RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 IWS1Q96ST2 819 aa14.08□□□□□ -0.16
COL3A1-201ENST00000304636 NUF2Q9BZD4 464 aa14.08□□□□□ -0.16
COL3A1-201ENST00000304636 ARHGEF10LQ9HCE6 1279 aa14.08□□□□□ -0.16
COL3A1-201ENST00000304636 ARHGAP31Q2M1Z3 1444 aa14.08□□□□□ -0.16
COL3A1-201ENST00000304636 SEMA3EO15041 775 aa14.08□□□□□ -0.16
COL3A1-201ENST00000304636 MAN2A1Q16706 1144 aa14.08□□□□□ -0.16
COL3A1-201ENST00000304636 SH2D4BQ5SQS7 431 aa14.08□□□□□ -0.16
COL3A1-201ENST00000304636 MAPKAPK5Q8IW41 473 aa14.08□□□□□ -0.16
COL3A1-201ENST00000304636 TGFBRAP1Q8WUH2 860 aa14.08□□□□□ -0.16
COL3A1-201ENST00000304636 SPATS2LQ9NUQ6 558 aaKnown RBP14.08□□□□□ -0.16
COL3A1-201ENST00000304636 NR1D1P20393 614 aa14.07□□□□□ -0.16
COL3A1-201ENST00000304636 SNX16P57768 344 aa14.07□□□□□ -0.16
COL3A1-201ENST00000304636 TTLL12Q14166 644 aaPredicted RBP14.07□□□□□ -0.16
COL3A1-201ENST00000304636 PTPROQ16827 1216 aa14.07□□□□□ -0.16
COL3A1-201ENST00000304636 MMS22LQ6ZRQ5 1243 aa14.07□□□□□ -0.16
COL3A1-201ENST00000304636 SLFN12Q8IYM2 578 aa14.07□□□□□ -0.16
COL3A1-201ENST00000304636 ATP2A3Q93084 1043 aa14.07□□□□□ -0.16
COL3A1-201ENST00000304636 PGBD1Q96JS3 809 aa14.07□□□□□ -0.16
COL3A1-201ENST00000304636 LARSQ9P2J5 1176 aaKnown RBP14.07□□□□□ -0.16
COL3A1-201ENST00000304636 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.07□□□□□ -0.16
COL3A1-201ENST00000304636 PGRMC1O00264 195 aaKnown RBP14.07□□□□□ -0.16
COL3A1-201ENST00000304636 EXOC3L4Q17RC7 722 aa14.07□□□□□ -0.16
COL3A1-201ENST00000304636 MAEAQ7L5Y9 396 aa14.07□□□□□ -0.16
COL3A1-201ENST00000304636 SDR42E1Q8WUS8 393 aa14.07□□□□□ -0.16
COL3A1-201ENST00000304636 TFCP2L1Q9NZI6 479 aa14.07□□□□□ -0.16
COL3A1-201ENST00000304636 HARSP12081 509 aaKnown RBP14.07□□□□□ -0.16
COL3A1-201ENST00000304636 ATF2P15336 505 aa14.07□□□□□ -0.16
COL3A1-201ENST00000304636 IL9RQ01113 521 aa14.07□□□□□ -0.16
COL3A1-201ENST00000304636 DNAJC10Q8IXB1 793 aa14.07□□□□□ -0.16
COL3A1-201ENST00000304636 GPKOWQ92917 476 aaPredicted RBP eCLIP14.07□□□□□ -0.16
COL3A1-201ENST00000304636 JPH2Q9BR39 696 aaPredicted RBP14.07□□□□□ -0.16
COL3A1-201ENST00000304636 HMGB1P1B2RPK0 211 aaPredicted RBP14.07□□□□□ -0.16
COL3A1-201ENST00000304636 SH2B2O14492 632 aaPredicted RBP14.07□□□□□ -0.16
COL3A1-201ENST00000304636 LMNB1P20700 586 aa14.07□□□□□ -0.16
COL3A1-201ENST00000304636 RASA3Q14644 834 aa14.07□□□□□ -0.16
COL3A1-201ENST00000304636 TADA2BQ86TJ2 420 aa14.07□□□□□ -0.16
COL3A1-201ENST00000304636 PBKQ96KB5 322 aa14.07□□□□□ -0.16
COL3A1-201ENST00000304636 IGSF1Q8N6C5 1336 aa14.07□□□□□ -0.16
COL3A1-201ENST00000304636 IFNAR1P17181 557 aa14.07□□□□□ -0.16
COL3A1-201ENST00000304636 CCDC144BQ3MJ40 725 aa14.07□□□□□ -0.16
COL3A1-201ENST00000304636 ADAT2Q7Z6V5 191 aaKnown RBP14.07□□□□□ -0.16
COL3A1-201ENST00000304636 UHMK1Q8TAS1 419 aaKnown RBP14.07□□□□□ -0.16
COL3A1-201ENST00000304636 LRRC8CQ8TDW0 803 aa14.07□□□□□ -0.16
COL3A1-201ENST00000304636 SPZ1Q9BXG8 430 aa14.07□□□□□ -0.16
COL3A1-201ENST00000304636 RAB20Q9NX57 234 aa14.07□□□□□ -0.16
COL3A1-201ENST00000304636 RPSAP08865 295 aaKnown RBP14.06□□□□□ -0.16
COL3A1-201ENST00000304636 PEX19P40855 299 aa14.06□□□□□ -0.16
COL3A1-201ENST00000304636 CYP2J2P51589 502 aa14.06□□□□□ -0.16
COL3A1-201ENST00000304636 SP4Q02446 784 aa14.06□□□□□ -0.16
COL3A1-201ENST00000304636 ICE2Q659A1 982 aa14.06□□□□□ -0.16
COL3A1-201ENST00000304636 DAAM1Q9Y4D1 1078 aa14.06□□□□□ -0.16
COL3A1-201ENST00000304636 KLRF2D3W0D1 207 aa14.06□□□□□ -0.16
COL3A1-201ENST00000304636 MOCS3O95396 460 aa14.06□□□□□ -0.16
COL3A1-201ENST00000304636 PHKG2P15735 406 aa14.06□□□□□ -0.16
COL3A1-201ENST00000304636 MAN1A1P33908 653 aa14.06□□□□□ -0.16
COL3A1-201ENST00000304636 RESP18Q5W5W9 173 aa14.06□□□□□ -0.16
COL3A1-201ENST00000304636 TOB2Q14106 344 aaPredicted RBP14.06□□□□□ -0.16
COL3A1-201ENST00000304636 E2F5Q15329 346 aa14.06□□□□□ -0.16
COL3A1-201ENST00000304636 TOGARAM2Q6ZUX3 1019 aa14.06□□□□□ -0.16
COL3A1-201ENST00000304636 ARHGEF25Q86VW2 580 aa14.06□□□□□ -0.16
COL3A1-201ENST00000304636 TPH2Q8IWU9 490 aa14.06□□□□□ -0.16
COL3A1-201ENST00000304636 RDH13Q8NBN7 331 aa14.06□□□□□ -0.16
COL3A1-201ENST00000304636 TCP11Q8WWU5 503 aa14.06□□□□□ -0.16
COL3A1-201ENST00000304636 PAGE5Q96GU1 130 aa14.06□□□□□ -0.16
COL3A1-201ENST00000304636 PCDHA4Q9UN74 947 aa14.06□□□□□ -0.16
COL3A1-201ENST00000304636 CTNND1O60716 968 aaKnown RBP14.06□□□□□ -0.16
COL3A1-201ENST00000304636 GGA1Q9UJY5 639 aa14.06□□□□□ -0.16
COL3A1-201ENST00000304636 SETSIPP0DME0 302 aa14.05□□□□□ -0.16
COL3A1-201ENST00000304636 HOXA7P31268 230 aaPredicted RBP14.05□□□□□ -0.16
COL3A1-201ENST00000304636 GYS2P54840 703 aa14.05□□□□□ -0.16
COL3A1-201ENST00000304636 RSAD2Q8WXG1 361 aa14.05□□□□□ -0.16
COL3A1-201ENST00000304636 CCDC87Q9NVE4 849 aa14.05□□□□□ -0.16
COL3A1-201ENST00000304636 COL4A3BPQ9Y5P4 624 aa14.05□□□□□ -0.16
COL3A1-201ENST00000304636 CYP2E1P05181 493 aaPredicted RBP14.05□□□□□ -0.16
COL3A1-201ENST00000304636 IFNAR2P48551 515 aa14.05□□□□□ -0.16
COL3A1-201ENST00000304636 PROSER3Q2NL68 480 aa14.05□□□□□ -0.16
COL3A1-201ENST00000304636 TCP11X2Q5H9J9 407 aa14.05□□□□□ -0.16
COL3A1-201ENST00000304636 C10orf76Q5T2E6 689 aa14.05□□□□□ -0.16
COL3A1-201ENST00000304636 DDX25Q9UHL0 483 aaKnown RBP14.05□□□□□ -0.16
COL3A1-201ENST00000304636 PCDHA13Q9Y5I0 950 aa14.05□□□□□ -0.16
COL3A1-201ENST00000304636 CDK12Q9NYV4 1490 aaPredicted RBP14.05□□□□□ -0.16
COL3A1-201ENST00000304636 FRMD3A2A2Y4 597 aa14.05□□□□□ -0.16
COL3A1-201ENST00000304636 ARHGAP42A6NI28 874 aa14.05□□□□□ -0.16
COL3A1-201ENST00000304636 RNASELQ05823 741 aaKnown RBP14.05□□□□□ -0.16
COL3A1-201ENST00000304636 TTLL7Q6ZT98 887 aa14.05□□□□□ -0.16
COL3A1-201ENST00000304636 GABPB2Q8TAK5 448 aaPredicted RBP14.05□□□□□ -0.16
COL3A1-201ENST00000304636 LARP4BQ92615 738 aaKnown RBP14.05□□□□□ -0.16
COL3A1-201ENST00000304636 UIMC1Q96RL1 719 aa14.05□□□□□ -0.16
COL3A1-201ENST00000304636 MLH3Q9UHC1 1453 aa14.05□□□□□ -0.16
COL3A1-201ENST00000304636 NAA35Q5VZE5 725 aa14.05□□□□□ -0.16
COL3A1-201ENST00000304636 KIF2CQ99661 725 aa14.05□□□□□ -0.16
COL3A1-201ENST00000304636 Q9H521 79 aa14.05□□□□□ -0.16
COL3A1-201ENST00000304636 PSTPIP2Q9H939 334 aa14.05□□□□□ -0.16
COL3A1-201ENST00000304636 KCNG1Q9UIX4 513 aa14.05□□□□□ -0.16
COL3A1-201ENST00000304636 EIF3CLB5ME19 914 aaKnown RBP14.04□□□□□ -0.16
COL3A1-201ENST00000304636 EIF3BP55884 814 aaKnown RBP14.04□□□□□ -0.16
COL3A1-201ENST00000304636 RBBP5Q15291 538 aaKnown RBP14.04□□□□□ -0.16
COL3A1-201ENST00000304636 GEN1Q17RS7 908 aa14.04□□□□□ -0.16
COL3A1-201ENST00000304636 GLE1Q53GS7 698 aaKnown RBP14.04□□□□□ -0.16
COL3A1-201ENST00000304636 RBM26Q5T8P6 1007 aaKnown RBP14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms