RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 MAST3O60307 1309 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 COL3A1P02461 1466 aaPredicted RBP10.8□□□□□ -0.68
COL6A3-201ENST00000295550 FNBP1Q96RU3 617 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 RESTQ13127 1097 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 HAUS3Q68CZ6 603 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 NUCKS1Q9H1E3 243 aaKnown RBP10.8□□□□□ -0.68
COL6A3-201ENST00000295550 MYO9BQ13459 2157 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 FGAP02671 866 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 NECTIN1Q15223 517 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 N4BP2L2Q92802 583 aaPredicted RBP10.8□□□□□ -0.68
COL6A3-201ENST00000295550 TMEM131LA2VDJ0 1609 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 MICAL3Q7RTP6 2002 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 CYP21A2P08686 494 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 NSFL1CQ9UNZ2 370 aaKnown RBP10.8□□□□□ -0.68
COL6A3-201ENST00000295550 SART1O43290 800 aaKnown RBP10.8□□□□□ -0.68
COL6A3-201ENST00000295550 PCP11498 1178 aaKnown RBP10.8□□□□□ -0.68
COL6A3-201ENST00000295550 CCT5P48643 541 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 ACSBG1Q96GR2 724 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 EIF2AQ9BY44 585 aaKnown RBP10.8□□□□□ -0.68
COL6A3-201ENST00000295550 CCDC87Q9NVE4 849 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 MAPK8IP1Q9UQF2 711 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 DIP2AQ14689 1571 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 ESRRGP62508 458 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 PPP2R5AQ15172 486 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 UBE3CQ15386 1083 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 NBPF14Q5TI25 921 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 RSAD2Q8WXG1 361 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 KRIT1O00522 736 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 DTNBO60941 627 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 SUN1O94901 812 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 IFT88Q13099 833 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 PICALMQ13492 652 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 EFCAB13Q8IY85 973 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 RABGGTAQ92696 567 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 SERTAD1Q9UHV2 236 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 RCOR1Q9UKL0 485 aa10.8□□□□□ -0.68
COL6A3-201ENST00000295550 ADCY7P51828 1080 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 TYW1BQ6NUM6 668 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.79□□□□□ -0.68
COL6A3-201ENST00000295550 BPIFA3Q9BQP9 254 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 FOXP1Q9H334 677 aaPredicted RBP10.79□□□□□ -0.68
COL6A3-201ENST00000295550 MRFAP1Q9Y605 127 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 GSTA1P08263 222 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 GSTA2P09210 222 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 PLCB4Q15147 1175 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 SARM1Q6SZW1 724 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 SPTLC3Q9NUV7 552 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 VPS54Q9P1Q0 977 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 USTQ9Y2C2 406 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 TTLL3Q9Y4R7 772 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 FMNL1O95466 1100 aaPredicted RBP10.79□□□□□ -0.68
COL6A3-201ENST00000295550 PPP2R5EQ16537 467 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 USP31Q70CQ4 1352 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 KSR1Q8IVT5 923 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 SCHIP1Q9P0W5 487 aaPredicted RBP10.79□□□□□ -0.68
COL6A3-201ENST00000295550 NRBP1Q9UHY1 535 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 NUB1Q9Y5A7 615 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.79□□□□□ -0.68
COL6A3-201ENST00000295550 CRB1P82279 1406 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 NLRP7Q8WX94 980 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 LRGUKQ96M69 825 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 ALDH8A1Q9H2A2 487 aaPredicted RBP10.79□□□□□ -0.68
COL6A3-201ENST00000295550 MYO1AQ9UBC5 1043 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 A1BGP04217 495 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 JPH2Q9BR39 696 aaPredicted RBP10.79□□□□□ -0.68
COL6A3-201ENST00000295550 ZNF219Q9P2Y4 722 aaPredicted RBP10.79□□□□□ -0.68
COL6A3-201ENST00000295550 SCOCQ9UIL1 159 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 RPAP1Q9BWH6 1393 aaPredicted RBP10.79□□□□□ -0.68
COL6A3-201ENST00000295550 BACH1O14867 736 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 NONOQ15233 471 aaKnown RBP eCLIP10.79□□□□□ -0.68
COL6A3-201ENST00000295550 DPCR1Q3MIW9 517 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 MMEL1Q495T6 779 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 CCDC197Q8NCU1 140 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 DESI2Q9BSY9 194 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 GTPBP6O43824 516 aaPredicted RBP10.79□□□□□ -0.68
COL6A3-201ENST00000295550 CTAGE3PQ8IX95 158 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 VTI1AQ96AJ9 217 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 TXLNGQ9NUQ3 528 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 PALM3A6NDB9 673 aaPredicted RBP10.79□□□□□ -0.68
COL6A3-201ENST00000295550 ATP8B1O43520 1251 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 ANKRD20A4Q4UJ75 823 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 ANKRD20A8PQ5CZ79 823 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 ANKRD20A2Q5SQ80 823 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 ANKRD20A1Q5TYW2 823 aa10.79□□□□□ -0.68
COL6A3-201ENST00000295550 TTC19Q6DKK2 380 aaPredicted RBP10.78□□□□□ -0.68
COL6A3-201ENST00000295550 GALNT17Q6IS24 598 aa10.78□□□□□ -0.68
COL6A3-201ENST00000295550 C2CD5Q86YS7 1000 aa10.78□□□□□ -0.68
COL6A3-201ENST00000295550 NGLY1Q96IV0 654 aa10.78□□□□□ -0.68
COL6A3-201ENST00000295550 FANCLQ9NW38 375 aa10.78□□□□□ -0.68
COL6A3-201ENST00000295550 CHMP2AO43633 222 aa10.78□□□□□ -0.68
COL6A3-201ENST00000295550 FBXO41Q8TF61 875 aa10.78□□□□□ -0.68
COL6A3-201ENST00000295550 PSPC1Q8WXF1 523 aaKnown RBP10.78□□□□□ -0.68
COL6A3-201ENST00000295550 RIC8AQ9NPQ8 531 aa10.78□□□□□ -0.68
COL6A3-201ENST00000295550 LARGE1O95461 756 aa10.78□□□□□ -0.68
COL6A3-201ENST00000295550 CALCRLQ16602 461 aa10.78□□□□□ -0.68
COL6A3-201ENST00000295550 FANCBQ8NB91 859 aa10.78□□□□□ -0.68
COL6A3-201ENST00000295550 TRIM58Q8NG06 486 aa10.78□□□□□ -0.68
COL6A3-201ENST00000295550 PIP4K2CQ8TBX8 421 aa10.78□□□□□ -0.68
COL6A3-201ENST00000295550 ZDHHC9Q9Y397 364 aa10.78□□□□□ -0.68
COL6A3-201ENST00000295550 NPHP4O75161 1426 aaPredicted RBP10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms