RNA–Protein interactions for RNA: ENST00000235958.4

HMGCL-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA lyase, humanhuman

TSL 5

Gene HMGCL, Length 1,101 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCL-201ENST00000235958 HOMER2Q9NSB8 354 aa11.74□□□□□ -0.53
HMGCL-201ENST00000235958 MRPL11Q9Y3B7 192 aaKnown RBP11.74□□□□□ -0.53
HMGCL-201ENST00000235958 THSD7BQ9C0I4 1608 aa11.74□□□□□ -0.53
HMGCL-201ENST00000235958 STXBP3O00186 592 aa11.73□□□□□ -0.53
HMGCL-201ENST00000235958 HMGN5P82970 282 aaKnown RBP11.73□□□□□ -0.53
HMGCL-201ENST00000235958 BECN1Q14457 450 aa11.73□□□□□ -0.53
HMGCL-201ENST00000235958 NOM1Q5C9Z4 860 aaKnown RBP11.73□□□□□ -0.53
HMGCL-201ENST00000235958 WDR78Q5VTH9 848 aa11.73□□□□□ -0.53
HMGCL-201ENST00000235958 WWC2Q6AWC2 1192 aa11.73□□□□□ -0.53
HMGCL-201ENST00000235958 SHCBP1Q8NEM2 672 aa11.73□□□□□ -0.53
HMGCL-201ENST00000235958 CHST13Q8NET6 341 aa11.73□□□□□ -0.53
HMGCL-201ENST00000235958 GPKOWQ92917 476 aaPredicted RBP eCLIP11.73□□□□□ -0.53
HMGCL-201ENST00000235958 INTS4Q96HW7 963 aaKnown RBP11.73□□□□□ -0.53
HMGCL-201ENST00000235958 FOXD4L1Q9NU39 408 aa11.73□□□□□ -0.53
HMGCL-201ENST00000235958 BARHL2Q9NY43 387 aa11.73□□□□□ -0.53
HMGCL-201ENST00000235958 SMC3Q9UQE7 1217 aa11.73□□□□□ -0.53
HMGCL-201ENST00000235958 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.73□□□□□ -0.53
HMGCL-201ENST00000235958 ABCB11O95342 1321 aa11.72□□□□□ -0.53
HMGCL-201ENST00000235958 STK36Q9NRP7 1315 aa11.72□□□□□ -0.53
HMGCL-201ENST00000235958 NFIBO00712 420 aa11.72□□□□□ -0.53
HMGCL-201ENST00000235958 STRNO43815 780 aa11.72□□□□□ -0.53
HMGCL-201ENST00000235958 FKTNO75072 461 aa11.72□□□□□ -0.53
HMGCL-201ENST00000235958 CTGFP29279 349 aa11.72□□□□□ -0.53
HMGCL-201ENST00000235958 MAPK4P31152 587 aa11.72□□□□□ -0.53
HMGCL-201ENST00000235958 COPB2P35606 906 aa11.72□□□□□ -0.53
HMGCL-201ENST00000235958 PSMC4P43686 418 aa11.72□□□□□ -0.53
HMGCL-201ENST00000235958 LACTBP83111 547 aaPredicted RBP11.72□□□□□ -0.53
HMGCL-201ENST00000235958 TYW1BQ6NUM6 668 aa11.72□□□□□ -0.53
HMGCL-201ENST00000235958 SPRYD3Q8NCJ5 442 aa11.72□□□□□ -0.53
HMGCL-201ENST00000235958 RGS22Q8NE09 1264 aa11.72□□□□□ -0.53
HMGCL-201ENST00000235958 ZNF296Q8WUU4 475 aaPredicted RBP11.72□□□□□ -0.53
HMGCL-201ENST00000235958 WASF1Q92558 559 aa11.72□□□□□ -0.53
HMGCL-201ENST00000235958 ALG1Q9BT22 464 aa11.72□□□□□ -0.53
HMGCL-201ENST00000235958 SH3GLB2Q9NR46 395 aa11.72□□□□□ -0.53
HMGCL-201ENST00000235958 GJB4Q9NTQ9 266 aa11.72□□□□□ -0.53
HMGCL-201ENST00000235958 RNF146Q9NTX7 359 aa11.72□□□□□ -0.53
HMGCL-201ENST00000235958 FBXO40Q9UH90 709 aa11.72□□□□□ -0.53
HMGCL-201ENST00000235958 CASP8AP2Q9UKL3 1982 aa11.72□□□□□ -0.53
HMGCL-201ENST00000235958 SMCO2A6NFE2 343 aa11.71□□□□□ -0.53
HMGCL-201ENST00000235958 OPLAHO14841 1288 aa11.71□□□□□ -0.53
HMGCL-201ENST00000235958 FOXN1O15353 648 aa11.71□□□□□ -0.53
HMGCL-201ENST00000235958 HSP90AA1P07900 732 aaKnown RBP11.71□□□□□ -0.53
HMGCL-201ENST00000235958 FCER1AP12319 257 aa11.71□□□□□ -0.53
HMGCL-201ENST00000235958 PTPREP23469 700 aa11.71□□□□□ -0.53
HMGCL-201ENST00000235958 GJB2P29033 226 aa11.71□□□□□ -0.53
HMGCL-201ENST00000235958 NAPAP54920 295 aa11.71□□□□□ -0.53
HMGCL-201ENST00000235958 CAP1Q01518 475 aa11.71□□□□□ -0.53
HMGCL-201ENST00000235958 KIF22Q14807 665 aa11.71□□□□□ -0.53
HMGCL-201ENST00000235958 GPR142Q7Z601 462 aa11.71□□□□□ -0.53
HMGCL-201ENST00000235958 PLEKHH3Q7Z736 793 aa11.71□□□□□ -0.53
HMGCL-201ENST00000235958 MCF2L2Q86YR7 1114 aa11.71□□□□□ -0.53
HMGCL-201ENST00000235958 ANKRD35Q8N283 1001 aa11.71□□□□□ -0.53
HMGCL-201ENST00000235958 FAM184AQ8NB25 1140 aa11.71□□□□□ -0.53
HMGCL-201ENST00000235958 SHISA4Q96DD7 197 aa11.71□□□□□ -0.53
HMGCL-201ENST00000235958 TRIM47Q96LD4 638 aa11.71□□□□□ -0.53
HMGCL-201ENST00000235958 ARHGAP39Q9C0H5 1083 aa11.71□□□□□ -0.53
HMGCL-201ENST00000235958 ACAD9Q9H845 621 aa11.71□□□□□ -0.53
HMGCL-201ENST00000235958 PSTPIP2Q9H939 334 aa11.71□□□□□ -0.53
HMGCL-201ENST00000235958 VPS54Q9P1Q0 977 aa11.71□□□□□ -0.53
HMGCL-201ENST00000235958 A0A0G2JMZ2 1700 aa11.71□□□□□ -0.54
HMGCL-201ENST00000235958 hCG_1984214I3L0E3 225 aa11.7□□□□□ -0.54
HMGCL-201ENST00000235958 TNPO2O14787 897 aaKnown RBP11.7□□□□□ -0.54
HMGCL-201ENST00000235958 CFBP00751 764 aa11.7□□□□□ -0.54
HMGCL-201ENST00000235958 HSPA1AP0DMV8 641 aaKnown RBP11.7□□□□□ -0.54
HMGCL-201ENST00000235958 HSPA1BP0DMV9 641 aaKnown RBP11.7□□□□□ -0.54
HMGCL-201ENST00000235958 ANP32AP39687 249 aaKnown RBP11.7□□□□□ -0.54
HMGCL-201ENST00000235958 MRPL12P52815 198 aaKnown RBP11.7□□□□□ -0.54
HMGCL-201ENST00000235958 FCGRTP55899 365 aa11.7□□□□□ -0.54
HMGCL-201ENST00000235958 NLRP5P59047 1200 aa11.7□□□□□ -0.54
HMGCL-201ENST00000235958 BAATQ14032 418 aaPredicted RBP11.7□□□□□ -0.54
HMGCL-201ENST00000235958 NSMFQ6X4W1 530 aa11.7□□□□□ -0.54
HMGCL-201ENST00000235958 ZNF713Q8N859 430 aaPredicted RBP11.7□□□□□ -0.54
HMGCL-201ENST00000235958 CD99L2Q8TCZ2 262 aa11.7□□□□□ -0.54
HMGCL-201ENST00000235958 CCDC12Q8WUD4 166 aaPredicted RBP11.7□□□□□ -0.54
HMGCL-201ENST00000235958 MMP19Q99542 508 aa11.7□□□□□ -0.54
HMGCL-201ENST00000235958 ZMYND12Q9H0C1 365 aa11.7□□□□□ -0.54
HMGCL-201ENST00000235958 CWC22Q9HCG8 908 aaKnown RBP11.7□□□□□ -0.54
HMGCL-201ENST00000235958 A1CFQ9NQ94 594 aaKnown RBP11.7□□□□□ -0.54
HMGCL-201ENST00000235958 GJD2Q9UKL4 321 aa11.7□□□□□ -0.54
HMGCL-201ENST00000235958 KCNJ14Q9UNX9 436 aa11.7□□□□□ -0.54
HMGCL-201ENST00000235958 IVNS1ABPQ9Y6Y0 642 aa11.7□□□□□ -0.54
HMGCL-201ENST00000235958 SLC15A5A6NIM6 579 aa11.69□□□□□ -0.54
HMGCL-201ENST00000235958 MEIS2O14770 477 aa11.69□□□□□ -0.54
HMGCL-201ENST00000235958 ADAMTS3O15072 1205 aa11.69□□□□□ -0.54
HMGCL-201ENST00000235958 COBLO75128 1261 aa11.69□□□□□ -0.54
HMGCL-201ENST00000235958 HSPA8P11142 646 aaKnown RBP11.69□□□□□ -0.54
HMGCL-201ENST00000235958 XBP1P17861 261 aa11.69□□□□□ -0.54
HMGCL-201ENST00000235958 HOXA13P31271 388 aaPredicted RBP11.69□□□□□ -0.54
HMGCL-201ENST00000235958 CTCFP49711 727 aaPredicted RBP11.69□□□□□ -0.54
HMGCL-201ENST00000235958 FOSBP53539 338 aa11.69□□□□□ -0.54
HMGCL-201ENST00000235958 RPS6P62753 249 aaKnown RBP11.69□□□□□ -0.54
HMGCL-201ENST00000235958 KCTD2Q14681 263 aa11.69□□□□□ -0.54
HMGCL-201ENST00000235958 LARP1BQ659C4 914 aaKnown RBP11.69□□□□□ -0.54
HMGCL-201ENST00000235958 USP17L6PQ6QN14 398 aa11.69□□□□□ -0.54
HMGCL-201ENST00000235958 RNF207Q6ZRF8 634 aa11.69□□□□□ -0.54
HMGCL-201ENST00000235958 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.69□□□□□ -0.54
HMGCL-201ENST00000235958 ABRAQ8N0Z2 381 aa11.69□□□□□ -0.54
HMGCL-201ENST00000235958 SAMD3Q8N6K7 520 aa11.69□□□□□ -0.54
HMGCL-201ENST00000235958 FBXO18Q8NFZ0 1043 aa11.69□□□□□ -0.54
HMGCL-201ENST00000235958 ERO1AQ96HE7 468 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms