RNA–Protein interactions for RNA: ENST00000225726.9

CCDC47-201, Transcript of coiled-coil domain containing 47, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC47, Length 3,466 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-201ENST00000225726 PDILTQ8N807 584 aa16.9■□□□□ 0.3
CCDC47-201ENST00000225726 A0A087X0B3 334 aa16.89■□□□□ 0.29
CCDC47-201ENST00000225726 POSTNQ15063 836 aa16.89■□□□□ 0.29
CCDC47-201ENST00000225726 UBE2SQ16763 222 aa16.89■□□□□ 0.29
CCDC47-201ENST00000225726 TRIM44Q96DX7 344 aaPredicted RBP16.89■□□□□ 0.29
CCDC47-201ENST00000225726 NEMFO60524 1076 aa16.89■□□□□ 0.29
CCDC47-201ENST00000225726 PLA2G6O60733 806 aa16.89■□□□□ 0.29
CCDC47-201ENST00000225726 FAM83BQ5T0W9 1011 aa16.89■□□□□ 0.29
CCDC47-201ENST00000225726 HOOK2Q96ED9 719 aa16.89■□□□□ 0.29
CCDC47-201ENST00000225726 FRMD4AQ9P2Q2 1039 aaPredicted RBP16.89■□□□□ 0.29
CCDC47-201ENST00000225726 PRR12Q9ULL5 1215 aa16.89■□□□□ 0.29
CCDC47-201ENST00000225726 CTNND1O60716 968 aaKnown RBP16.89■□□□□ 0.29
CCDC47-201ENST00000225726 OR52Z1P0C646 297 aa16.89■□□□□ 0.29
CCDC47-201ENST00000225726 SLFN14P0C7P3 912 aa16.89■□□□□ 0.29
CCDC47-201ENST00000225726 DHX58Q96C10 678 aa16.89■□□□□ 0.29
CCDC47-201ENST00000225726 BPIFA3Q9BQP9 254 aa16.89■□□□□ 0.29
CCDC47-201ENST00000225726 A0A087WWV3 80 aa16.88■□□□□ 0.29
CCDC47-201ENST00000225726 TXLNAP40222 546 aa16.88■□□□□ 0.29
CCDC47-201ENST00000225726 DCAF15Q66K64 600 aa16.88■□□□□ 0.29
CCDC47-201ENST00000225726 ADCY5O95622 1261 aa16.88■□□□□ 0.29
CCDC47-201ENST00000225726 TRAF1Q13077 416 aa16.88■□□□□ 0.29
CCDC47-201ENST00000225726 MCTP2Q6DN12 878 aa16.88■□□□□ 0.29
CCDC47-201ENST00000225726 TRPM4Q8TD43 1214 aa16.88■□□□□ 0.29
CCDC47-201ENST00000225726 CHURC1Q8WUH1 139 aa16.88■□□□□ 0.29
CCDC47-201ENST00000225726 BIN1O00499 593 aa16.87■□□□□ 0.29
CCDC47-201ENST00000225726 FOXN1O15353 648 aa16.87■□□□□ 0.29
CCDC47-201ENST00000225726 DPCR1Q3MIW9 517 aa16.87■□□□□ 0.29
CCDC47-201ENST00000225726 FAM160B2Q86V87 743 aa16.87■□□□□ 0.29
CCDC47-201ENST00000225726 DOCK1Q14185 1865 aa16.87■□□□□ 0.29
CCDC47-201ENST00000225726 SNAP25P60880 206 aa16.87■□□□□ 0.29
CCDC47-201ENST00000225726 ANGEL2Q5VTE6 544 aaKnown RBP16.87■□□□□ 0.29
CCDC47-201ENST00000225726 PCDHA5Q9Y5H7 936 aa16.87■□□□□ 0.29
CCDC47-201ENST00000225726 NBPF12Q5TAG4 269 aaPredicted RBP16.87■□□□□ 0.29
CCDC47-201ENST00000225726 NT5DC1Q5TFE4 455 aa16.87■□□□□ 0.29
CCDC47-201ENST00000225726 SH3RF1Q7Z6J0 888 aa16.87■□□□□ 0.29
CCDC47-201ENST00000225726 NAP1L4Q99733 375 aaKnown RBP16.87■□□□□ 0.29
CCDC47-201ENST00000225726 ZNF341Q9BYN7 854 aa16.87■□□□□ 0.29
CCDC47-201ENST00000225726 FEM1BQ9UK73 627 aa16.87■□□□□ 0.29
CCDC47-201ENST00000225726 GOLGA6L19H0YKK7 550 aa16.86■□□□□ 0.29
CCDC47-201ENST00000225726 E2F4Q16254 413 aa16.86■□□□□ 0.29
CCDC47-201ENST00000225726 DHX40Q8IX18 779 aaKnown RBP16.86■□□□□ 0.29
CCDC47-201ENST00000225726 IQUBQ8NA54 791 aa16.86■□□□□ 0.29
CCDC47-201ENST00000225726 AK8Q96MA6 479 aa16.86■□□□□ 0.29
CCDC47-201ENST00000225726 SYT17Q9BSW7 474 aa16.86■□□□□ 0.29
CCDC47-201ENST00000225726 GLIS2Q9BZE0 524 aaPredicted RBP16.86■□□□□ 0.29
CCDC47-201ENST00000225726 PPP2R3BQ9Y5P8 575 aa16.86■□□□□ 0.29
CCDC47-201ENST00000225726 PRR29P0C7W0 189 aa16.86■□□□□ 0.29
CCDC47-201ENST00000225726 AP3B2Q13367 1082 aa16.86■□□□□ 0.29
CCDC47-201ENST00000225726 ZYXQ15942 572 aaKnown RBP16.86■□□□□ 0.29
CCDC47-201ENST00000225726 AP5Z1O43299 807 aa16.86■□□□□ 0.29
CCDC47-201ENST00000225726 HS1BP3Q53T59 392 aa16.86■□□□□ 0.29
CCDC47-201ENST00000225726 PPP4R3AQ6IN85 833 aa16.86■□□□□ 0.29
CCDC47-201ENST00000225726 SMARCE1Q969G3 411 aa16.86■□□□□ 0.29
CCDC47-201ENST00000225726 FEZ1Q99689 392 aa16.86■□□□□ 0.29
CCDC47-201ENST00000225726 BECN2A8MW95 431 aa16.85■□□□□ 0.29
CCDC47-201ENST00000225726 EDIL3O43854 480 aa16.85■□□□□ 0.29
CCDC47-201ENST00000225726 SARSP49591 514 aaKnown RBP16.85■□□□□ 0.29
CCDC47-201ENST00000225726 TEX2Q8IWB9 1127 aa16.85■□□□□ 0.29
CCDC47-201ENST00000225726 PAGE5Q96GU1 130 aa16.85■□□□□ 0.29
CCDC47-201ENST00000225726 RANBP17Q9H2T7 1088 aaKnown RBP16.85■□□□□ 0.29
CCDC47-201ENST00000225726 SMC2O95347 1197 aa16.85■□□□□ 0.29
CCDC47-201ENST00000225726 GCFC2P16383 781 aaKnown RBP16.85■□□□□ 0.29
CCDC47-201ENST00000225726 PLCB2Q00722 1185 aa16.85■□□□□ 0.29
CCDC47-201ENST00000225726 USH1GQ495M9 461 aa16.85■□□□□ 0.29
CCDC47-201ENST00000225726 CCDC84Q86UT8 332 aaPredicted RBP16.85■□□□□ 0.29
CCDC47-201ENST00000225726 POTEDQ86YR6 584 aa16.85■□□□□ 0.29
CCDC47-201ENST00000225726 GRAMD1CQ8IYS0 662 aa16.85■□□□□ 0.29
CCDC47-201ENST00000225726 CCSER1Q9C0I3 900 aa16.85■□□□□ 0.29
CCDC47-201ENST00000225726 ZNF112Q9UJU3 913 aa16.85■□□□□ 0.29
CCDC47-201ENST00000225726 MYH7BA7E2Y1 1941 aa16.85■□□□□ 0.29
CCDC47-201ENST00000225726 EPS15P42566 896 aa16.84■□□□□ 0.29
CCDC47-201ENST00000225726 MAPK8IP2Q13387 824 aaPredicted RBP16.84■□□□□ 0.29
CCDC47-201ENST00000225726 AOPEPQ8N6M6 819 aa16.84■□□□□ 0.29
CCDC47-201ENST00000225726 TRIML1Q8N9V2 468 aa16.84■□□□□ 0.29
CCDC47-201ENST00000225726 SPATA20Q8TB22 786 aa16.84■□□□□ 0.29
CCDC47-201ENST00000225726 MTMR9Q96QG7 549 aa16.84■□□□□ 0.29
CCDC47-201ENST00000225726 KIAA1683Q9H0B3 1180 aa16.84■□□□□ 0.29
CCDC47-201ENST00000225726 MAN1B1Q9UKM7 699 aa16.84■□□□□ 0.29
CCDC47-201ENST00000225726 USP17L15C9J2P7 530 aa16.84■□□□□ 0.29
CCDC47-201ENST00000225726 USP17L13C9JLJ4 530 aa16.84■□□□□ 0.29
CCDC47-201ENST00000225726 USP17L11C9JVI0 530 aa16.84■□□□□ 0.29
CCDC47-201ENST00000225726 USP17L18D6R9N7 530 aa16.84■□□□□ 0.29
CCDC47-201ENST00000225726 USP17L22D6RA61 530 aa16.84■□□□□ 0.29
CCDC47-201ENST00000225726 USP17L17D6RBQ6 530 aa16.84■□□□□ 0.29
CCDC47-201ENST00000225726 USP17L19D6RCP7 530 aa16.84■□□□□ 0.29
CCDC47-201ENST00000225726 USP17L20D6RJB6 530 aa16.84■□□□□ 0.29
CCDC47-201ENST00000225726 MEIS2O14770 477 aa16.84■□□□□ 0.29
CCDC47-201ENST00000225726 USP17L24Q0WX57 530 aa16.84■□□□□ 0.29
CCDC47-201ENST00000225726 CALCRLQ16602 461 aa16.84■□□□□ 0.29
CCDC47-201ENST00000225726 USP17L6PQ6QN14 398 aa16.84■□□□□ 0.29
CCDC47-201ENST00000225726 LPAR1Q92633 364 aa16.84■□□□□ 0.29
CCDC47-201ENST00000225726 GGA3Q9NZ52 723 aa16.84■□□□□ 0.29
CCDC47-201ENST00000225726 TDP2O95551 362 aa16.84■□□□□ 0.29
CCDC47-201ENST00000225726 PDXDC2PQ6P474 469 aa16.84■□□□□ 0.29
CCDC47-201ENST00000225726 ANO3Q9BYT9 981 aa16.84■□□□□ 0.29
CCDC47-201ENST00000225726 RNF181Q9P0P0 153 aa16.84■□□□□ 0.29
CCDC47-201ENST00000225726 KIFC2Q96AC6 838 aa16.83■□□□□ 0.29
CCDC47-201ENST00000225726 DISC1Q9NRI5 854 aa16.83■□□□□ 0.29
CCDC47-201ENST00000225726 WDR46O15213 610 aaKnown RBP16.83■□□□□ 0.28
CCDC47-201ENST00000225726 UBA7P41226 1012 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms