RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 KCNB1Q14721 858 aa22.57■■□□□ 1.2
VPS53-201ENST00000291074 COL23A1Q86Y22 540 aaPredicted RBP22.57■■□□□ 1.2
VPS53-201ENST00000291074 MYH4Q9Y623 1939 aa22.57■■□□□ 1.2
VPS53-201ENST00000291074 ITIH6Q6UXX5 1313 aa22.57■■□□□ 1.2
VPS53-201ENST00000291074 CDC42EP5Q6NZY7 148 aa22.57■■□□□ 1.2
VPS53-201ENST00000291074 EEF2KMTQ96G04 330 aa22.57■■□□□ 1.2
VPS53-201ENST00000291074 MMTAG2Q9BU76 263 aaKnown RBP22.57■■□□□ 1.2
VPS53-201ENST00000291074 LZTFL1Q9NQ48 299 aa22.57■■□□□ 1.2
VPS53-201ENST00000291074 KCNQ5Q9NR82 932 aa22.57■■□□□ 1.2
VPS53-201ENST00000291074 GOLGA6L9A6NEM1 432 aa22.56■■□□□ 1.2
VPS53-201ENST00000291074 RHOBTB3O94955 611 aa22.56■■□□□ 1.2
VPS53-201ENST00000291074 CCDC175P0C221 793 aa22.56■■□□□ 1.2
VPS53-201ENST00000291074 SHMT1P34896 483 aa22.56■■□□□ 1.2
VPS53-201ENST00000291074 TXKP42681 527 aa22.56■■□□□ 1.2
VPS53-201ENST00000291074 NFIAQ12857 509 aa22.56■■□□□ 1.2
VPS53-201ENST00000291074 TTBK2Q6IQ55 1244 aa22.56■■□□□ 1.2
VPS53-201ENST00000291074 ADGRG1Q9Y653 693 aa22.56■■□□□ 1.2
VPS53-201ENST00000291074 ATP2B2Q01814 1243 aa22.56■■□□□ 1.2
VPS53-201ENST00000291074 ASPRV1Q53RT3 343 aa22.56■■□□□ 1.2
VPS53-201ENST00000291074 GIMAP8Q8ND71 665 aaPredicted RBP22.56■■□□□ 1.2
VPS53-201ENST00000291074 AK8Q96MA6 479 aa22.56■■□□□ 1.2
VPS53-201ENST00000291074 CARD6Q9BX69 1037 aa22.56■■□□□ 1.2
VPS53-201ENST00000291074 PRDM10Q9NQV6 1147 aa22.56■■□□□ 1.2
VPS53-201ENST00000291074 NRXN2Q9P2S2 1712 aa22.56■■□□□ 1.2
VPS53-201ENST00000291074 ESYT2A0FGR8 921 aa22.55■■□□□ 1.2
VPS53-201ENST00000291074 TDP2O95551 362 aa22.55■■□□□ 1.2
VPS53-201ENST00000291074 SNHG28P0DPA3 235 aa22.55■■□□□ 1.2
VPS53-201ENST00000291074 CASQ1P31415 396 aa22.55■■□□□ 1.2
VPS53-201ENST00000291074 CNGA4Q8IV77 575 aa22.55■■□□□ 1.2
VPS53-201ENST00000291074 ANKRD20A12PQ8NF67 263 aa22.55■■□□□ 1.2
VPS53-201ENST00000291074 PCDHAC2Q9Y5I4 1007 aa22.55■■□□□ 1.2
VPS53-201ENST00000291074 SLC37A4O43826 429 aa22.55■■□□□ 1.2
VPS53-201ENST00000291074 EDIL3O43854 480 aa22.55■■□□□ 1.2
VPS53-201ENST00000291074 NPR1P16066 1061 aa22.55■■□□□ 1.2
VPS53-201ENST00000291074 ADCY7P51828 1080 aa22.55■■□□□ 1.2
VPS53-201ENST00000291074 UBXN1Q04323 297 aa22.55■■□□□ 1.2
VPS53-201ENST00000291074 ZFPM1Q8IX07 1006 aa22.55■■□□□ 1.2
VPS53-201ENST00000291074 KIFC2Q96AC6 838 aa22.55■■□□□ 1.2
VPS53-201ENST00000291074 TRIM47Q96LD4 638 aa22.55■■□□□ 1.2
VPS53-201ENST00000291074 TRIM9Q9C026 710 aa22.55■■□□□ 1.2
VPS53-201ENST00000291074 SUGT1Q9Y2Z0 365 aa22.55■■□□□ 1.2
VPS53-201ENST00000291074 H7C1D1 291 aa22.54■■□□□ 1.2
VPS53-201ENST00000291074 MPHOSPH10O00566 681 aaKnown RBP22.54■■□□□ 1.2
VPS53-201ENST00000291074 PPP1R11O60927 126 aaPredicted RBP22.54■■□□□ 1.2
VPS53-201ENST00000291074 TTLL1O95922 423 aa22.54■■□□□ 1.2
VPS53-201ENST00000291074 SLC16A2P36021 539 aa22.54■■□□□ 1.2
VPS53-201ENST00000291074 NUP88Q99567 741 aaPredicted RBP22.54■■□□□ 1.2
VPS53-201ENST00000291074 SRRTQ9BXP5 876 aaKnown RBP22.54■■□□□ 1.2
VPS53-201ENST00000291074 DBNDD1Q9H9R9 158 aa22.54■■□□□ 1.2
VPS53-201ENST00000291074 CACNB3P54284 484 aa22.54■■□□□ 1.2
VPS53-201ENST00000291074 ERVK-24P63145 666 aa22.54■■□□□ 1.2
VPS53-201ENST00000291074 ZNF543Q08ER8 600 aa22.54■■□□□ 1.2
VPS53-201ENST00000291074 UBE2SQ16763 222 aa22.54■■□□□ 1.2
VPS53-201ENST00000291074 APOBEC3HQ6NTF7 200 aaKnown RBP22.54■■□□□ 1.2
VPS53-201ENST00000291074 HPS3Q969F9 1004 aa22.54■■□□□ 1.2
VPS53-201ENST00000291074 NAA15Q9BXJ9 866 aaKnown RBP22.54■■□□□ 1.2
VPS53-201ENST00000291074 JMJD4Q9H9V9 463 aa22.54■■□□□ 1.2
VPS53-201ENST00000291074 G3V3G9 751 aa22.54■■□□□ 1.2
VPS53-201ENST00000291074 ASIC1P78348 528 aa22.54■■□□□ 1.2
VPS53-201ENST00000291074 PDE4DQ08499 809 aa22.54■■□□□ 1.2
VPS53-201ENST00000291074 DCAF8Q5TAQ9 597 aa22.54■■□□□ 1.2
VPS53-201ENST00000291074 ADGRF4Q8IZF3 695 aa22.54■■□□□ 1.2
VPS53-201ENST00000291074 ABHD10Q9NUJ1 306 aa22.54■■□□□ 1.2
VPS53-201ENST00000291074 FAM196BA6NMK8 535 aa22.53■■□□□ 1.2
VPS53-201ENST00000291074 PES1O00541 588 aaKnown RBP22.53■■□□□ 1.2
VPS53-201ENST00000291074 PSMA7O14818 248 aa22.53■■□□□ 1.2
VPS53-201ENST00000291074 MYL1P05976 194 aa22.53■■□□□ 1.2
VPS53-201ENST00000291074 FCER1AP12319 257 aa22.53■■□□□ 1.2
VPS53-201ENST00000291074 SHROOM1Q2M3G4 852 aaPredicted RBP22.53■■□□□ 1.2
VPS53-201ENST00000291074 ACRBPQ8NEB7 543 aa22.53■■□□□ 1.2
VPS53-201ENST00000291074 MNS1Q8NEH6 495 aa22.53■■□□□ 1.2
VPS53-201ENST00000291074 TPM1P09493 284 aa22.53■■□□□ 1.2
VPS53-201ENST00000291074 STK4Q13043 487 aa22.53■■□□□ 1.2
VPS53-201ENST00000291074 CALCRLQ16602 461 aa22.53■■□□□ 1.2
VPS53-201ENST00000291074 MSL1Q68DK7 614 aa22.53■■□□□ 1.2
VPS53-201ENST00000291074 TTI2Q6NXR4 508 aa22.53■■□□□ 1.2
VPS53-201ENST00000291074 KCTD1Q719H9 257 aa22.53■■□□□ 1.2
VPS53-201ENST00000291074 CUEDC2Q9H467 287 aa22.53■■□□□ 1.2
VPS53-201ENST00000291074 MMP10P09238 476 aa22.52■■□□□ 1.2
VPS53-201ENST00000291074 TNNI2P48788 182 aa22.52■■□□□ 1.2
VPS53-201ENST00000291074 STIM1Q13586 685 aa22.52■■□□□ 1.2
VPS53-201ENST00000291074 CCDC96Q2M329 555 aa22.52■■□□□ 1.2
VPS53-201ENST00000291074 ARHGAP29Q52LW3 1261 aa22.52■■□□□ 1.2
VPS53-201ENST00000291074 NLGN1Q8N2Q7 840 aa22.52■■□□□ 1.2
VPS53-201ENST00000291074 TEKT1Q969V4 418 aa22.52■■□□□ 1.2
VPS53-201ENST00000291074 MTMR9Q96QG7 549 aa22.52■■□□□ 1.2
VPS53-201ENST00000291074 DUSP9Q99956 384 aaKnown RBP22.52■■□□□ 1.2
VPS53-201ENST00000291074 EXOC1Q9NV70 894 aa22.52■■□□□ 1.2
VPS53-201ENST00000291074 MYH7BA7E2Y1 1941 aa22.52■■□□□ 1.19
VPS53-201ENST00000291074 GREB1LQ9C091 1923 aaPredicted RBP22.52■■□□□ 1.19
VPS53-201ENST00000291074 POTEMA6NI47 508 aa22.51■■□□□ 1.19
VPS53-201ENST00000291074 TADA3O75528 432 aa22.51■■□□□ 1.19
VPS53-201ENST00000291074 GRB10Q13322 594 aa22.51■■□□□ 1.19
VPS53-201ENST00000291074 CCDC51Q96ER9 411 aa22.51■■□□□ 1.19
VPS53-201ENST00000291074 FEZ1Q99689 392 aa22.51■■□□□ 1.19
VPS53-201ENST00000291074 SWAP70Q9UH65 585 aa22.51■■□□□ 1.19
VPS53-201ENST00000291074 hCG_1984214I3L0E3 225 aa22.51■■□□□ 1.19
VPS53-201ENST00000291074 FECHP22830 423 aa22.51■■□□□ 1.19
VPS53-201ENST00000291074 KRT9P35527 623 aa22.51■■□□□ 1.19
VPS53-201ENST00000291074 TCP10Q12799 353 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms