RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 MRRFQ96E11 262 aaKnown RBP7.25□□□□□ -1.25
CD44-239ENST00000639002 FAM86C1Q9NVL1 165 aa7.25□□□□□ -1.25
CD44-239ENST00000639002 EFR3BQ9Y2G0 817 aa7.25□□□□□ -1.25
CD44-239ENST00000639002 ADAMTS20P59510 1910 aa7.25□□□□□ -1.25
CD44-239ENST00000639002 KRTAP9-7A8MTY7 169 aa7.24□□□□□ -1.25
CD44-239ENST00000639002 ERVFRD-1P60508 538 aa7.24□□□□□ -1.25
CD44-239ENST00000639002 YBX1P67809 324 aaKnown RBP7.24□□□□□ -1.25
CD44-239ENST00000639002 COL9A2Q14055 689 aaPredicted RBP7.24□□□□□ -1.25
CD44-239ENST00000639002 GALNT18Q6P9A2 607 aa7.24□□□□□ -1.25
CD44-239ENST00000639002 JMJD8Q96S16 334 aa7.24□□□□□ -1.25
CD44-239ENST00000639002 DSCC1Q9BVC3 393 aa7.24□□□□□ -1.25
CD44-239ENST00000639002 KRTAP4-7Q9BYR0 210 aa7.24□□□□□ -1.25
CD44-239ENST00000639002 MBD1Q9UIS9 605 aaPredicted RBP7.24□□□□□ -1.25
CD44-239ENST00000639002 ACSL6Q9UKU0 697 aa7.24□□□□□ -1.25
CD44-239ENST00000639002 A0A1W2PQ45 241 aaPredicted RBP7.23□□□□□ -1.25
CD44-239ENST00000639002 A0A1W2PQY0 241 aa7.23□□□□□ -1.25
CD44-239ENST00000639002 WTIPA6NIX2 430 aaPredicted RBP7.23□□□□□ -1.25
CD44-239ENST00000639002 CBFA2T2O43439 604 aa7.23□□□□□ -1.25
CD44-239ENST00000639002 GIPRP48546 466 aa7.23□□□□□ -1.25
CD44-239ENST00000639002 TMEM132EQ6IEE7 984 aa7.23□□□□□ -1.25
CD44-239ENST00000639002 NT5DC4Q86YG4 428 aa7.23□□□□□ -1.25
CD44-239ENST00000639002 SRRTQ9BXP5 876 aaKnown RBP7.23□□□□□ -1.25
CD44-239ENST00000639002 KLHL14Q9P2G3 628 aa7.23□□□□□ -1.25
CD44-239ENST00000639002 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.23□□□□□ -1.25
CD44-239ENST00000639002 HRKO00198 91 aa7.22□□□□□ -1.25
CD44-239ENST00000639002 GSTM1P09488 218 aa7.22□□□□□ -1.25
CD44-239ENST00000639002 PRKCAP17252 672 aa7.22□□□□□ -1.25
CD44-239ENST00000639002 VIPR1P32241 457 aa7.22□□□□□ -1.25
CD44-239ENST00000639002 GJA8P48165 433 aa7.22□□□□□ -1.25
CD44-239ENST00000639002 SRSF3P84103 164 aaKnown RBP7.22□□□□□ -1.25
CD44-239ENST00000639002 GPRASP2Q96D09 838 aa7.22□□□□□ -1.25
CD44-239ENST00000639002 FCRL3Q96P31 734 aaPredicted RBP7.22□□□□□ -1.25
CD44-239ENST00000639002 IRF2BPLQ9H1B7 796 aa7.22□□□□□ -1.25
CD44-239ENST00000639002 CNTD2Q9H8S5 307 aa7.22□□□□□ -1.25
CD44-239ENST00000639002 FHOD1Q9Y613 1164 aa7.22□□□□□ -1.25
CD44-239ENST00000639002 A0A1W2PQH9 124 aa7.21□□□□□ -1.26
CD44-239ENST00000639002 NUAK1O60285 661 aa7.21□□□□□ -1.26
CD44-239ENST00000639002 MSL3P1P0C860 447 aa7.21□□□□□ -1.26
CD44-239ENST00000639002 ENDOUP21128 410 aaKnown RBP7.21□□□□□ -1.26
CD44-239ENST00000639002 EPHB3P54753 998 aa7.21□□□□□ -1.26
CD44-239ENST00000639002 MVKQ03426 396 aa7.21□□□□□ -1.26
CD44-239ENST00000639002 SSPNQ14714 243 aa7.21□□□□□ -1.26
CD44-239ENST00000639002 NOL9Q5SY16 702 aaKnown RBP7.21□□□□□ -1.26
CD44-239ENST00000639002 CIAPIN1Q6FI81 312 aa7.21□□□□□ -1.26
CD44-239ENST00000639002 FIBCD1Q8N539 461 aa7.21□□□□□ -1.26
CD44-239ENST00000639002 IMPACTQ9P2X3 320 aa7.21□□□□□ -1.26
CD44-239ENST00000639002 PCDHB10Q9UN67 800 aa7.21□□□□□ -1.26
CD44-239ENST00000639002 FGF10O15520 208 aaPredicted RBP7.2□□□□□ -1.26
CD44-239ENST00000639002 EIF6P56537 245 aaKnown RBP7.2□□□□□ -1.26
CD44-239ENST00000639002 RGS22Q8NE09 1264 aa7.2□□□□□ -1.26
CD44-239ENST00000639002 PANK1Q8TE04 598 aa7.2□□□□□ -1.26
CD44-239ENST00000639002 SHDQ96IW2 340 aa7.2□□□□□ -1.26
CD44-239ENST00000639002 MCMBPQ9BTE3 642 aa7.2□□□□□ -1.26
CD44-239ENST00000639002 NOL6Q9H6R4 1146 aaKnown RBP7.2□□□□□ -1.26
CD44-239ENST00000639002 TNFRSF12AQ9NP84 129 aa7.2□□□□□ -1.26
CD44-239ENST00000639002 TAF6LQ9Y6J9 622 aa7.2□□□□□ -1.26
CD44-239ENST00000639002 IFNGR1P15260 489 aa7.19□□□□□ -1.26
CD44-239ENST00000639002 CYP4F8P98187 520 aa7.19□□□□□ -1.26
CD44-239ENST00000639002 NUP43Q8NFH3 380 aa7.19□□□□□ -1.26
CD44-239ENST00000639002 KLHL6Q8WZ60 621 aa7.19□□□□□ -1.26
CD44-239ENST00000639002 SPATA32Q96LK8 384 aa7.19□□□□□ -1.26
CD44-239ENST00000639002 CRBNQ96SW2 442 aa7.19□□□□□ -1.26
CD44-239ENST00000639002 HAUS7Q99871 368 aa7.19□□□□□ -1.26
CD44-239ENST00000639002 KLHL25Q9H0H3 589 aa7.19□□□□□ -1.26
CD44-239ENST00000639002 EPB41L4AQ9HCS5 686 aaPredicted RBP7.19□□□□□ -1.26
CD44-239ENST00000639002 KCTD3Q9Y597 815 aa7.19□□□□□ -1.26
CD44-239ENST00000639002 A0A087WZG4 1122 aa7.18□□□□□ -1.26
CD44-239ENST00000639002 CDR1P51861 262 aa7.18□□□□□ -1.26
CD44-239ENST00000639002 LAPTM5Q13571 262 aa7.18□□□□□ -1.26
CD44-239ENST00000639002 CBX2Q14781 532 aaPredicted RBP7.18□□□□□ -1.26
CD44-239ENST00000639002 CWF19L1Q69YN2 538 aaKnown RBP7.18□□□□□ -1.26
CD44-239ENST00000639002 C19orf47Q8N9M1 422 aaKnown RBP7.18□□□□□ -1.26
CD44-239ENST00000639002 ACBD3Q9H3P7 528 aa7.18□□□□□ -1.26
CD44-239ENST00000639002 SUSD2Q9UGT4 822 aa7.18□□□□□ -1.26
CD44-239ENST00000639002 CNOT6Q9ULM6 557 aaKnown RBP7.18□□□□□ -1.26
CD44-239ENST00000639002 N4BP3O15049 544 aa7.17□□□□□ -1.26
CD44-239ENST00000639002 MPOP05164 745 aa7.17□□□□□ -1.26
CD44-239ENST00000639002 ITGA4P13612 1032 aa7.17□□□□□ -1.26
CD44-239ENST00000639002 NASPP49321 788 aaPredicted RBP7.17□□□□□ -1.26
CD44-239ENST00000639002 GNPTABQ3T906 1256 aa7.17□□□□□ -1.26
CD44-239ENST00000639002 HLA-DQA1Q5Y7H0 255 aa7.17□□□□□ -1.26
CD44-239ENST00000639002 TTLL10Q6ZVT0 673 aa7.17□□□□□ -1.26
CD44-239ENST00000639002 TMEFF1Q8IYR6 380 aa7.17□□□□□ -1.26
CD44-239ENST00000639002 FAM169BQ8N8A8 192 aa7.17□□□□□ -1.26
CD44-239ENST00000639002 ZDHHC15Q96MV8 337 aa7.17□□□□□ -1.26
CD44-239ENST00000639002 SIRT5Q9NXA8 310 aa7.17□□□□□ -1.26
CD44-239ENST00000639002 DIS3Q9Y2L1 958 aaKnown RBP7.17□□□□□ -1.26
CD44-239ENST00000639002 IRS4O14654 1257 aaPredicted RBP7.16□□□□□ -1.26
CD44-239ENST00000639002 ARL4AP40617 200 aa7.16□□□□□ -1.26
CD44-239ENST00000639002 NOP2P46087 812 aaKnown RBP7.16□□□□□ -1.26
CD44-239ENST00000639002 PPP2R5DQ14738 602 aa7.16□□□□□ -1.26
CD44-239ENST00000639002 RAB3GAP1Q15042 981 aa7.16□□□□□ -1.26
CD44-239ENST00000639002 TCEAL1Q15170 157 aa7.16□□□□□ -1.26
CD44-239ENST00000639002 RPTNQ6XPR3 784 aa7.16□□□□□ -1.26
CD44-239ENST00000639002 LDHDQ86WU2 507 aa7.16□□□□□ -1.26
CD44-239ENST00000639002 ZNF513Q8N8E2 541 aaPredicted RBP7.16□□□□□ -1.26
CD44-239ENST00000639002 ADCY4Q8NFM4 1077 aa7.16□□□□□ -1.26
CD44-239ENST00000639002 SIGLEC10Q96LC7 697 aa7.16□□□□□ -1.26
CD44-239ENST00000639002 PTCHD1Q96NR3 888 aa7.16□□□□□ -1.26
CD44-239ENST00000639002 PHAXQ9H814 394 aaKnown RBP7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms