RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 TRIM47Q96LD4 638 aa22.57■■□□□ 1.2
SYNGAP1-227ENST00000638142 KBTBD4Q9NVX7 518 aa22.57■■□□□ 1.2
SYNGAP1-227ENST00000638142 LAD1O00515 517 aa22.57■■□□□ 1.2
SYNGAP1-227ENST00000638142 LMAN1P49257 510 aa22.57■■□□□ 1.2
SYNGAP1-227ENST00000638142 GNAQP50148 359 aa22.57■■□□□ 1.2
SYNGAP1-227ENST00000638142 PMS1P54277 932 aaKnown RBP22.57■■□□□ 1.2
SYNGAP1-227ENST00000638142 KRT83P78385 493 aa22.57■■□□□ 1.2
SYNGAP1-227ENST00000638142 NCAPH2Q6IBW4 605 aa22.57■■□□□ 1.2
SYNGAP1-227ENST00000638142 GPKOWQ92917 476 aaPredicted RBP eCLIP22.57■■□□□ 1.2
SYNGAP1-227ENST00000638142 ACBD3Q9H3P7 528 aa22.57■■□□□ 1.2
SYNGAP1-227ENST00000638142 VPS18Q9P253 973 aa22.57■■□□□ 1.2
SYNGAP1-227ENST00000638142 MAST2Q6P0Q8 1798 aa22.56■■□□□ 1.2
SYNGAP1-227ENST00000638142 UBA7P41226 1012 aa22.56■■□□□ 1.2
SYNGAP1-227ENST00000638142 MEA1Q16626 185 aa22.56■■□□□ 1.2
SYNGAP1-227ENST00000638142 ANKS1AQ92625 1134 aa22.56■■□□□ 1.2
SYNGAP1-227ENST00000638142 TAF1P21675 1872 aa22.56■■□□□ 1.2
SYNGAP1-227ENST00000638142 DDB1Q16531 1140 aa22.56■■□□□ 1.2
SYNGAP1-227ENST00000638142 TTI2Q6NXR4 508 aa22.56■■□□□ 1.2
SYNGAP1-227ENST00000638142 WDR59Q6PJI9 974 aa22.56■■□□□ 1.2
SYNGAP1-227ENST00000638142 PNMA1Q8ND90 353 aa22.56■■□□□ 1.2
SYNGAP1-227ENST00000638142 CELF1Q92879 486 aaKnown RBP22.56■■□□□ 1.2
SYNGAP1-227ENST00000638142 ACSBG1Q96GR2 724 aa22.56■■□□□ 1.2
SYNGAP1-227ENST00000638142 DHTKD1Q96HY7 919 aaPredicted RBP22.56■■□□□ 1.2
SYNGAP1-227ENST00000638142 TRERF1Q96PN7 1200 aa22.56■■□□□ 1.2
SYNGAP1-227ENST00000638142 CUEDC2Q9H467 287 aa22.56■■□□□ 1.2
SYNGAP1-227ENST00000638142 SUGCTQ9HAC7 445 aa22.56■■□□□ 1.2
SYNGAP1-227ENST00000638142 MAGEF1Q9HAY2 307 aa22.56■■□□□ 1.2
SYNGAP1-227ENST00000638142 TRIM10Q9UDY6 481 aa22.56■■□□□ 1.2
SYNGAP1-227ENST00000638142 MCM3P25205 808 aa22.55■■□□□ 1.2
SYNGAP1-227ENST00000638142 HERVK_113P62684 666 aa22.55■■□□□ 1.2
SYNGAP1-227ENST00000638142 RETREG2Q8NC44 543 aa22.55■■□□□ 1.2
SYNGAP1-227ENST00000638142 NUP58Q9BVL2 599 aa22.55■■□□□ 1.2
SYNGAP1-227ENST00000638142 PES1O00541 588 aaKnown RBP22.55■■□□□ 1.2
SYNGAP1-227ENST00000638142 SRGNP10124 158 aa22.55■■□□□ 1.2
SYNGAP1-227ENST00000638142 HIBADHP31937 336 aaKnown RBP22.55■■□□□ 1.2
SYNGAP1-227ENST00000638142 PRPHP41219 470 aa22.55■■□□□ 1.2
SYNGAP1-227ENST00000638142 GRM4Q14833 912 aa22.55■■□□□ 1.2
SYNGAP1-227ENST00000638142 CCDC122Q5T0U0 273 aa22.55■■□□□ 1.2
SYNGAP1-227ENST00000638142 PAPD7Q5XG87 772 aaKnown RBP22.55■■□□□ 1.2
SYNGAP1-227ENST00000638142 FAM71BQ8TC56 605 aa22.55■■□□□ 1.2
SYNGAP1-227ENST00000638142 RASGRP4Q8TDF6 673 aa22.55■■□□□ 1.2
SYNGAP1-227ENST00000638142 RPGRIP1Q96KN7 1286 aa22.55■■□□□ 1.2
SYNGAP1-227ENST00000638142 PCDHA6Q9UN73 950 aa22.55■■□□□ 1.2
SYNGAP1-227ENST00000638142 PCDHA8Q9Y5H6 950 aa22.55■■□□□ 1.2
SYNGAP1-227ENST00000638142 PRDX5P30044 214 aa22.54■■□□□ 1.2
SYNGAP1-227ENST00000638142 HSP90B2PQ58FF3 399 aa22.54■■□□□ 1.2
SYNGAP1-227ENST00000638142 TMEM60Q9H2L4 133 aa22.54■■□□□ 1.2
SYNGAP1-227ENST00000638142 MCM9Q9NXL9 1143 aa22.54■■□□□ 1.2
SYNGAP1-227ENST00000638142 SAR1BQ9Y6B6 198 aa22.54■■□□□ 1.2
SYNGAP1-227ENST00000638142 COL16A1Q07092 1604 aaPredicted RBP22.54■■□□□ 1.2
SYNGAP1-227ENST00000638142 CASZ1Q86V15 1759 aa22.54■■□□□ 1.2
SYNGAP1-227ENST00000638142 KLRK1P26718 216 aa22.54■■□□□ 1.2
SYNGAP1-227ENST00000638142 ACTN2P35609 894 aa22.54■■□□□ 1.2
SYNGAP1-227ENST00000638142 CYLC1P35663 651 aaPredicted RBP22.54■■□□□ 1.2
SYNGAP1-227ENST00000638142 TFAP4Q01664 338 aa22.54■■□□□ 1.2
SYNGAP1-227ENST00000638142 CCDC178Q5BJE1 867 aa22.54■■□□□ 1.2
SYNGAP1-227ENST00000638142 TYW1BQ6NUM6 668 aa22.54■■□□□ 1.2
SYNGAP1-227ENST00000638142 TTYH3Q9C0H2 523 aa22.54■■□□□ 1.2
SYNGAP1-227ENST00000638142 MED4Q9NPJ6 270 aa22.54■■□□□ 1.2
SYNGAP1-227ENST00000638142 EXOC1Q9NV70 894 aa22.54■■□□□ 1.2
SYNGAP1-227ENST00000638142 PP2D1A8MPX8 630 aa22.53■■□□□ 1.2
SYNGAP1-227ENST00000638142 KRT86O43790 486 aa22.53■■□□□ 1.2
SYNGAP1-227ENST00000638142 USP14P54578 494 aa22.53■■□□□ 1.2
SYNGAP1-227ENST00000638142 SLC10A5Q5PT55 438 aa22.53■■□□□ 1.2
SYNGAP1-227ENST00000638142 STAG2Q8N3U4 1231 aa22.53■■□□□ 1.2
SYNGAP1-227ENST00000638142 VIPAS39Q9H9C1 493 aa22.53■■□□□ 1.2
SYNGAP1-227ENST00000638142 IL17RBQ9NRM6 502 aa22.53■■□□□ 1.2
SYNGAP1-227ENST00000638142 ROBO1Q9Y6N7 1651 aa22.53■■□□□ 1.2
SYNGAP1-227ENST00000638142 CCDC47Q96A33 483 aaKnown RBP22.53■■□□□ 1.2
SYNGAP1-227ENST00000638142 TUBGCP2Q9BSJ2 902 aa22.53■■□□□ 1.2
SYNGAP1-227ENST00000638142 ZNHIT6Q9NWK9 470 aaKnown RBP22.53■■□□□ 1.2
SYNGAP1-227ENST00000638142 BICDL2A1A5D9 508 aa22.52■■□□□ 1.2
SYNGAP1-227ENST00000638142 CKAP4Q07065 602 aaKnown RBP22.52■■□□□ 1.2
SYNGAP1-227ENST00000638142 KIAA1328Q86T90 577 aa22.52■■□□□ 1.2
SYNGAP1-227ENST00000638142 CCDC170Q8IYT3 715 aa22.52■■□□□ 1.2
SYNGAP1-227ENST00000638142 CSGALNACT2Q8N6G5 542 aa22.52■■□□□ 1.2
SYNGAP1-227ENST00000638142 AK8Q96MA6 479 aa22.52■■□□□ 1.2
SYNGAP1-227ENST00000638142 ANKRD2Q9GZV1 360 aa22.52■■□□□ 1.2
SYNGAP1-227ENST00000638142 MAD2L2Q9UI95 211 aa22.52■■□□□ 1.2
SYNGAP1-227ENST00000638142 B4DLN1 442 aa22.52■■□□□ 1.2
SYNGAP1-227ENST00000638142 N4BP1O75113 896 aaKnown RBP22.52■■□□□ 1.2
SYNGAP1-227ENST00000638142 PPP1R2P41236 205 aa22.52■■□□□ 1.2
SYNGAP1-227ENST00000638142 INF2Q27J81 1249 aa22.52■■□□□ 1.2
SYNGAP1-227ENST00000638142 C12orf60Q5U649 245 aa22.52■■□□□ 1.2
SYNGAP1-227ENST00000638142 FAM114A1Q8IWE2 563 aa22.52■■□□□ 1.2
SYNGAP1-227ENST00000638142 BARHL2Q9NY43 387 aa22.52■■□□□ 1.2
SYNGAP1-227ENST00000638142 FAN1Q9Y2M0 1017 aa22.52■■□□□ 1.2
SYNGAP1-227ENST00000638142 CCDC88AQ3V6T2 1871 aa22.51■■□□□ 1.19
SYNGAP1-227ENST00000638142 ENC1O14682 589 aa22.51■■□□□ 1.19
SYNGAP1-227ENST00000638142 IPO7O95373 1038 aaKnown RBP22.51■■□□□ 1.19
SYNGAP1-227ENST00000638142 ATP1A1P05023 1023 aaKnown RBP22.51■■□□□ 1.19
SYNGAP1-227ENST00000638142 TRIM21P19474 475 aaKnown RBP22.51■■□□□ 1.19
SYNGAP1-227ENST00000638142 RPS8P62241 208 aaKnown RBP22.51■■□□□ 1.19
SYNGAP1-227ENST00000638142 MAP9Q49MG5 647 aa22.51■■□□□ 1.19
SYNGAP1-227ENST00000638142 SMARCC1Q92922 1105 aaPredicted RBP22.51■■□□□ 1.19
SYNGAP1-227ENST00000638142 JAKMIP2Q96AA8 810 aa22.51■■□□□ 1.19
SYNGAP1-227ENST00000638142 DUSP9Q99956 384 aaKnown RBP22.51■■□□□ 1.19
SYNGAP1-227ENST00000638142 THRAP3Q9Y2W1 955 aaKnown RBP22.51■■□□□ 1.19
SYNGAP1-227ENST00000638142 TARSL2A2RTX5 802 aaKnown RBP22.51■■□□□ 1.19
SYNGAP1-227ENST00000638142 EIF3CLB5ME19 914 aaKnown RBP22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms