RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 PPFIA3O75145 1194 aa14.79□□□□□ -0.04
SS18-202ENST00000269138 LARGE1O95461 756 aa14.79□□□□□ -0.04
SS18-202ENST00000269138 PRMT2P55345 433 aa14.79□□□□□ -0.04
SS18-202ENST00000269138 KCTD2Q14681 263 aa14.79□□□□□ -0.04
SS18-202ENST00000269138 ANKRD1Q15327 319 aa14.79□□□□□ -0.04
SS18-202ENST00000269138 PKN2Q16513 984 aaKnown RBP14.79□□□□□ -0.04
SS18-202ENST00000269138 ABRAQ8N0Z2 381 aa14.79□□□□□ -0.04
SS18-202ENST00000269138 NPLOC4Q8TAT6 608 aa14.79□□□□□ -0.04
SS18-202ENST00000269138 RAET1EQ8TD07 263 aa14.79□□□□□ -0.04
SS18-202ENST00000269138 SOCS4Q8WXH5 440 aa14.79□□□□□ -0.04
SS18-202ENST00000269138 RRP36Q96EU6 259 aaKnown RBP14.79□□□□□ -0.04
SS18-202ENST00000269138 AMNQ9BXJ7 453 aa14.79□□□□□ -0.04
SS18-202ENST00000269138 ACAD9Q9H845 621 aa14.79□□□□□ -0.04
SS18-202ENST00000269138 CNTNAP5Q8WYK1 1306 aa14.79□□□□□ -0.04
SS18-202ENST00000269138 DTNBO60941 627 aa14.78□□□□□ -0.04
SS18-202ENST00000269138 ELNP15502 786 aa14.78□□□□□ -0.04
SS18-202ENST00000269138 RGS2P41220 211 aa14.78□□□□□ -0.04
SS18-202ENST00000269138 IRF5Q13568 498 aa14.78□□□□□ -0.04
SS18-202ENST00000269138 PPP2R5BQ15173 497 aa14.78□□□□□ -0.04
SS18-202ENST00000269138 RABEP1Q15276 862 aa14.78□□□□□ -0.04
SS18-202ENST00000269138 NTRK3Q16288 839 aa14.78□□□□□ -0.04
SS18-202ENST00000269138 CCL14Q16627 93 aa14.78□□□□□ -0.04
SS18-202ENST00000269138 ME3Q16798 604 aa14.78□□□□□ -0.04
SS18-202ENST00000269138 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.78□□□□□ -0.04
SS18-202ENST00000269138 ANKRD35Q8N283 1001 aa14.78□□□□□ -0.04
SS18-202ENST00000269138 NECAB1Q8N987 351 aa14.78□□□□□ -0.04
SS18-202ENST00000269138 TBC1D5Q92609 795 aa14.78□□□□□ -0.04
SS18-202ENST00000269138 A1CFQ9NQ94 594 aaKnown RBP14.78□□□□□ -0.04
SS18-202ENST00000269138 FBXO40Q9UH90 709 aa14.78□□□□□ -0.04
SS18-202ENST00000269138 PCDHA1Q9Y5I3 950 aa14.78□□□□□ -0.04
SS18-202ENST00000269138 V9GY48 417 aaPredicted RBP14.78□□□□□ -0.04
SS18-202ENST00000269138 PLXNB2O15031 1838 aa14.78□□□□□ -0.04
SS18-202ENST00000269138 CCDC196A0A1B0GTZ2 297 aa14.77□□□□□ -0.04
SS18-202ENST00000269138 ADCY3O60266 1144 aa14.77□□□□□ -0.04
SS18-202ENST00000269138 PFKFB2O60825 505 aa14.77□□□□□ -0.04
SS18-202ENST00000269138 SCRN1Q12765 414 aa14.77□□□□□ -0.04
SS18-202ENST00000269138 NSMFQ6X4W1 530 aa14.77□□□□□ -0.04
SS18-202ENST00000269138 DPP9Q86TI2 863 aa14.77□□□□□ -0.04
SS18-202ENST00000269138 SH3TC2Q8TF17 1288 aa14.77□□□□□ -0.04
SS18-202ENST00000269138 PHKBQ93100 1093 aa14.77□□□□□ -0.04
SS18-202ENST00000269138 DDX11Q96FC9 970 aa14.77□□□□□ -0.04
SS18-202ENST00000269138 PURBQ96QR8 312 aaKnown RBP14.77□□□□□ -0.04
SS18-202ENST00000269138 FLRT1Q9NZU1 646 aa14.77□□□□□ -0.04
SS18-202ENST00000269138 PNMA2Q9UL42 364 aa14.77□□□□□ -0.04
SS18-202ENST00000269138 ABCB11O95342 1321 aa14.77□□□□□ -0.04
SS18-202ENST00000269138 DNAJC25-GNG10A0A024R161 153 aa14.76□□□□□ -0.05
SS18-202ENST00000269138 OPLAHO14841 1288 aa14.76□□□□□ -0.05
SS18-202ENST00000269138 HOXC6P09630 235 aa14.76□□□□□ -0.05
SS18-202ENST00000269138 CNTN2Q02246 1040 aa14.76□□□□□ -0.05
SS18-202ENST00000269138 BAATQ14032 418 aaPredicted RBP14.76□□□□□ -0.05
SS18-202ENST00000269138 ZNF792Q3KQV3 632 aa14.76□□□□□ -0.05
SS18-202ENST00000269138 APBA2Q99767 749 aa14.76□□□□□ -0.05
SS18-202ENST00000269138 SLKQ9H2G2 1235 aaPredicted RBP14.76□□□□□ -0.05
SS18-202ENST00000269138 SEC63Q9UGP8 760 aaKnown RBP14.76□□□□□ -0.05
SS18-202ENST00000269138 CD2BP2O95400 341 aaKnown RBP14.76□□□□□ -0.05
SS18-202ENST00000269138 XRCC5P13010 732 aaKnown RBP14.76□□□□□ -0.05
SS18-202ENST00000269138 GRK4P32298 578 aa14.76□□□□□ -0.05
SS18-202ENST00000269138 TRIM32Q13049 653 aa14.76□□□□□ -0.05
SS18-202ENST00000269138 TRIB2Q92519 343 aa14.76□□□□□ -0.05
SS18-202ENST00000269138 GPKOWQ92917 476 aaPredicted RBP eCLIP14.76□□□□□ -0.05
SS18-202ENST00000269138 FGD4Q96M96 766 aa14.76□□□□□ -0.05
SS18-202ENST00000269138 CYP39A1Q9NYL5 469 aa14.76□□□□□ -0.05
SS18-202ENST00000269138 LIMCH1Q9UPQ0 1083 aa14.76□□□□□ -0.05
SS18-202ENST00000269138 MRPL11Q9Y3B7 192 aaKnown RBP14.76□□□□□ -0.05
SS18-202ENST00000269138 PTPDC1A2A3K4 754 aa14.75□□□□□ -0.05
SS18-202ENST00000269138 IFNAR1P17181 557 aa14.75□□□□□ -0.05
SS18-202ENST00000269138 ST3GAL1Q11201 340 aa14.75□□□□□ -0.05
SS18-202ENST00000269138 SLC9C1Q4G0N8 1177 aa14.75□□□□□ -0.05
SS18-202ENST00000269138 SLC30A10Q6XR72 485 aa14.75□□□□□ -0.05
SS18-202ENST00000269138 PXYLP1Q8TE99 480 aa14.75□□□□□ -0.05
SS18-202ENST00000269138 SLC26A6Q9BXS9 759 aa14.75□□□□□ -0.05
SS18-202ENST00000269138 SOWAHBA6NEL2 793 aa14.74□□□□□ -0.05
SS18-202ENST00000269138 POTEB2H3BUK9 544 aa14.74□□□□□ -0.05
SS18-202ENST00000269138 CPLX1O14810 134 aa14.74□□□□□ -0.05
SS18-202ENST00000269138 PRPF3O43395 683 aaKnown RBP14.74□□□□□ -0.05
SS18-202ENST00000269138 CTDNEP1O95476 244 aa14.74□□□□□ -0.05
SS18-202ENST00000269138 MYCP01106 439 aaPredicted RBP14.74□□□□□ -0.05
SS18-202ENST00000269138 CALML3P27482 149 aa14.74□□□□□ -0.05
SS18-202ENST00000269138 RPS6P62753 249 aaKnown RBP14.74□□□□□ -0.05
SS18-202ENST00000269138 PKN1Q16512 942 aa14.74□□□□□ -0.05
SS18-202ENST00000269138 WWC2Q6AWC2 1192 aa14.74□□□□□ -0.05
SS18-202ENST00000269138 RNF207Q6ZRF8 634 aa14.74□□□□□ -0.05
SS18-202ENST00000269138 HEATR3Q7Z4Q2 680 aa14.74□□□□□ -0.05
SS18-202ENST00000269138 TNS4Q8IZW8 715 aa14.74□□□□□ -0.05
SS18-202ENST00000269138 FAM133AQ8N9E0 248 aa14.74□□□□□ -0.05
SS18-202ENST00000269138 SLAIN1Q8ND83 568 aa14.74□□□□□ -0.05
SS18-202ENST00000269138 MAML3Q96JK9 1138 aa14.74□□□□□ -0.05
SS18-202ENST00000269138 DDX49Q9Y6V7 483 aaKnown RBP14.74□□□□□ -0.05
SS18-202ENST00000269138 HTTP42858 3142 aa14.73□□□□□ -0.05
SS18-202ENST00000269138 IGHA2P01877 340 aa14.73□□□□□ -0.05
SS18-202ENST00000269138 TYW1BQ6NUM6 668 aa14.73□□□□□ -0.05
SS18-202ENST00000269138 RGS22Q8NE09 1264 aa14.73□□□□□ -0.05
SS18-202ENST00000269138 GTF3C6Q969F1 213 aa14.73□□□□□ -0.05
SS18-202ENST00000269138 SLC5A4Q9NY91 659 aa14.73□□□□□ -0.05
SS18-202ENST00000269138 COL20A1Q9P218 1284 aa14.73□□□□□ -0.05
SS18-202ENST00000269138 BIN2Q9UBW5 565 aaPredicted RBP14.73□□□□□ -0.05
SS18-202ENST00000269138 ASTN1O14525 1302 aa14.73□□□□□ -0.05
SS18-202ENST00000269138 PFASO15067 1338 aa14.73□□□□□ -0.05
SS18-202ENST00000269138 ZNF236Q9UL36 1845 aa14.73□□□□□ -0.05
SS18-202ENST00000269138 ST18O60284 1047 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms