RNA–Protein interactions for RNA: ENST00000262539.7

PTPN3-201, Transcript of protein tyrosine phosphatase, non-receptor type 3, humanhuman

TSL 5 BASIC

Gene PTPN3, Length 6,832 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN3-201ENST00000262539 GMCL1P1Q8NEA9 526 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 MMRN2Q9H8L6 949 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 MKRN1Q9UHC7 482 aaKnown RBP9.17□□□□□ -0.94
PTPN3-201ENST00000262539 ZNF831Q5JPB2 1677 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 VWA3AA6NCI4 1184 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 SKILP12757 684 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 CCNE1P24864 410 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 CBX1P83916 185 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 FAM47AQ5JRC9 791 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 EXOC8Q8IYI6 725 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 FUCA2Q9BTY2 467 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 TIPINQ9BVW5 301 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 CCDC113Q9H0I3 377 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 KCNJ14Q9UNX9 436 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 ARL1P40616 181 aaPredicted RBP9.17□□□□□ -0.94
PTPN3-201ENST00000262539 RHBDL3P58872 404 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 CACNA2D4Q7Z3S7 1137 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 NLRX1Q86UT6 975 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 CABP7Q86V35 215 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 KIAA0825Q8IV33 1275 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP9.17□□□□□ -0.94
PTPN3-201ENST00000262539 FANCCQ00597 558 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 SYNCQ9H7C4 482 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 SEL1LQ9UBV2 794 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 NR1I2O75469 434 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 LRRC63Q05C16 580 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 NCBP1Q09161 790 aaKnown RBP9.17□□□□□ -0.94
PTPN3-201ENST00000262539 CALCRLQ16602 461 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 LETM2Q2VYF4 491 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 SPECC1LQ69YQ0 1117 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 HOOK3Q86VS8 718 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 OTUD6BQ8N6M0 293 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 MTMR14Q8NCE2 650 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 FAM81BQ96LP2 452 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 CSRNP1Q96S65 589 aa9.17□□□□□ -0.94
PTPN3-201ENST00000262539 RPGRIP1Q96KN7 1286 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 FERMT1Q9BQL6 677 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 WDR46O15213 610 aaKnown RBP9.16□□□□□ -0.94
PTPN3-201ENST00000262539 TBC1D12O60347 775 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 IFI16Q16666 785 aaKnown RBP9.16□□□□□ -0.94
PTPN3-201ENST00000262539 RDM1Q8NG50 284 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 LRRC45Q96CN5 670 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 LTBP3Q9NS15 1303 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 CETN3O15182 167 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 ERLIN1O75477 346 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 IDEP14735 1019 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.16□□□□□ -0.94
PTPN3-201ENST00000262539 MYPNQ86TC9 1320 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 CRYBG1Q9Y4K1 1723 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 COL2A1P02458 1487 aaPredicted RBP9.16□□□□□ -0.94
PTPN3-201ENST00000262539 GOLGA6L7A0A1B0GV03 622 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 GSTTP1A0A1W2PQM5 241 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 GCOM1H8Y6P7 765 aaPredicted RBP9.16□□□□□ -0.94
PTPN3-201ENST00000262539 MAFGO15525 162 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 POLR2MP0CAP2 368 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 GUF1Q8N442 669 aaKnown RBP9.16□□□□□ -0.94
PTPN3-201ENST00000262539 TSNARE1Q96NA8 513 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 LARSQ9P2J5 1176 aaKnown RBP9.16□□□□□ -0.94
PTPN3-201ENST00000262539 CGNQ9P2M7 1197 aaKnown RBP9.16□□□□□ -0.94
PTPN3-201ENST00000262539 FEM1BQ9UK73 627 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 NOD1Q9Y239 953 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 COL4A3BPQ9Y5P4 624 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 C19orf81C9J6K1 198 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 POLR2DO15514 142 aaKnown RBP9.16□□□□□ -0.94
PTPN3-201ENST00000262539 LPXNO60711 386 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 RXRAP19793 462 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 NDUFA8P51970 172 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 ZNF174Q15697 407 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 PPP1R2P3Q6NXS1 205 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 RSBN1LQ6PCB5 846 aaPredicted RBP9.16□□□□□ -0.94
PTPN3-201ENST00000262539 DPH6Q7L8W6 267 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 SNX29Q8TEQ0 813 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 GPHNQ9NQX3 736 aaPredicted RBP9.16□□□□□ -0.94
PTPN3-201ENST00000262539 PICK1Q9NRD5 415 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 FAM217BQ9NTX9 383 aaPredicted RBP9.16□□□□□ -0.94
PTPN3-201ENST00000262539 FBXO2Q9UK22 296 aaPredicted RBP9.16□□□□□ -0.94
PTPN3-201ENST00000262539 SYNRGQ9UMZ2 1314 aa9.16□□□□□ -0.94
PTPN3-201ENST00000262539 UQCRHP07919 91 aa9.15□□□□□ -0.94
PTPN3-201ENST00000262539 LRRC4BQ9NT99 713 aa9.15□□□□□ -0.94
PTPN3-201ENST00000262539 RWDD2AQ9UIY3 292 aa9.15□□□□□ -0.94
PTPN3-201ENST00000262539 LUC7L2Q9Y383 392 aaKnown RBP9.15□□□□□ -0.94
PTPN3-201ENST00000262539 PITPNM2Q9BZ72 1349 aa9.15□□□□□ -0.94
PTPN3-201ENST00000262539 SIPA1L3O60292 1781 aaPredicted RBP9.15□□□□□ -0.94
PTPN3-201ENST00000262539 KIF5CO60282 957 aa9.15□□□□□ -0.94
PTPN3-201ENST00000262539 CCDC175P0C221 793 aa9.15□□□□□ -0.94
PTPN3-201ENST00000262539 MTIF2P46199 727 aaKnown RBP9.15□□□□□ -0.94
PTPN3-201ENST00000262539 GNPTABQ3T906 1256 aa9.15□□□□□ -0.94
PTPN3-201ENST00000262539 DACT2Q5SW24 774 aa9.15□□□□□ -0.94
PTPN3-201ENST00000262539 BTNL9Q6UXG8 535 aa9.15□□□□□ -0.94
PTPN3-201ENST00000262539 RAB11FIP4Q86YS3 637 aa9.15□□□□□ -0.94
PTPN3-201ENST00000262539 CCDC117Q8IWD4 279 aaPredicted RBP9.15□□□□□ -0.94
PTPN3-201ENST00000262539 CEP63Q96MT8 703 aa9.15□□□□□ -0.94
PTPN3-201ENST00000262539 JPH2Q9BR39 696 aaPredicted RBP9.15□□□□□ -0.94
PTPN3-201ENST00000262539 SERTAD1Q9UHV2 236 aa9.15□□□□□ -0.94
PTPN3-201ENST00000262539 EXOC7Q9UPT5 735 aa9.15□□□□□ -0.94
PTPN3-201ENST00000262539 MCM7P33993 719 aa9.15□□□□□ -0.94
PTPN3-201ENST00000262539 GABPAQ06546 454 aa9.15□□□□□ -0.94
PTPN3-201ENST00000262539 PRPF38AQ8NAV1 312 aaKnown RBP9.15□□□□□ -0.94
PTPN3-201ENST00000262539 DISC1Q9NRI5 854 aa9.15□□□□□ -0.94
PTPN3-201ENST00000262539 DNM3Q9UQ16 869 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms