RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 APTXQ7Z2E3 356 aaKnown RBP11.64□□□□□ -0.55
UPF3B-201ENST00000276201 CTAGE1Q96RT6 745 aa11.64□□□□□ -0.55
UPF3B-201ENST00000276201 MRPL44Q9H9J2 332 aaKnown RBP11.64□□□□□ -0.55
UPF3B-201ENST00000276201 GPHNQ9NQX3 736 aaPredicted RBP11.64□□□□□ -0.55
UPF3B-201ENST00000276201 NFE2L3Q9Y4A8 694 aa11.64□□□□□ -0.55
UPF3B-201ENST00000276201 OTOFQ9HC10 1997 aa11.64□□□□□ -0.55
UPF3B-201ENST00000276201 PPP1R12BO60237 982 aaPredicted RBP11.63□□□□□ -0.55
UPF3B-201ENST00000276201 ENTPD3O75355 529 aa11.63□□□□□ -0.55
UPF3B-201ENST00000276201 USP2O75604 605 aaPredicted RBP11.63□□□□□ -0.55
UPF3B-201ENST00000276201 MAGEA9P43362 315 aa11.63□□□□□ -0.55
UPF3B-201ENST00000276201 AARSP49588 968 aaKnown RBP eCLIP11.63□□□□□ -0.55
UPF3B-201ENST00000276201 ZNF157P51786 506 aaPredicted RBP11.63□□□□□ -0.55
UPF3B-201ENST00000276201 PDE4CQ08493 712 aa11.63□□□□□ -0.55
UPF3B-201ENST00000276201 PICALMQ13492 652 aa11.63□□□□□ -0.55
UPF3B-201ENST00000276201 SH3BP5LQ7L8J4 393 aa11.63□□□□□ -0.55
UPF3B-201ENST00000276201 RASAL3Q86YV0 1011 aa11.63□□□□□ -0.55
UPF3B-201ENST00000276201 CCDC34Q96HJ3 373 aa11.63□□□□□ -0.55
UPF3B-201ENST00000276201 MTA3Q9BTC8 594 aa11.63□□□□□ -0.55
UPF3B-201ENST00000276201 ZNF213O14771 459 aa11.63□□□□□ -0.55
UPF3B-201ENST00000276201 BAG3O95817 575 aa11.63□□□□□ -0.55
UPF3B-201ENST00000276201 CPP00450 1065 aa11.63□□□□□ -0.55
UPF3B-201ENST00000276201 SLC10A3P09131 477 aa11.63□□□□□ -0.55
UPF3B-201ENST00000276201 MCM3P25205 808 aa11.63□□□□□ -0.55
UPF3B-201ENST00000276201 CDC27P30260 824 aa11.63□□□□□ -0.55
UPF3B-201ENST00000276201 LMAN1P49257 510 aa11.63□□□□□ -0.55
UPF3B-201ENST00000276201 METAP2P50579 478 aaKnown RBP eCLIP11.63□□□□□ -0.55
UPF3B-201ENST00000276201 RCAN1P53805 252 aa11.63□□□□□ -0.55
UPF3B-201ENST00000276201 DYNLL1P63167 89 aaKnown RBP11.63□□□□□ -0.55
UPF3B-201ENST00000276201 ALX1Q15699 326 aa11.63□□□□□ -0.55
UPF3B-201ENST00000276201 SLC9C2Q5TAH2 1124 aa11.63□□□□□ -0.55
UPF3B-201ENST00000276201 TMED8Q6PL24 325 aaPredicted RBP11.63□□□□□ -0.55
UPF3B-201ENST00000276201 TEX11Q8IYF3 940 aa11.63□□□□□ -0.55
UPF3B-201ENST00000276201 MIGA1Q8NAN2 632 aa11.63□□□□□ -0.55
UPF3B-201ENST00000276201 BRMS1Q9HCU9 246 aa11.63□□□□□ -0.55
UPF3B-201ENST00000276201 MYH6P13533 1939 aa11.63□□□□□ -0.55
UPF3B-201ENST00000276201 MYH8P13535 1937 aa11.63□□□□□ -0.55
UPF3B-201ENST00000276201 CDK5RAP2Q96SN8 1893 aa11.63□□□□□ -0.55
UPF3B-201ENST00000276201 ATRNL1Q5VV63 1379 aa11.62□□□□□ -0.55
UPF3B-201ENST00000276201 TCRBV5S4A2TA0A5A2 114 aa11.62□□□□□ -0.55
UPF3B-201ENST00000276201 NPM3O75607 178 aaKnown RBP11.62□□□□□ -0.55
UPF3B-201ENST00000276201 LIFRP42702 1097 aa11.62□□□□□ -0.55
UPF3B-201ENST00000276201 TRIM29Q14134 588 aa11.62□□□□□ -0.55
UPF3B-201ENST00000276201 CDKAL1Q5VV42 579 aa11.62□□□□□ -0.55
UPF3B-201ENST00000276201 SPATA1Q5VX52 437 aa11.62□□□□□ -0.55
UPF3B-201ENST00000276201 CTCFLQ8NI51 663 aaPredicted RBP11.62□□□□□ -0.55
UPF3B-201ENST00000276201 CLMNQ96JQ2 1002 aa11.62□□□□□ -0.55
UPF3B-201ENST00000276201 ZIC5Q96T25 663 aa11.62□□□□□ -0.55
UPF3B-201ENST00000276201 EPC1Q9H2F5 836 aa11.62□□□□□ -0.55
UPF3B-201ENST00000276201 FBXO2Q9UK22 296 aaPredicted RBP11.62□□□□□ -0.55
UPF3B-201ENST00000276201 ZNF532Q9HCE3 1301 aa11.62□□□□□ -0.55
UPF3B-201ENST00000276201 CTAGE9A4FU28 777 aa11.62□□□□□ -0.55
UPF3B-201ENST00000276201 PLCG2P16885 1265 aa11.62□□□□□ -0.55
UPF3B-201ENST00000276201 IREB2P48200 963 aaKnown RBP11.62□□□□□ -0.55
UPF3B-201ENST00000276201 GOLGA8FQ08AF8 430 aa11.62□□□□□ -0.55
UPF3B-201ENST00000276201 GOLGA8DPQ0D2H9 430 aa11.62□□□□□ -0.55
UPF3B-201ENST00000276201 TRDNQ13061 729 aa11.62□□□□□ -0.55
UPF3B-201ENST00000276201 RILPL1Q5EBL4 403 aa11.62□□□□□ -0.55
UPF3B-201ENST00000276201 APOA5Q6Q788 366 aa11.62□□□□□ -0.55
UPF3B-201ENST00000276201 CNGA4Q8IV77 575 aa11.62□□□□□ -0.55
UPF3B-201ENST00000276201 PDILTQ8N807 584 aa11.62□□□□□ -0.55
UPF3B-201ENST00000276201 CCDC102AQ96A19 550 aa11.62□□□□□ -0.55
UPF3B-201ENST00000276201 FOXP1Q9H334 677 aaPredicted RBP11.62□□□□□ -0.55
UPF3B-201ENST00000276201 PDE11AQ9HCR9 933 aa11.62□□□□□ -0.55
UPF3B-201ENST00000276201 FOCADQ5VW36 1801 aa11.62□□□□□ -0.55
UPF3B-201ENST00000276201 DDTLA6NHG4 134 aaPredicted RBP11.61□□□□□ -0.55
UPF3B-201ENST00000276201 ACTN4O43707 911 aaKnown RBP11.61□□□□□ -0.55
UPF3B-201ENST00000276201 MFAP3LO75121 409 aa11.61□□□□□ -0.55
UPF3B-201ENST00000276201 FMNL1O95466 1100 aaPredicted RBP11.61□□□□□ -0.55
UPF3B-201ENST00000276201 ADKP55263 362 aaKnown RBP11.61□□□□□ -0.55
UPF3B-201ENST00000276201 TRIM14Q14142 442 aa11.61□□□□□ -0.55
UPF3B-201ENST00000276201 ISM2Q6H9L7 571 aa11.61□□□□□ -0.55
UPF3B-201ENST00000276201 ZNF662Q6ZS27 426 aa11.61□□□□□ -0.55
UPF3B-201ENST00000276201 TMTC1Q8IUR5 882 aa11.61□□□□□ -0.55
UPF3B-201ENST00000276201 NOSTRINQ8IVI9 506 aa11.61□□□□□ -0.55
UPF3B-201ENST00000276201 STK11IPQ8N1F8 1099 aa11.61□□□□□ -0.55
UPF3B-201ENST00000276201 HOOK2Q96ED9 719 aa11.61□□□□□ -0.55
UPF3B-201ENST00000276201 ADD3Q9UEY8 706 aaKnown RBP11.61□□□□□ -0.55
UPF3B-201ENST00000276201 CEP131Q9UPN4 1083 aa11.61□□□□□ -0.55
UPF3B-201ENST00000276201 SRPRBQ9Y5M8 271 aaKnown RBP11.61□□□□□ -0.55
UPF3B-201ENST00000276201 COL2A1P02458 1487 aaPredicted RBP11.61□□□□□ -0.55
UPF3B-201ENST00000276201 ADD2P35612 726 aa11.61□□□□□ -0.55
UPF3B-201ENST00000276201 MAP2K2P36507 400 aa11.61□□□□□ -0.55
UPF3B-201ENST00000276201 NOGQ13253 232 aa11.61□□□□□ -0.55
UPF3B-201ENST00000276201 RAD9BQ6WBX8 426 aa11.61□□□□□ -0.55
UPF3B-201ENST00000276201 MIGA2Q7L4E1 593 aa11.61□□□□□ -0.55
UPF3B-201ENST00000276201 PPFIBP1Q86W92 1011 aa11.61□□□□□ -0.55
UPF3B-201ENST00000276201 DDX55Q8NHQ9 600 aaKnown RBP eCLIP11.61□□□□□ -0.55
UPF3B-201ENST00000276201 MED15Q96RN5 788 aa11.61□□□□□ -0.55
UPF3B-201ENST00000276201 CSRNP1Q96S65 589 aa11.61□□□□□ -0.55
UPF3B-201ENST00000276201 PNKPQ96T60 521 aa11.61□□□□□ -0.55
UPF3B-201ENST00000276201 NAPGQ99747 312 aaPredicted RBP11.61□□□□□ -0.55
UPF3B-201ENST00000276201 RIOK1Q9BRS2 568 aaKnown RBP11.61□□□□□ -0.55
UPF3B-201ENST00000276201 NBPF3Q9H094 633 aa11.61□□□□□ -0.55
UPF3B-201ENST00000276201 RSPH14Q9UHP6 348 aa11.61□□□□□ -0.55
UPF3B-201ENST00000276201 FLT1P17948 1338 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 VGLL3A8MV65 326 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 IFNAR1P17181 557 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 CORO7P57737 925 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 CUL4BQ13620 913 aa11.6□□□□□ -0.55
UPF3B-201ENST00000276201 DCAF15Q66K64 600 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms