RNA–Protein interactions for RNA: YHR200W

RPN10, Transcript of Non-ATPase base subunit of the 19S RP of the 26S proteasome, yeast

Gene RPN10, Length 807 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RPN10	YHR200W	VMA13	P41807	478 aa	Known RBP	13.67	□□□□□ -0.22
RPN10	YHR200W	MIG2	P53035	382 aa		13.67	□□□□□ -0.22
RPN10	YHR200W	ARX1	Q03862	593 aa	Known RBP	13.67	□□□□□ -0.22
RPN10	YHR200W	YIG1	Q08956	461 aa		13.67	□□□□□ -0.22
RPN10	YHR200W	HSH49	Q99181	213 aa	Predicted RBP	13.67	□□□□□ -0.22
RPN10	YHR200W	YAR066W	P0CX18	203 aa		13.66	□□□□□ -0.22
RPN10	YHR200W	YHR214W	P0CX19	203 aa		13.66	□□□□□ -0.22
RPN10	YHR200W	CHL1	P22516	861 aa	Predicted RBP	13.66	□□□□□ -0.22
RPN10	YHR200W	BUB2	P26448	306 aa	Predicted RBP	13.66	□□□□□ -0.22
RPN10	YHR200W	OXP1	P28273	1286 aa		13.66	□□□□□ -0.22
RPN10	YHR200W	CRM1	P30822	1084 aa	Known RBP	13.66	□□□□□ -0.22
RPN10	YHR200W	GMH1	P36125	273 aa		13.66	□□□□□ -0.22
RPN10	YHR200W	YHR020W	P38708	688 aa	Known RBP	13.66	□□□□□ -0.22
RPN10	YHR200W	TIM17	P39515	158 aa		13.66	□□□□□ -0.22
RPN10	YHR200W	LSB3	P43603	459 aa	Known RBP	13.66	□□□□□ -0.22
RPN10	YHR200W	ZRG17	P53735	605 aa		13.66	□□□□□ -0.22
RPN10	YHR200W	SPT23	P35210	1082 aa		13.65	□□□□□ -0.22
RPN10	YHR200W	LRG1	P35688	1017 aa		13.65	□□□□□ -0.22
RPN10	YHR200W	TSC10	P38342	320 aa		13.65	□□□□□ -0.22
RPN10	YHR200W	GIC1	P38785	314 aa		13.65	□□□□□ -0.22
RPN10	YHR200W	FMO1	P38866	432 aa		13.65	□□□□□ -0.22
RPN10	YHR200W	SPF1	P39986	1215 aa	Known RBP	13.65	□□□□□ -0.22
RPN10	YHR200W	YEN1	P40028	759 aa		13.65	□□□□□ -0.22
RPN10	YHR200W	RIF2	Q06208	395 aa		13.65	□□□□□ -0.22
RPN10	YHR200W	OPI10	Q08202	246 aa		13.65	□□□□□ -0.22
RPN10	YHR200W	DIA2	Q08496	732 aa	Predicted RBP	13.65	□□□□□ -0.22
RPN10	YHR200W	YLR049C	Q12110	428 aa		13.65	□□□□□ -0.22
RPN10	YHR200W	SAS5	Q99314	248 aa		13.65	□□□□□ -0.22
RPN10	YHR200W	SUC2	P00724	532 aa		13.64	□□□□□ -0.23
RPN10	YHR200W	COS2	P0CX12	379 aa		13.64	□□□□□ -0.23
RPN10	YHR200W	COS3	P0CX13	379 aa		13.64	□□□□□ -0.23
RPN10	YHR200W	DBR1	P24309	405 aa	Known RBP	13.64	□□□□□ -0.23
RPN10	YHR200W	RFA2	P26754	273 aa	Known RBP	13.64	□□□□□ -0.23
RPN10	YHR200W	NPT1	P39683	429 aa	Known RBP	13.64	□□□□□ -0.23
RPN10	YHR200W	EMP65	P40085	556 aa		13.64	□□□□□ -0.23
RPN10	YHR200W	UTP18	P40362	594 aa	Predicted RBP	13.64	□□□□□ -0.23
RPN10	YHR200W	COS4	P43542	379 aa		13.64	□□□□□ -0.23
RPN10	YHR200W	MTR3	P48240	250 aa	Predicted RBP	13.64	□□□□□ -0.23
RPN10	YHR200W	BIO5	P53744	561 aa	Known RBP	13.64	□□□□□ -0.23
RPN10	YHR200W	REX2	P54964	269 aa	Known RBP	13.64	□□□□□ -0.23
RPN10	YHR200W	ARG7	Q04728	441 aa		13.64	□□□□□ -0.23
RPN10	YHR200W	ESA1	Q08649	445 aa		13.64	□□□□□ -0.23
RPN10	YHR200W	UAF30	Q08747	228 aa		13.64	□□□□□ -0.23
RPN10	YHR200W	GNT1	Q12096	491 aa		13.64	□□□□□ -0.23
RPN10	YHR200W	UPC2	Q12151	913 aa		13.64	□□□□□ -0.23
RPN10	YHR200W	CMR1	Q12510	522 aa	Known RBP	13.64	□□□□□ -0.23
RPN10	YHR200W	BRR1	Q99177	341 aa	Predicted RBP	13.64	□□□□□ -0.23
RPN10	YHR200W	NHA1	Q99271	985 aa		13.64	□□□□□ -0.23
RPN10	YHR200W	TRP3	P00937	484 aa		13.63	□□□□□ -0.23
RPN10	YHR200W	DGR2	P32330	852 aa		13.63	□□□□□ -0.23
RPN10	YHR200W	ALG5	P40350	334 aa		13.63	□□□□□ -0.23
RPN10	YHR200W	FKH2	P41813	862 aa		13.63	□□□□□ -0.23
RPN10	YHR200W	YJR154W	P47181	346 aa		13.63	□□□□□ -0.23
RPN10	YHR200W	TRM12	Q04235	462 aa		13.63	□□□□□ -0.23
RPN10	YHR200W	RPC11	Q04307	110 aa	Predicted RBP	13.63	□□□□□ -0.23
RPN10	YHR200W	EMI1	Q04406	187 aa		13.63	□□□□□ -0.23
RPN10	YHR200W	BCP1	Q06338	283 aa		13.63	□□□□□ -0.23
RPN10	YHR200W	YPR202W	Q08993	238 aa		13.63	□□□□□ -0.23
RPN10	YHR200W	SWI5	P08153	709 aa		13.62	□□□□□ -0.23
RPN10	YHR200W	MET8	P15807	274 aa		13.62	□□□□□ -0.23
RPN10	YHR200W	UBA4	P38820	440 aa		13.62	□□□□□ -0.23
RPN10	YHR200W	IAH1	P41734	238 aa		13.62	□□□□□ -0.23
RPN10	YHR200W	GCD10	P41814	478 aa		13.62	□□□□□ -0.23
RPN10	YHR200W	GAT1	P43574	510 aa		13.62	□□□□□ -0.23
RPN10	YHR200W	BIR1	P47134	954 aa		13.62	□□□□□ -0.23
RPN10	YHR200W	ILM1	P47155	203 aa		13.62	□□□□□ -0.23
RPN10	YHR200W	YNL260C	P53846	198 aa		13.62	□□□□□ -0.23
RPN10	YHR200W	AQR1	P53943	586 aa		13.62	□□□□□ -0.23
RPN10	YHR200W	GAS3	Q03655	524 aa		13.62	□□□□□ -0.23
RPN10	YHR200W	HPF1	Q05164	967 aa		13.62	□□□□□ -0.23
RPN10	YHR200W	OSW1	Q08692	278 aa		13.62	□□□□□ -0.23
RPN10	YHR200W	RRP42	Q12277	265 aa	Predicted RBP	13.62	□□□□□ -0.23
RPN10	YHR200W	AI3	P03877	415 aa		13.61	□□□□□ -0.23
RPN10	YHR200W	GUK1	P15454	187 aa	Known RBP	13.61	□□□□□ -0.23
RPN10	YHR200W	DSF2	P38213	736 aa		13.61	□□□□□ -0.23
RPN10	YHR200W	TAE1	P38340	232 aa		13.61	□□□□□ -0.23
RPN10	YHR200W	PIK1	P39104	1066 aa		13.61	□□□□□ -0.23
RPN10	YHR200W	ARB1	P40024	610 aa	Known RBP	13.61	□□□□□ -0.23
RPN10	YHR200W	LSM5	P40089	93 aa	Known RBP	13.61	□□□□□ -0.23
RPN10	YHR200W	IMA1	P53051	589 aa		13.61	□□□□□ -0.23
RPN10	YHR200W	YGR053C	P53234	283 aa		13.61	□□□□□ -0.23
RPN10	YHR200W	COG2	P53271	262 aa		13.61	□□□□□ -0.23
RPN10	YHR200W	ARC35	P53731	342 aa	Known RBP	13.61	□□□□□ -0.23
RPN10	YHR200W	ATG10	Q07879	167 aa		13.61	□□□□□ -0.23
RPN10	YHR200W	GPN2	Q08726	347 aa	Predicted RBP	13.61	□□□□□ -0.23
RPN10	YHR200W	NSL1	Q12143	216 aa		13.61	□□□□□ -0.23
RPN10	YHR200W	UBR1	P19812	1950 aa		13.6	□□□□□ -0.23
RPN10	YHR200W	CDC21	P06785	304 aa		13.6	□□□□□ -0.23
RPN10	YHR200W	SPT15	P13393	240 aa	Known RBP	13.6	□□□□□ -0.23
RPN10	YHR200W	RSC6	P25632	483 aa		13.6	□□□□□ -0.23
RPN10	YHR200W	TRM5	P38793	499 aa		13.6	□□□□□ -0.23
RPN10	YHR200W	MET18	P40469	1032 aa		13.6	□□□□□ -0.23
RPN10	YHR200W	COQ5	P49017	307 aa		13.6	□□□□□ -0.23
RPN10	YHR200W	NAS6	P50086	228 aa		13.6	□□□□□ -0.23
RPN10	YHR200W	SNX3	Q08826	162 aa	Known RBP	13.6	□□□□□ -0.23
RPN10	YHR200W	SPT3	P06844	337 aa		13.59	□□□□□ -0.23
RPN10	YHR200W	VPS34	P22543	875 aa		13.59	□□□□□ -0.23
RPN10	YHR200W	PHO91	P27514	894 aa		13.59	□□□□□ -0.23
RPN10	YHR200W	MLS1	P30952	554 aa		13.59	□□□□□ -0.23
RPN10	YHR200W	CBF5	P33322	483 aa	Known RBP RIP-Chip data	13.59	□□□□□ -0.23	not detected

Retrieved 100 of 5,963 RNA–protein pairs in 15.2 ms