RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 NID2Q14112 1375 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 AFF2P51816 1311 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 MAP2K7O14733 419 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 MYBL2P10244 700 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 KIF5BP33176 963 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 SLC7A5Q01650 507 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 PTPROQ16827 1216 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 CCDC96Q2M329 555 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 DNAJC21Q5F1R6 531 aaKnown RBP10.22□□□□□ -0.77
MSH4-201ENST00000263187 JAKMIP2Q96AA8 810 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 TMEM51Q9NW97 253 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 CICQ96RK0 1608 aaPredicted RBP10.22□□□□□ -0.77
MSH4-201ENST00000263187 FRMPD2Q68DX3 1309 aaPredicted RBP10.22□□□□□ -0.77
MSH4-201ENST00000263187 PDE2AO00408 941 aaPredicted RBP10.22□□□□□ -0.77
MSH4-201ENST00000263187 PSMA7O14818 248 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 RNASE9P60153 205 aaKnown RBP10.22□□□□□ -0.77
MSH4-201ENST00000263187 ZNF444Q8N0Y2 327 aaPredicted RBP10.22□□□□□ -0.77
MSH4-201ENST00000263187 NOC4LQ9BVI4 516 aaKnown RBP10.22□□□□□ -0.77
MSH4-201ENST00000263187 NHEJ1Q9H9Q4 299 aaPredicted RBP10.22□□□□□ -0.77
MSH4-201ENST00000263187 MLXIPQ9HAP2 919 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 RMND1Q9NWS8 449 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 LRWD1Q9UFC0 647 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 ZNF652Q9Y2D9 606 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 PAPPAQ13219 1627 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 SPATA31A5Q5VU36 1347 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 SPATA31A7Q8IWB4 1347 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 EPHB6O15197 1021 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 SLURP2P0DP57 97 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 SPAG1Q07617 926 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 PPP2R5BQ15173 497 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 VPS72Q15906 364 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 CABP7Q86V35 215 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 GLIS3Q8NEA6 775 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 CCDC148Q8NFR7 591 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 CNOT6LQ96LI5 555 aaKnown RBP10.22□□□□□ -0.77
MSH4-201ENST00000263187 C8orf37Q96NL8 207 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 MMRN2Q9H8L6 949 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 FAM204AQ9H8W3 233 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 TBC1D7Q9P0N9 293 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 RSPH14Q9UHP6 348 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 MAD2L2Q9UI95 211 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 SAR1BQ9Y6B6 198 aa10.22□□□□□ -0.77
MSH4-201ENST00000263187 LRRC10BA6NIK2 292 aa10.21□□□□□ -0.77
MSH4-201ENST00000263187 LGALS16A8MUM7 142 aa10.21□□□□□ -0.77
MSH4-201ENST00000263187 H7C1D1 291 aa10.21□□□□□ -0.77
MSH4-201ENST00000263187 KLRC4O43908 158 aa10.21□□□□□ -0.77
MSH4-201ENST00000263187 SSBP05455 408 aaKnown RBP eCLIP10.21□□□□□ -0.77
MSH4-201ENST00000263187 LONP1P36776 959 aaKnown RBP10.21□□□□□ -0.77
MSH4-201ENST00000263187 NAP1L1P55209 391 aaKnown RBP10.21□□□□□ -0.77
MSH4-201ENST00000263187 APBA1Q02410 837 aa10.21□□□□□ -0.77
MSH4-201ENST00000263187 ARID5AQ03989 594 aa10.21□□□□□ -0.77
MSH4-201ENST00000263187 AMIGO3Q86WK7 504 aa10.21□□□□□ -0.77
MSH4-201ENST00000263187 C2CD5Q86YS7 1000 aa10.21□□□□□ -0.77
MSH4-201ENST00000263187 HDAC7Q8WUI4 952 aa10.21□□□□□ -0.77
MSH4-201ENST00000263187 EXOC1Q9NV70 894 aa10.21□□□□□ -0.77
MSH4-201ENST00000263187 ITGB4P16144 1822 aa10.21□□□□□ -0.77
MSH4-201ENST00000263187 SPATA31A1Q5TZJ5 1347 aa10.21□□□□□ -0.78
MSH4-201ENST00000263187 RASSF10A6NK89 507 aa10.21□□□□□ -0.78
MSH4-201ENST00000263187 KLRF2D3W0D1 207 aa10.21□□□□□ -0.78
MSH4-201ENST00000263187 NCK2O43639 380 aa10.21□□□□□ -0.78
MSH4-201ENST00000263187 RCAN1P53805 252 aa10.21□□□□□ -0.78
MSH4-201ENST00000263187 STIM1Q13586 685 aa10.21□□□□□ -0.78
MSH4-201ENST00000263187 FAM98CQ17RN3 349 aaKnown RBP10.21□□□□□ -0.78
MSH4-201ENST00000263187 TMC4Q7Z404 712 aa10.21□□□□□ -0.78
MSH4-201ENST00000263187 FBXO33Q7Z6M2 555 aa10.21□□□□□ -0.78
MSH4-201ENST00000263187 CCDC51Q96ER9 411 aa10.21□□□□□ -0.78
MSH4-201ENST00000263187 NLRP3Q96P20 1036 aa10.21□□□□□ -0.78
MSH4-201ENST00000263187 DUSP9Q99956 384 aaKnown RBP10.21□□□□□ -0.78
MSH4-201ENST00000263187 TMEM47Q9BQJ4 181 aa10.21□□□□□ -0.78
MSH4-201ENST00000263187 TANGO6Q9C0B7 1094 aa10.21□□□□□ -0.78
MSH4-201ENST00000263187 SEMA3EO15041 775 aa10.2□□□□□ -0.78
MSH4-201ENST00000263187 ATP8B1O43520 1251 aa10.2□□□□□ -0.78
MSH4-201ENST00000263187 IPO7O95373 1038 aaKnown RBP10.2□□□□□ -0.78
MSH4-201ENST00000263187 CALML3P27482 149 aa10.2□□□□□ -0.78
MSH4-201ENST00000263187 AMPD2Q01433 879 aa10.2□□□□□ -0.78
MSH4-201ENST00000263187 NFIXQ14938 502 aa10.2□□□□□ -0.78
MSH4-201ENST00000263187 WHAMMP3Q1A5X7 153 aa10.2□□□□□ -0.78
MSH4-201ENST00000263187 SETDB2Q96T68 719 aa10.2□□□□□ -0.78
MSH4-201ENST00000263187 ZNHIT6Q9NWK9 470 aaKnown RBP10.2□□□□□ -0.78
MSH4-201ENST00000263187 ITIH6Q6UXX5 1313 aa10.2□□□□□ -0.78
MSH4-201ENST00000263187 SMCO2A6NFE2 343 aa10.2□□□□□ -0.78
MSH4-201ENST00000263187 F8W031 263 aaPredicted RBP10.2□□□□□ -0.78
MSH4-201ENST00000263187 TULP1O00294 542 aaPredicted RBP10.2□□□□□ -0.78
MSH4-201ENST00000263187 MOCS3O95396 460 aa10.2□□□□□ -0.78
MSH4-201ENST00000263187 CACNB1Q02641 598 aaPredicted RBP10.2□□□□□ -0.78
MSH4-201ENST00000263187 LEKR1Q6ZMV7 388 aa10.2□□□□□ -0.78
MSH4-201ENST00000263187 POTEDQ86YR6 584 aa10.2□□□□□ -0.78
MSH4-201ENST00000263187 MSANTD4Q8NCY6 345 aa10.2□□□□□ -0.78
MSH4-201ENST00000263187 COA7Q96BR5 231 aa10.2□□□□□ -0.78
MSH4-201ENST00000263187 TCP11L1Q9NUJ3 509 aa10.2□□□□□ -0.78
MSH4-201ENST00000263187 POTEMA6NI47 508 aa10.2□□□□□ -0.78
MSH4-201ENST00000263187 GNPATO15228 680 aa10.2□□□□□ -0.78
MSH4-201ENST00000263187 BUB1O43683 1085 aa10.2□□□□□ -0.78
MSH4-201ENST00000263187 ORC4O43929 436 aa10.2□□□□□ -0.78
MSH4-201ENST00000263187 EIF3JO75822 258 aaKnown RBP10.2□□□□□ -0.78
MSH4-201ENST00000263187 LDHBP07195 334 aaKnown RBP10.2□□□□□ -0.78
MSH4-201ENST00000263187 TTI2Q6NXR4 508 aa10.2□□□□□ -0.78
MSH4-201ENST00000263187 DNAAF5Q86Y56 855 aa10.2□□□□□ -0.78
MSH4-201ENST00000263187 CCDC42Q96M95 316 aa10.2□□□□□ -0.78
MSH4-201ENST00000263187 PIGSQ96S52 555 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms