPIPA7E9PJI5 369 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 NPIPA8P0DM63 369 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 VAV1P15498 845 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 FEN1P39748 380 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 GJA8P48165 433 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 CNGA3Q16281 694 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 IQCF2Q8IXL9 164 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 S100PBPQ96BU1 408 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 BBS2Q9BXC9 721 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 NACAP1Q9BZK3 213 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 TRPV6Q9H1D0 765 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 ARHGAP26Q9UNA1 814 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 KRT83P78385 493 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 CBLBQ13191 982 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 PDAP1Q13442 181 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 TAF5Q15542 800 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 SYCP2LQ5T4T6 812 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 MYOCDQ8IZQ8 938 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 KCTD4Q8WVF5 259 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 GCC1Q96CN9 775 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 TUBGCP2Q9BSJ2 902 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 CNPY3Q9BT09 278 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 SPRTNQ9H040 489 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 PIGUQ9H490 435 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 CCPG1Q9ULG6 757 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 DIS3Q9Y2L1 958 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 RAD50Q92878 1312 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 PRMT3O60678 531 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 SFNP31947 248 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 KRR1Q13601 381 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 RASGRF1Q13972 1273 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 ANO4Q32M45 955 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 SYTL5Q8TDW5 730 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 TELO2Q9Y4R8 837 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 TIMM8BQ9Y5J9 83 aaPredicted RBP8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 ZNF699Q32M78 642 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 PDCD4Q53EL6 469 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 MSANTD1Q6ZTZ1 278 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 POMGNT2Q8NAT1 580 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 LSM14AQ8ND56 463 aaKnown RBP8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 WASF1Q92558 559 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 ZNF285Q96NJ3 590 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 ANGPTL2Q9UKU9 493 aa8.29□□□□□ -1.08
LIMCH1-201ENST00000313860 ROCK2O75116 1388 aaKnown RBP8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms