RNA–Protein interactions for RNA: ENST00000640653.1

VEGFA-232, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,170 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-232ENST00000640653 ZNF536O15090 1300 aa29.68■■■□□ 2.34
VEGFA-232ENST00000640653 RARBP10826 455 aa29.67■■■□□ 2.34
VEGFA-232ENST00000640653 LRRC26Q2I0M4 334 aa29.67■■■□□ 2.34
VEGFA-232ENST00000640653 MAMDC4Q6UXC1 1216 aa29.67■■■□□ 2.34
VEGFA-232ENST00000640653 RNF146Q9NTX7 359 aa29.67■■■□□ 2.34
VEGFA-232ENST00000640653 ZMYND8Q9ULU4 1186 aaPredicted RBP29.67■■■□□ 2.34
VEGFA-232ENST00000640653 ZNF865P0CJ78 1059 aaPredicted RBP29.66■■■□□ 2.34
VEGFA-232ENST00000640653 AKR1A1P14550 325 aa29.66■■■□□ 2.34
VEGFA-232ENST00000640653 CCDC174Q6PII3 467 aa29.66■■■□□ 2.34
VEGFA-232ENST00000640653 PRO3102Q9H379 93 aa29.66■■■□□ 2.34
VEGFA-232ENST00000640653 RAD50Q92878 1312 aa29.66■■■□□ 2.34
VEGFA-232ENST00000640653 LAMA4Q16363 1823 aa29.66■■■□□ 2.34
VEGFA-232ENST00000640653 MYCNP04198 464 aaPredicted RBP29.65■■■□□ 2.34
VEGFA-232ENST00000640653 ALAS1P13196 640 aa29.65■■■□□ 2.34
VEGFA-232ENST00000640653 TAL1P17542 331 aaPredicted RBP29.65■■■□□ 2.34
VEGFA-232ENST00000640653 CCDC178Q5BJE1 867 aa29.65■■■□□ 2.34
VEGFA-232ENST00000640653 BTNL9Q6UXG8 535 aa29.65■■■□□ 2.34
VEGFA-232ENST00000640653 IQCA1Q86XH1 822 aa29.65■■■□□ 2.34
VEGFA-232ENST00000640653 TRERF1Q96PN7 1200 aa29.65■■■□□ 2.34
VEGFA-232ENST00000640653 XPNPEP3Q9NQH7 507 aa29.65■■■□□ 2.34
VEGFA-232ENST00000640653 FXR1P51114 621 aaKnown RBP eCLIP29.64■■■□□ 2.34
VEGFA-232ENST00000640653 SNAP25P60880 206 aa29.64■■■□□ 2.34
VEGFA-232ENST00000640653 LRRC41Q15345 812 aa29.64■■■□□ 2.34
VEGFA-232ENST00000640653 SYDE2Q5VT97 1194 aa29.64■■■□□ 2.34
VEGFA-232ENST00000640653 TTBK2Q6IQ55 1244 aa29.64■■■□□ 2.34
VEGFA-232ENST00000640653 DGKHQ86XP1 1220 aa29.64■■■□□ 2.34
VEGFA-232ENST00000640653 RUFY2Q8WXA3 655 aa29.64■■■□□ 2.34
VEGFA-232ENST00000640653 FRMPD2Q68DX3 1309 aaPredicted RBP29.64■■■□□ 2.34
VEGFA-232ENST00000640653 POTEB2H3BUK9 544 aa29.63■■■□□ 2.33
VEGFA-232ENST00000640653 SNAI1O95863 264 aaPredicted RBP29.63■■■□□ 2.33
VEGFA-232ENST00000640653 PDHBP11177 359 aa29.63■■■□□ 2.33
VEGFA-232ENST00000640653 SYN1P17600 705 aa29.63■■■□□ 2.33
VEGFA-232ENST00000640653 ZKSCAN3Q9BRR0 538 aa29.63■■■□□ 2.33
VEGFA-232ENST00000640653 RANBP17Q9H2T7 1088 aaKnown RBP29.63■■■□□ 2.33
VEGFA-232ENST00000640653 GPCPD1Q9NPB8 672 aa29.63■■■□□ 2.33
VEGFA-232ENST00000640653 CCPG1Q9ULG6 757 aa29.63■■■□□ 2.33
VEGFA-232ENST00000640653 A0A1W2PPC1 479 aa29.62■■■□□ 2.33
VEGFA-232ENST00000640653 KDM4AO75164 1064 aa29.62■■■□□ 2.33
VEGFA-232ENST00000640653 ICAM1P05362 532 aa29.62■■■□□ 2.33
VEGFA-232ENST00000640653 SLC16A2P36021 539 aa29.62■■■□□ 2.33
VEGFA-232ENST00000640653 ATN1P54259 1190 aaPredicted RBP29.62■■■□□ 2.33
VEGFA-232ENST00000640653 A1CFQ9NQ94 594 aaKnown RBP29.62■■■□□ 2.33
VEGFA-232ENST00000640653 ZHX1Q9UKY1 873 aaPredicted RBP29.62■■■□□ 2.33
VEGFA-232ENST00000640653 FAM184BQ9ULE4 1060 aa29.62■■■□□ 2.33
VEGFA-232ENST00000640653 CEP290O15078 2479 aa29.62■■■□□ 2.33
VEGFA-232ENST00000640653 RNF180Q86T96 592 aa29.61■■■□□ 2.33
VEGFA-232ENST00000640653 KRT23Q9C075 422 aa29.61■■■□□ 2.33
VEGFA-232ENST00000640653 IL25Q9H293 177 aa29.61■■■□□ 2.33
VEGFA-232ENST00000640653 CNNM2Q9H8M5 875 aa29.61■■■□□ 2.33
VEGFA-232ENST00000640653 CDKN2AIPQ9NXV6 580 aaPredicted RBP29.61■■■□□ 2.33
VEGFA-232ENST00000640653 B4E1Z4 1266 aa29.6■■■□□ 2.33
VEGFA-232ENST00000640653 SNHG28P0DPA3 235 aa29.6■■■□□ 2.33
VEGFA-232ENST00000640653 ZNF543Q08ER8 600 aa29.6■■■□□ 2.33
VEGFA-232ENST00000640653 ACVR2BQ13705 512 aa29.6■■■□□ 2.33
VEGFA-232ENST00000640653 FAM133AQ8N9E0 248 aa29.6■■■□□ 2.33
VEGFA-232ENST00000640653 FGD4Q96M96 766 aa29.6■■■□□ 2.33
VEGFA-232ENST00000640653 ABHD16BQ9H3Z7 469 aa29.6■■■□□ 2.33
VEGFA-232ENST00000640653 CHMLP26374 656 aa29.59■■■□□ 2.33
VEGFA-232ENST00000640653 CNTN2Q02246 1040 aa29.59■■■□□ 2.33
VEGFA-232ENST00000640653 GPATCH4Q5T3I0 446 aaKnown RBP29.59■■■□□ 2.33
VEGFA-232ENST00000640653 ARMCX2Q7L311 632 aa29.59■■■□□ 2.33
VEGFA-232ENST00000640653 GDF15Q99988 308 aa29.59■■■□□ 2.33
VEGFA-232ENST00000640653 PNMA2Q9UL42 364 aa29.59■■■□□ 2.33
VEGFA-232ENST00000640653 PGK1P00558 417 aa29.58■■■□□ 2.33
VEGFA-232ENST00000640653 BMP8BP34820 402 aa29.58■■■□□ 2.33
VEGFA-232ENST00000640653 ADCYAP1R1P41586 468 aa29.58■■■□□ 2.33
VEGFA-232ENST00000640653 RTP1P59025 263 aa29.58■■■□□ 2.33
VEGFA-232ENST00000640653 MUM1L1Q5H9M0 696 aa29.58■■■□□ 2.33
VEGFA-232ENST00000640653 SLC39A5Q6ZMH5 540 aa29.58■■■□□ 2.33
VEGFA-232ENST00000640653 ZSCAN10Q96SZ4 725 aaPredicted RBP29.58■■■□□ 2.33
VEGFA-232ENST00000640653 KAT14Q9H8E8 782 aa29.58■■■□□ 2.33
VEGFA-232ENST00000640653 CCDC144CPQ8IYA2 1237 aa29.57■■■□□ 2.32
VEGFA-232ENST00000640653 PNMA1Q8ND90 353 aa29.57■■■□□ 2.32
VEGFA-232ENST00000640653 ANKS1AQ92625 1134 aa29.57■■■□□ 2.32
VEGFA-232ENST00000640653 ZSWIM5Q9P217 1185 aa29.57■■■□□ 2.32
VEGFA-232ENST00000640653 ASB14A6NK59 587 aa29.56■■■□□ 2.32
VEGFA-232ENST00000640653 MAGEA10P43363 369 aaPredicted RBP29.56■■■□□ 2.32
VEGFA-232ENST00000640653 NSMFQ6X4W1 530 aa29.56■■■□□ 2.32
VEGFA-232ENST00000640653 LENG1Q96BZ8 264 aaPredicted RBP29.56■■■□□ 2.32
VEGFA-232ENST00000640653 CYP39A1Q9NYL5 469 aa29.56■■■□□ 2.32
VEGFA-232ENST00000640653 PHF24Q9UPV7 400 aa29.56■■■□□ 2.32
VEGFA-232ENST00000640653 DUSP11O75319 330 aaKnown RBP29.55■■■□□ 2.32
VEGFA-232ENST00000640653 FERMT2Q96AC1 680 aa29.55■■■□□ 2.32
VEGFA-232ENST00000640653 UBAC1Q9BSL1 405 aa29.55■■■□□ 2.32
VEGFA-232ENST00000640653 ATP11BQ9Y2G3 1177 aa29.55■■■□□ 2.32
VEGFA-232ENST00000640653 TNKSO95271 1327 aa29.54■■■□□ 2.32
VEGFA-232ENST00000640653 SYNRGQ9UMZ2 1314 aa29.54■■■□□ 2.32
VEGFA-232ENST00000640653 SOWAHBA6NEL2 793 aa29.54■■■□□ 2.32
VEGFA-232ENST00000640653 ADAMTS4O75173 837 aa29.54■■■□□ 2.32
VEGFA-232ENST00000640653 SNX17Q15036 470 aa29.54■■■□□ 2.32
VEGFA-232ENST00000640653 ENAHQ8N8S7 591 aaPredicted RBP29.54■■■□□ 2.32
VEGFA-232ENST00000640653 PRKAG2Q9UGJ0 569 aa29.54■■■□□ 2.32
VEGFA-232ENST00000640653 SMCHD1A6NHR9 2005 aa29.54■■■□□ 2.32
VEGFA-232ENST00000640653 TRDNQ13061 729 aa29.53■■■□□ 2.32
VEGFA-232ENST00000640653 CCDC144BQ3MJ40 725 aa29.53■■■□□ 2.32
VEGFA-232ENST00000640653 TSEN34Q9BSV6 310 aaKnown RBP29.53■■■□□ 2.32
VEGFA-232ENST00000640653 SPC25Q9HBM1 224 aa29.53■■■□□ 2.32
VEGFA-232ENST00000640653 U3KPZ7 1027 aaPredicted RBP29.53■■■□□ 2.32
VEGFA-232ENST00000640653 C1orf53Q5VUE5 145 aa29.52■■■□□ 2.32
VEGFA-232ENST00000640653 WDR19Q8NEZ3 1342 aa29.51■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms