RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 ARFGAP2Q8N6H7 521 aa10.19□□□□□ -0.78
PDGFC-201ENST00000274071 ENOX1Q8TC92 643 aaKnown RBP10.19□□□□□ -0.78
PDGFC-201ENST00000274071 RAPGEF5Q92565 580 aa10.19□□□□□ -0.78
PDGFC-201ENST00000274071 ANKRD27Q96NW4 1050 aa10.19□□□□□ -0.78
PDGFC-201ENST00000274071 RHBDL2Q9NX52 303 aa10.19□□□□□ -0.78
PDGFC-201ENST00000274071 TFR2Q9UP52 801 aa10.19□□□□□ -0.78
PDGFC-201ENST00000274071 AGAP1Q9UPQ3 857 aa10.19□□□□□ -0.78
PDGFC-201ENST00000274071 THRAP3Q9Y2W1 955 aaKnown RBP10.19□□□□□ -0.78
PDGFC-201ENST00000274071 ZMYM6O95789 1325 aa10.19□□□□□ -0.78
PDGFC-201ENST00000274071 FOXO3O43524 673 aa10.18□□□□□ -0.78
PDGFC-201ENST00000274071 GFPT2O94808 682 aa10.18□□□□□ -0.78
PDGFC-201ENST00000274071 YEATS4O95619 227 aa10.18□□□□□ -0.78
PDGFC-201ENST00000274071 FAM153BP0C7A2 387 aa10.18□□□□□ -0.78
PDGFC-201ENST00000274071 FAM200BP0CF97 657 aa10.18□□□□□ -0.78
PDGFC-201ENST00000274071 NQO1P15559 274 aaKnown RBP10.18□□□□□ -0.78
PDGFC-201ENST00000274071 PBX1P40424 430 aa10.18□□□□□ -0.78
PDGFC-201ENST00000274071 BTG3Q14201 252 aaPredicted RBP10.18□□□□□ -0.78
PDGFC-201ENST00000274071 MTHFSDQ2M296 383 aaKnown RBP10.18□□□□□ -0.78
PDGFC-201ENST00000274071 FAM153CQ494X1 144 aa10.18□□□□□ -0.78
PDGFC-201ENST00000274071 METTL16Q86W50 562 aaKnown RBP10.18□□□□□ -0.78
PDGFC-201ENST00000274071 CNGA4Q8IV77 575 aa10.18□□□□□ -0.78
PDGFC-201ENST00000274071 LMNTD2Q8IXW0 634 aa10.18□□□□□ -0.78
PDGFC-201ENST00000274071 FAM81BQ96LP2 452 aa10.18□□□□□ -0.78
PDGFC-201ENST00000274071 MTA3Q9BTC8 594 aa10.18□□□□□ -0.78
PDGFC-201ENST00000274071 POLR3EQ9NVU0 708 aa10.18□□□□□ -0.78
PDGFC-201ENST00000274071 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.18□□□□□ -0.78
PDGFC-201ENST00000274071 DLGAP2Q9P1A6 1054 aa10.18□□□□□ -0.78
PDGFC-201ENST00000274071 FAM153AQ9UHL3 310 aa10.18□□□□□ -0.78
PDGFC-201ENST00000274071 TMCO1Q9UM00 188 aa10.18□□□□□ -0.78
PDGFC-201ENST00000274071 WDR37Q9Y2I8 494 aa10.18□□□□□ -0.78
PDGFC-201ENST00000274071 GMEB1Q9Y692 573 aa10.18□□□□□ -0.78
PDGFC-201ENST00000274071 MROH7-TTC4A0A0A0MT08 1334 aa10.18□□□□□ -0.78
PDGFC-201ENST00000274071 F8VZ95 297 aa10.18□□□□□ -0.78
PDGFC-201ENST00000274071 GLRX3O76003 335 aaKnown RBP10.18□□□□□ -0.78
PDGFC-201ENST00000274071 PCK1P35558 622 aa10.18□□□□□ -0.78
PDGFC-201ENST00000274071 IQCEQ6IPM2 695 aa10.18□□□□□ -0.78
PDGFC-201ENST00000274071 RUBCNQ92622 972 aa10.18□□□□□ -0.78
PDGFC-201ENST00000274071 BRD8Q9H0E9 1235 aa10.18□□□□□ -0.78
PDGFC-201ENST00000274071 TAF1DQ9H5J8 278 aaPredicted RBP10.18□□□□□ -0.78
PDGFC-201ENST00000274071 ADAM22Q9P0K1 906 aa10.18□□□□□ -0.78
PDGFC-201ENST00000274071 STIM2Q9P246 746 aa10.18□□□□□ -0.78
PDGFC-201ENST00000274071 LNPEPQ9UIQ6 1025 aa10.18□□□□□ -0.78
PDGFC-201ENST00000274071 IGSF1Q8N6C5 1336 aa10.18□□□□□ -0.78
PDGFC-201ENST00000274071 RNF225M0QZC1 329 aaPredicted RBP10.17□□□□□ -0.78
PDGFC-201ENST00000274071 CHL1O00533 1208 aa10.17□□□□□ -0.78
PDGFC-201ENST00000274071 DRD4P21917 467 aa10.17□□□□□ -0.78
PDGFC-201ENST00000274071 PRPF4BQ13523 1007 aaKnown RBP10.17□□□□□ -0.78
PDGFC-201ENST00000274071 FAM133BQ5BKY9 247 aaKnown RBP10.17□□□□□ -0.78
PDGFC-201ENST00000274071 SYNE3Q6ZMZ3 975 aa10.17□□□□□ -0.78
PDGFC-201ENST00000274071 APBB1IPQ7Z5R6 666 aaPredicted RBP10.17□□□□□ -0.78
PDGFC-201ENST00000274071 LONP2Q86WA8 852 aa10.17□□□□□ -0.78
PDGFC-201ENST00000274071 RNF168Q8IYW5 571 aaPredicted RBP10.17□□□□□ -0.78
PDGFC-201ENST00000274071 NOC3LQ8WTT2 800 aaKnown RBP10.17□□□□□ -0.78
PDGFC-201ENST00000274071 IFIT3O14879 490 aaKnown RBP10.17□□□□□ -0.78
PDGFC-201ENST00000274071 FLOT1O75955 427 aa10.17□□□□□ -0.78
PDGFC-201ENST00000274071 MATR3P43243 847 aaKnown RBP eCLIP10.17□□□□□ -0.78
PDGFC-201ENST00000274071 KLC1Q07866 573 aa10.17□□□□□ -0.78
PDGFC-201ENST00000274071 PPARAQ07869 468 aa10.17□□□□□ -0.78
PDGFC-201ENST00000274071 CBX3Q13185 183 aa10.17□□□□□ -0.78
PDGFC-201ENST00000274071 IFI16Q16666 785 aaKnown RBP10.17□□□□□ -0.78
PDGFC-201ENST00000274071 CYP26C1Q6V0L0 522 aa10.17□□□□□ -0.78
PDGFC-201ENST00000274071 CREG2Q8IUH2 290 aa10.17□□□□□ -0.78
PDGFC-201ENST00000274071 SSH3Q8TE77 659 aa10.17□□□□□ -0.78
PDGFC-201ENST00000274071 SPIRE2Q8WWL2 714 aa10.17□□□□□ -0.78
PDGFC-201ENST00000274071 CCDC51Q96ER9 411 aa10.17□□□□□ -0.78
PDGFC-201ENST00000274071 TRAPPC9Q96Q05 1148 aa10.17□□□□□ -0.78
PDGFC-201ENST00000274071 IWS1Q96ST2 819 aa10.17□□□□□ -0.78
PDGFC-201ENST00000274071 LRRC2Q9BYS8 371 aa10.17□□□□□ -0.78
PDGFC-201ENST00000274071 HAUS4Q9H6D7 363 aa10.17□□□□□ -0.78
PDGFC-201ENST00000274071 JADE2Q9NQC1 790 aa10.17□□□□□ -0.78
PDGFC-201ENST00000274071 PFDN1O60925 122 aa10.17□□□□□ -0.78
PDGFC-201ENST00000274071 MARCKSP29966 332 aaPredicted RBP10.17□□□□□ -0.78
PDGFC-201ENST00000274071 SEPT2Q15019 361 aa10.17□□□□□ -0.78
PDGFC-201ENST00000274071 SLC9C2Q5TAH2 1124 aa10.17□□□□□ -0.78
PDGFC-201ENST00000274071 CCDC80Q76M96 950 aa10.17□□□□□ -0.78
PDGFC-201ENST00000274071 SPATA4Q8NEY3 305 aa10.17□□□□□ -0.78
PDGFC-201ENST00000274071 LTV1Q96GA3 475 aaPredicted RBP10.17□□□□□ -0.78
PDGFC-201ENST00000274071 DHRS1Q96LJ7 313 aa10.17□□□□□ -0.78
PDGFC-201ENST00000274071 TMBIM4Q9HC24 238 aa10.17□□□□□ -0.78
PDGFC-201ENST00000274071 ABHD10Q9NUJ1 306 aa10.17□□□□□ -0.78
PDGFC-201ENST00000274071 TBC1D7Q9P0N9 293 aa10.17□□□□□ -0.78
PDGFC-201ENST00000274071 ZMYND8Q9ULU4 1186 aaPredicted RBP10.17□□□□□ -0.78
PDGFC-201ENST00000274071 BARX2Q9UMQ3 279 aaPredicted RBP10.17□□□□□ -0.78
PDGFC-201ENST00000274071 HPSEQ9Y251 543 aa10.17□□□□□ -0.78
PDGFC-201ENST00000274071 EPN1Q9Y6I3 576 aaPredicted RBP10.17□□□□□ -0.78
PDGFC-201ENST00000274071 MARF1Q9Y4F3 1742 aaKnown RBP10.17□□□□□ -0.78
PDGFC-201ENST00000274071 GSTT1P30711 240 aa10.16□□□□□ -0.78
PDGFC-201ENST00000274071 VAV2P52735 878 aa10.16□□□□□ -0.78
PDGFC-201ENST00000274071 NMIQ13287 307 aaPredicted RBP10.16□□□□□ -0.78
PDGFC-201ENST00000274071 SDR16C5Q8N3Y7 309 aa10.16□□□□□ -0.78
PDGFC-201ENST00000274071 CCDC197Q8NCU1 140 aa10.16□□□□□ -0.78
PDGFC-201ENST00000274071 CHP1Q99653 195 aa10.16□□□□□ -0.78
PDGFC-201ENST00000274071 FOXN1O15353 648 aa10.16□□□□□ -0.78
PDGFC-201ENST00000274071 NDUFA10O95299 355 aa10.16□□□□□ -0.78
PDGFC-201ENST00000274071 PAEPP09466 180 aa10.16□□□□□ -0.78
PDGFC-201ENST00000274071 ATP6V1C1P21283 382 aa10.16□□□□□ -0.78
PDGFC-201ENST00000274071 USP46P62068 366 aa10.16□□□□□ -0.78
PDGFC-201ENST00000274071 SF3A3Q12874 501 aaKnown RBP eCLIP10.16□□□□□ -0.78
PDGFC-201ENST00000274071 CCDC122Q5T0U0 273 aa10.16□□□□□ -0.78
PDGFC-201ENST00000274071 OTUD7BQ6GQQ9 843 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms