RNA–Protein interactions for RNA: ENST00000247020.8

SDF2-201, Transcript of stromal cell derived factor 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDF2, Length 1,568 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-201ENST00000247020 PNMA2Q9UL42 364 aa16.15■□□□□ 0.18
SDF2-201ENST00000247020 FOSP01100 380 aaPredicted RBP16.14■□□□□ 0.17
SDF2-201ENST00000247020 XRCC6P12956 609 aaKnown RBP eCLIP16.14■□□□□ 0.17
SDF2-201ENST00000247020 GCFC2P16383 781 aaKnown RBP16.14■□□□□ 0.17
SDF2-201ENST00000247020 UVSSAQ2YD98 709 aa16.14■□□□□ 0.17
SDF2-201ENST00000247020 JAKMIP3Q5VZ66 844 aa16.14■□□□□ 0.17
SDF2-201ENST00000247020 KANK3Q6NY19 840 aa16.14■□□□□ 0.17
SDF2-201ENST00000247020 SASS6Q6UVJ0 657 aa16.14■□□□□ 0.17
SDF2-201ENST00000247020 CCDC34Q96HJ3 373 aa16.14■□□□□ 0.17
SDF2-201ENST00000247020 SDF4Q9BRK5 362 aa16.14■□□□□ 0.17
SDF2-201ENST00000247020 GLIS2Q9BZE0 524 aaPredicted RBP16.14■□□□□ 0.17
SDF2-201ENST00000247020 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.14■□□□□ 0.17
SDF2-201ENST00000247020 USP25Q9UHP3 1055 aa16.14■□□□□ 0.17
SDF2-201ENST00000247020 HOOK1Q9UJC3 728 aaKnown RBP16.14■□□□□ 0.17
SDF2-201ENST00000247020 IQCA1LA6NCM1 817 aa16.13■□□□□ 0.17
SDF2-201ENST00000247020 C19orf81C9J6K1 198 aa16.13■□□□□ 0.17
SDF2-201ENST00000247020 PIK3CDO00329 1044 aa16.13■□□□□ 0.17
SDF2-201ENST00000247020 PTPRAP18433 802 aa16.13■□□□□ 0.17
SDF2-201ENST00000247020 BACE1P56817 501 aa16.13■□□□□ 0.17
SDF2-201ENST00000247020 TYRO3Q06418 890 aa16.13■□□□□ 0.17
SDF2-201ENST00000247020 PPP4R3AQ6IN85 833 aa16.13■□□□□ 0.17
SDF2-201ENST00000247020 ZNF280CQ8ND82 737 aa16.13■□□□□ 0.17
SDF2-201ENST00000247020 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.13■□□□□ 0.17
SDF2-201ENST00000247020 RBSNQ9H1K0 784 aa16.13■□□□□ 0.17
SDF2-201ENST00000247020 PTPRFP10586 1907 aa16.13■□□□□ 0.17
SDF2-201ENST00000247020 GRIN1Q05586 938 aa16.13■□□□□ 0.17
SDF2-201ENST00000247020 MOXD1Q6UVY6 613 aa16.13■□□□□ 0.17
SDF2-201ENST00000247020 KRBA2Q6ZNG9 492 aa16.13■□□□□ 0.17
SDF2-201ENST00000247020 CKAP2LQ8IYA6 745 aa16.13■□□□□ 0.17
SDF2-201ENST00000247020 PRPF38AQ8NAV1 312 aaKnown RBP16.13■□□□□ 0.17
SDF2-201ENST00000247020 SLF1Q9BQI6 1058 aa16.13■□□□□ 0.17
SDF2-201ENST00000247020 MEIS2O14770 477 aa16.12■□□□□ 0.17
SDF2-201ENST00000247020 PPP1R12BO60237 982 aaPredicted RBP16.12■□□□□ 0.17
SDF2-201ENST00000247020 NEMFO60524 1076 aa16.12■□□□□ 0.17
SDF2-201ENST00000247020 CCNT1O60563 726 aaKnown RBP16.12■□□□□ 0.17
SDF2-201ENST00000247020 OR52Z1P0C646 297 aa16.12■□□□□ 0.17
SDF2-201ENST00000247020 EPHX2P34913 555 aa16.12■□□□□ 0.17
SDF2-201ENST00000247020 USP11P51784 963 aa16.12■□□□□ 0.17
SDF2-201ENST00000247020 ZYXQ15942 572 aaKnown RBP16.12■□□□□ 0.17
SDF2-201ENST00000247020 LETM2Q2VYF4 491 aa16.12■□□□□ 0.17
SDF2-201ENST00000247020 DTHD1Q6ZMT9 781 aa16.12■□□□□ 0.17
SDF2-201ENST00000247020 AK8Q96MA6 479 aa16.12■□□□□ 0.17
SDF2-201ENST00000247020 TMEM260Q9NX78 707 aa16.12■□□□□ 0.17
SDF2-201ENST00000247020 KIAA1468Q9P260 1216 aa16.12■□□□□ 0.17
SDF2-201ENST00000247020 MRPL11Q9Y3B7 192 aaKnown RBP16.12■□□□□ 0.17
SDF2-201ENST00000247020 ABCB11O95342 1321 aa16.12■□□□□ 0.17
SDF2-201ENST00000247020 RLFQ13129 1914 aa16.11■□□□□ 0.17
SDF2-201ENST00000247020 VWA3AA6NCI4 1184 aa16.11■□□□□ 0.17
SDF2-201ENST00000247020 USP2O75604 605 aaPredicted RBP16.11■□□□□ 0.17
SDF2-201ENST00000247020 NF2P35240 595 aa16.11■□□□□ 0.17
SDF2-201ENST00000247020 TXLNAP40222 546 aa16.11■□□□□ 0.17
SDF2-201ENST00000247020 UBE2SQ16763 222 aa16.11■□□□□ 0.17
SDF2-201ENST00000247020 CCDC84Q86UT8 332 aaPredicted RBP16.11■□□□□ 0.17
SDF2-201ENST00000247020 CNNM3Q8NE01 707 aa16.11■□□□□ 0.17
SDF2-201ENST00000247020 SYMPKQ92797 1274 aaKnown RBP16.11■□□□□ 0.17
SDF2-201ENST00000247020 KIFC2Q96AC6 838 aa16.11■□□□□ 0.17
SDF2-201ENST00000247020 ANO3Q9BYT9 981 aa16.11■□□□□ 0.17
SDF2-201ENST00000247020 MRVI1Q9Y6F6 885 aa16.11■□□□□ 0.17
SDF2-201ENST00000247020 LOC285556D6RIA3 1793 aa16.1■□□□□ 0.17
SDF2-201ENST00000247020 VCAM1P19320 739 aa16.1■□□□□ 0.17
SDF2-201ENST00000247020 MAP3K9P80192 1104 aa16.1■□□□□ 0.17
SDF2-201ENST00000247020 MTMR2Q13614 643 aa16.1■□□□□ 0.17
SDF2-201ENST00000247020 STX1AQ16623 288 aa16.1■□□□□ 0.17
SDF2-201ENST00000247020 PRAMEF18Q5VWM3 479 aa16.1■□□□□ 0.17
SDF2-201ENST00000247020 KRT26Q7Z3Y9 468 aa16.1■□□□□ 0.17
SDF2-201ENST00000247020 PNMA8AQ86V59 439 aaPredicted RBP16.1■□□□□ 0.17
SDF2-201ENST00000247020 SAMD3Q8N6K7 520 aa16.1■□□□□ 0.17
SDF2-201ENST00000247020 FAM200AQ8TCP9 573 aa16.1■□□□□ 0.17
SDF2-201ENST00000247020 ANP32BQ92688 251 aaKnown RBP16.1■□□□□ 0.17
SDF2-201ENST00000247020 ZKSCAN4Q969J2 545 aaPredicted RBP16.1■□□□□ 0.17
SDF2-201ENST00000247020 EMILIN3Q9NT22 766 aa16.1■□□□□ 0.17
SDF2-201ENST00000247020 ANO10Q9NW15 660 aa16.1■□□□□ 0.17
SDF2-201ENST00000247020 POLR2DO15514 142 aaKnown RBP16.09■□□□□ 0.17
SDF2-201ENST00000247020 ICAM1P05362 532 aa16.09■□□□□ 0.17
SDF2-201ENST00000247020 IREB2P48200 963 aaKnown RBP16.09■□□□□ 0.17
SDF2-201ENST00000247020 SPP2Q13103 211 aa16.09■□□□□ 0.17
SDF2-201ENST00000247020 USH1GQ495M9 461 aa16.09■□□□□ 0.17
SDF2-201ENST00000247020 SH3D19Q5HYK7 790 aa16.09■□□□□ 0.17
SDF2-201ENST00000247020 RBM46Q8TBY0 533 aaKnown RBP16.09■□□□□ 0.17
SDF2-201ENST00000247020 TMEM60Q9H2L4 133 aa16.09■□□□□ 0.17
SDF2-201ENST00000247020 TUBE1Q9UJT0 475 aa16.09■□□□□ 0.17
SDF2-201ENST00000247020 SMCHD1A6NHR9 2005 aa16.09■□□□□ 0.17
SDF2-201ENST00000247020 MYPNQ86TC9 1320 aa16.09■□□□□ 0.17
SDF2-201ENST00000247020 CYP3A7-CYP3A51PA0A087WV96 503 aa16.09■□□□□ 0.17
SDF2-201ENST00000247020 SPDYE3A6NKU9 549 aa16.09■□□□□ 0.17
SDF2-201ENST00000247020 USP17L15C9J2P7 530 aa16.09■□□□□ 0.17
SDF2-201ENST00000247020 USP17L13C9JLJ4 530 aa16.09■□□□□ 0.17
SDF2-201ENST00000247020 USP17L11C9JVI0 530 aa16.09■□□□□ 0.17
SDF2-201ENST00000247020 USP17L18D6R9N7 530 aa16.09■□□□□ 0.17
SDF2-201ENST00000247020 USP17L22D6RA61 530 aa16.09■□□□□ 0.17
SDF2-201ENST00000247020 USP17L17D6RBQ6 530 aa16.09■□□□□ 0.17
SDF2-201ENST00000247020 USP17L19D6RCP7 530 aa16.09■□□□□ 0.17
SDF2-201ENST00000247020 USP17L20D6RJB6 530 aa16.09■□□□□ 0.17
SDF2-201ENST00000247020 CYP3A7P24462 503 aa16.09■□□□□ 0.17
SDF2-201ENST00000247020 USP17L24Q0WX57 530 aa16.09■□□□□ 0.17
SDF2-201ENST00000247020 ZRSR1Q15695 479 aaKnown RBP16.09■□□□□ 0.17
SDF2-201ENST00000247020 IL17AQ16552 155 aa16.09■□□□□ 0.17
SDF2-201ENST00000247020 LONRF3Q496Y0 759 aa16.09■□□□□ 0.17
SDF2-201ENST00000247020 SPECC1Q5M775 1068 aa16.09■□□□□ 0.17
SDF2-201ENST00000247020 USP17L6PQ6QN14 398 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms